Wall clock time and date at job start Tue Mar 31 2020 00:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 C 1.50700 * 109.46976 * 240.00610 * 2 1 3 5 5 H 1.08005 * 120.00184 * 240.00150 * 4 2 1 6 6 C 1.37885 * 120.00248 * 59.99438 * 4 2 1 7 7 N 1.31517 * 119.99810 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47136 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46575 * 120.00562 * 8 6 4 11 11 H 1.48491 * 109.47164 * 240.00355 * 8 6 4 12 12 C 1.52992 * 109.47503 * 120.00556 * 2 1 3 13 13 N 1.46503 * 109.46840 * 299.99813 * 12 2 1 14 14 C 1.34782 * 119.99543 * 179.97438 * 13 12 2 15 15 O 1.21579 * 120.00419 * 359.97438 * 14 13 12 16 16 N 1.34785 * 119.99649 * 180.02562 * 14 13 12 17 17 N 1.40104 * 119.99622 * 359.97438 * 16 14 13 18 18 C 1.39001 * 119.99352 * 179.97438 * 17 16 14 19 19 C 1.39146 * 119.70404 * 179.97438 * 18 17 16 20 20 C 1.38295 * 119.09401 * 179.97438 * 19 18 17 21 21 C 1.38884 * 118.51011 * 0.02562 * 20 19 18 22 22 C 1.38022 * 119.32992 * 0.27628 * 21 20 19 23 23 N 1.31980 * 120.85123 * 359.44533 * 22 21 20 24 24 H 1.09003 * 109.46639 * 299.99470 * 1 2 3 25 25 H 1.08996 * 109.47239 * 59.99238 * 1 2 3 26 26 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47055 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47244 * 300.00754 * 3 2 1 29 29 H 1.09003 * 109.46489 * 60.00444 * 3 2 1 30 30 H 0.96994 * 119.99649 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47369 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.47362 * 59.99941 * 12 2 1 33 33 H 0.96994 * 120.00520 * 0.02562 * 13 12 2 34 34 H 0.96997 * 119.99488 * 179.97438 * 16 14 13 35 35 H 0.96994 * 120.00072 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.44826 * 0.02676 * 19 18 17 37 37 H 1.08000 * 120.74269 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.33299 * 179.97438 * 21 20 19 39 39 H 1.07989 * 119.57343 * 179.72223 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4829 7 7 0.9434 0.8304 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 3.1474 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8161 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0307 2.4453 14 6 1.8771 -0.4917 3.6694 15 8 2.5753 -1.4807 3.7809 16 7 1.4275 0.1433 4.7700 17 7 0.6224 1.2828 4.6414 18 6 0.1583 1.9373 5.7765 19 6 -0.6404 3.0687 5.6418 20 6 -1.0957 3.7097 6.7796 21 6 -0.7353 3.1965 8.0187 22 6 0.0652 2.0737 8.0786 23 7 0.4808 1.4792 6.9761 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7093 1.1620 -3.4843 31 1 3.1301 -0.7217 1.2488 32 1 1.6768 -1.7490 1.2490 33 1 0.9939 0.7576 2.3565 34 1 1.6613 -0.1886 5.6509 35 1 0.3884 1.6144 3.7605 36 1 -0.9019 3.4406 4.6622 37 1 -1.7175 4.5897 6.7060 38 1 -1.0741 3.6739 8.9263 39 1 0.3515 1.6739 9.0401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838756017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:18 Heat of formation + Delta-G solvation = 47.787458 kcal Electronic energy + Delta-G solvation = -21304.304250 eV Core-core repulsion = 18055.624969 eV Total energy + Delta-G solvation = -3248.679282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51215 -39.60352 -36.64633 -36.16708 -33.30534 -32.54183 -32.11502 -30.70642 -28.50824 -25.78780 -25.70495 -24.92192 -23.76278 -22.92504 -20.84692 -19.24558 -18.61389 -18.41355 -16.60697 -16.11720 -15.83523 -15.61225 -15.38568 -14.80443 -14.55567 -14.44737 -14.33499 -13.69399 -13.26914 -13.06944 -12.93728 -12.25021 -12.13337 -11.92388 -11.43735 -11.25983 -10.91933 -10.68964 -10.44869 -10.27719 -10.07304 -10.06868 -9.69755 -9.69154 -9.49163 -9.38321 -8.83718 -8.54953 -8.38862 -7.50365 -6.06032 -4.15773 1.05621 1.21653 1.98455 3.25502 3.30400 3.34570 3.40394 3.42554 3.73078 4.19746 4.38461 4.63169 4.80920 4.92357 5.02141 5.21232 5.43535 5.52144 5.82463 6.05355 6.10231 6.25001 6.29696 6.43358 6.59361 6.72505 6.73940 6.81553 6.93194 6.97089 7.20854 7.32202 7.36279 7.50071 7.66191 7.87177 7.95771 8.07562 8.32982 8.42604 8.80408 8.86346 9.50324 10.95595 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.003506 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.206415 B = 7984.457865 C = 8648.598864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.147 3.853 13 N -0.731 5.731 14 C 0.705 3.295 15 O -0.582 6.582 16 N -0.533 5.533 17 N -0.522 5.522 18 C 0.408 3.592 19 C -0.233 4.233 20 C -0.027 4.027 21 C -0.239 4.239 22 C 0.153 3.847 23 N -0.547 5.547 24 H 0.003 0.997 25 H 0.086 0.914 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.086 0.914 29 H 0.003 0.997 30 H 0.259 0.741 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.388 0.612 34 H 0.438 0.562 35 H 0.431 0.569 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 7.676 16.722 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.025 3.975 13 N -0.387 5.387 14 C 0.404 3.596 15 O -0.457 6.457 16 N -0.289 5.289 17 N -0.254 5.254 18 C 0.172 3.828 19 C -0.259 4.259 20 C -0.053 4.053 21 C -0.262 4.262 22 C -0.005 4.005 23 N -0.266 5.266 24 H 0.022 0.978 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.283 0.717 35 H 0.275 0.725 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.325 6.128 16.467 18.095 hybrid contribution -0.546 0.768 -0.931 1.325 sum -4.871 6.896 15.536 17.682 Atomic orbital electron populations 1.21831 0.97755 0.99291 0.99888 1.18380 0.92794 0.92789 0.90560 1.21831 0.98739 0.98305 0.99889 1.21016 1.31453 1.12143 0.89764 0.92257 1.24881 0.94825 0.94922 0.98892 1.69805 1.36743 1.22761 1.23170 0.86499 0.78647 0.79762 0.82895 1.19714 1.21062 1.21058 1.21680 0.98162 0.95575 0.82118 1.45545 1.55447 1.32840 1.04847 1.15894 0.80685 0.82726 0.80317 1.90983 1.43350 1.27028 1.84326 1.44564 1.52222 1.22429 1.09685 1.43251 1.52475 1.23431 1.06258 1.18193 0.90002 0.88546 0.86074 1.21203 1.05422 0.98495 1.00787 1.21274 0.94972 0.97503 0.91594 1.21815 1.05170 1.00683 0.98564 1.22384 0.91447 0.91171 0.95466 1.67046 1.27867 1.34271 0.97369 0.97846 0.89509 0.95296 0.95296 0.89506 0.97846 0.93042 0.92565 0.92571 0.77680 0.71724 0.72460 0.84636 0.84719 0.85112 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.16 9.35 55.43 0.52 -22.64 16 8 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.15 3.11 4.50 -4.04 -0.02 3.09 16 13 N -0.73 -13.00 4.92 -65.23 -0.32 -13.32 16 14 C 0.70 12.83 8.68 -86.91 -0.75 12.08 16 15 O -0.58 -12.75 17.18 5.30 0.09 -12.65 16 16 N -0.53 -7.91 6.29 27.64 0.17 -7.74 16 17 N -0.52 -6.46 6.42 31.13 0.20 -6.26 16 18 C 0.41 4.78 7.59 -155.02 -1.18 3.60 16 19 C -0.23 -2.17 9.94 -39.22 -0.39 -2.56 16 20 C -0.03 -0.21 10.17 -39.32 -0.40 -0.61 16 21 C -0.24 -1.84 10.10 -39.42 -0.40 -2.24 16 22 C 0.15 1.40 11.17 -17.57 -0.20 1.21 16 23 N -0.55 -6.53 9.37 -12.44 -0.12 -6.65 16 24 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 25 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 30 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.39 6.09 4.08 -40.82 -0.17 5.92 16 34 H 0.44 6.38 8.05 -182.60 -1.47 4.91 16 35 H 0.43 4.76 6.69 -182.60 -1.22 3.53 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -29.74 321.91 -9.93 -39.67 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.13 Total: 10.31 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -3.18 Total: -1.05 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.45 Total: -56.61 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.74 -9.93 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838756017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.459 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds