Wall clock time and date at job start Tue Mar 31 2020 01:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99896 * 2 1 4 4 N 1.46496 * 109.47494 * 124.99740 * 3 2 1 5 5 C 1.46500 * 120.00165 * 269.99923 * 4 3 2 6 6 C 1.50698 * 109.46860 * 269.99620 * 5 4 3 7 7 H 1.07995 * 120.00336 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99722 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99990 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00067 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46961 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47001 * 119.99961 * 10 8 6 13 13 H 1.48492 * 109.47439 * 240.00327 * 10 8 6 14 14 C 1.34780 * 119.99959 * 89.99692 * 4 3 2 15 15 O 1.21281 * 120.00288 * 180.02562 * 14 4 3 16 16 C 1.50705 * 119.99916 * 0.02562 * 14 4 3 17 17 C 1.53001 * 109.46939 * 179.97438 * 16 14 4 18 18 C 1.52999 * 109.46942 * 180.02562 * 17 16 14 19 19 N 1.46500 * 109.47084 * 179.97438 * 18 17 16 20 20 C 1.34429 * 126.81895 * 124.99739 * 19 18 17 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 H 1.08009 * 119.99923 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99863 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47397 * 4.99392 * 3 2 1 28 28 H 1.09007 * 109.46896 * 244.99865 * 3 2 1 29 29 H 1.08995 * 109.47205 * 29.99637 * 5 4 3 30 30 H 1.09005 * 109.47096 * 149.99688 * 5 4 3 31 31 H 0.96996 * 120.00316 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.46731 * 60.00575 * 16 14 4 33 33 H 1.08996 * 109.47067 * 299.99899 * 16 14 4 34 34 H 1.09002 * 109.47043 * 60.00069 * 17 16 14 35 35 H 1.08996 * 109.47276 * 299.99914 * 17 16 14 36 36 H 1.09002 * 109.47279 * 60.00111 * 18 17 16 37 37 H 1.08995 * 109.47424 * 300.00289 * 18 17 16 38 38 H 1.08000 * 125.96340 * 359.97438 * 20 19 18 39 39 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3437 2.4802 7 1 3.3032 3.8371 1.6363 8 6 2.5183 4.0670 3.6080 9 7 1.9589 3.4662 4.6355 10 14 2.8715 5.9000 3.6766 11 1 3.4994 6.3311 2.4017 12 1 1.6008 6.6417 3.8775 13 1 3.7944 6.1845 4.8045 14 6 4.2496 0.8662 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6972 0.3183 -0.3482 17 6 6.1537 -0.1393 -0.2475 18 6 6.6083 -0.6950 -1.5986 19 7 8.0031 -1.1326 -1.5023 20 6 8.4879 -2.3502 -1.8014 21 7 9.7777 -2.3389 -1.5819 22 6 10.1511 -1.1369 -1.1446 23 7 9.0985 -0.3651 -1.0739 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4887 1.6968 2.5459 30 1 3.0989 1.3605 3.2260 31 1 1.7300 3.9749 5.4290 32 1 4.6126 1.0953 -1.1081 33 1 4.0681 -0.5284 -0.6227 34 1 6.2387 -0.9161 0.5125 35 1 6.7825 0.7077 0.0267 36 1 6.5233 0.0821 -2.3582 37 1 5.9795 -1.5419 -1.8733 38 1 7.9129 -3.1914 -2.1596 39 1 11.1592 -0.8488 -0.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814134163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:18 Heat of formation + Delta-G solvation = 47.463172 kcal Electronic energy + Delta-G solvation = -20928.826759 eV Core-core repulsion = 17680.133415 eV Total energy + Delta-G solvation = -3248.693344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.93004 -40.78202 -37.31361 -36.45189 -35.12891 -33.64272 -33.12292 -32.13302 -29.96087 -27.99762 -26.82234 -25.14548 -23.53790 -22.84804 -21.99908 -21.07306 -19.87797 -18.67125 -18.32892 -17.62428 -17.23388 -16.97304 -16.41991 -16.19205 -15.78894 -15.68093 -15.23590 -14.86253 -14.40358 -14.32464 -14.11859 -13.74724 -13.33167 -13.29254 -12.96761 -12.86774 -12.74609 -12.55191 -12.52798 -12.26281 -12.16068 -11.80145 -11.65885 -10.97802 -10.77617 -10.67732 -10.66510 -10.53110 -10.27000 -9.45592 -8.24761 -6.39593 0.75825 1.33525 1.36299 1.36987 1.48148 1.50093 1.86303 2.04719 2.33427 2.52805 3.04897 3.50121 3.56670 3.71141 3.91166 4.07522 4.13057 4.16541 4.27954 4.35087 4.44013 4.50600 4.60655 4.67365 4.89521 5.01017 5.03646 5.10390 5.22222 5.26589 5.33830 5.50815 5.52129 5.74955 5.77495 5.99461 6.00749 6.04997 6.68747 6.80527 7.16035 7.26999 7.50512 8.82510 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.003873 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.550499 B = 7227.528124 C = 8474.157881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.180 4.180 3 C 0.131 3.869 4 N -0.600 5.600 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.490 3.510 15 O -0.605 6.605 16 C -0.119 4.119 17 C -0.106 4.106 18 C 0.132 3.868 19 N -0.383 5.383 20 C 0.260 3.740 21 N -0.582 5.582 22 C 0.187 3.813 23 N -0.361 5.361 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.020 0.980 30 H -0.008 1.008 31 H 0.267 0.733 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.107 0.893 37 H 0.154 0.846 38 H 0.267 0.733 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -11.672 -19.345 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.199 4.199 3 C 0.009 3.991 4 N -0.330 5.330 5 C 0.142 3.858 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.791 3.209 11 H -0.190 1.190 12 H -0.192 1.192 13 H -0.210 1.210 14 C 0.280 3.720 15 O -0.487 6.487 16 C -0.159 4.159 17 C -0.145 4.145 18 C 0.012 3.988 19 N -0.173 5.173 20 C -0.035 4.035 21 N -0.311 5.311 22 C -0.116 4.116 23 N -0.189 5.189 24 H 0.134 0.866 25 H 0.112 0.888 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.172 0.828 38 H 0.282 0.718 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.216 -11.106 -18.514 21.828 hybrid contribution -0.021 1.063 1.060 1.501 sum 3.195 -10.044 -17.454 20.389 Atomic orbital electron populations 1.24048 0.95828 1.02679 0.98777 1.23363 0.96630 0.98452 1.01425 1.20878 0.92697 0.96262 0.89224 1.48243 1.11992 1.59778 1.12976 1.18647 0.93694 0.92608 0.80857 1.21763 1.40390 0.94556 1.01390 0.92792 1.25872 0.94690 1.03788 0.94905 1.70057 1.42931 1.38063 1.05806 0.85379 0.78244 0.79087 0.78176 1.19031 1.19246 1.20950 1.21591 0.81226 0.77550 0.91630 1.90663 1.54174 1.58815 1.45034 1.21627 0.96691 1.04188 0.93370 1.21407 0.95299 1.00832 0.97012 1.22158 0.74981 1.04225 0.97468 1.50743 1.08852 1.09736 1.48016 1.27013 0.91023 0.90338 0.95152 1.70537 1.12676 1.23603 1.24242 1.26487 1.00086 0.87578 0.97437 1.78049 0.95147 1.21696 1.24004 0.86599 0.88790 0.85963 0.91075 0.86610 0.96212 0.99004 0.92436 0.85996 0.84730 0.93037 0.93918 0.87526 0.82808 0.71788 0.74978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 14.32 67.78 0.97 -2.81 16 2 C -0.18 -4.16 9.74 25.64 0.25 -3.91 16 3 C 0.13 3.70 5.65 85.63 0.48 4.18 16 4 N -0.60 -24.47 2.44 -830.50 -2.03 -26.50 16 5 C 0.26 14.30 5.16 85.63 0.44 14.74 16 6 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.37 5.46 84.66 0.46 0.83 16 9 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 10 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 C 0.49 19.41 7.67 87.66 0.67 20.08 16 15 O -0.60 -31.70 15.56 -3.03 -0.05 -31.74 16 16 C -0.12 -2.62 4.25 29.85 0.13 -2.50 16 17 C -0.11 -2.55 4.71 30.59 0.14 -2.40 16 18 C 0.13 1.76 6.55 86.38 0.57 2.32 16 19 N -0.38 -7.60 3.69 -352.06 -1.30 -8.90 16 20 C 0.26 4.18 12.63 180.36 2.28 6.45 16 21 N -0.58 -13.08 11.19 -203.99 -2.28 -15.36 16 22 C 0.19 4.39 13.03 180.76 2.36 6.75 16 23 N -0.36 -9.80 12.56 -61.24 -0.77 -10.57 16 24 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 25 H 0.09 2.11 7.84 -2.91 -0.02 2.09 16 26 H 0.12 2.39 7.83 -2.91 -0.02 2.36 16 27 H 0.07 2.22 7.72 -2.38 -0.02 2.21 16 28 H 0.12 2.27 6.44 -2.38 -0.02 2.25 16 29 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 30 H -0.01 -0.52 7.42 -2.38 -0.02 -0.54 16 31 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.12 2.03 7.40 -2.38 -0.02 2.01 16 33 H 0.13 1.81 7.78 -2.39 -0.02 1.79 16 34 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.15 0.48 8.09 -2.39 -0.02 0.46 16 38 H 0.27 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.23 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -88.64 341.38 5.90 -82.74 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.03 Total: 7.05 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 8.99 Total: 12.43 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.09 Total: -117.96 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.05 Total: -31.74 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -88.64 5.90 -82.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.203 kcal (2) G-P(sol) polarization free energy of solvation -88.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds