Wall clock time and date at job start Tue Mar 31 2020 00:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 C 1.50700 * 109.46976 * 240.00610 * 2 1 3 5 5 H 1.08005 * 120.00184 * 240.00150 * 4 2 1 6 6 C 1.37885 * 120.00248 * 59.99438 * 4 2 1 7 7 N 1.31517 * 119.99810 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47136 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46575 * 120.00562 * 8 6 4 11 11 H 1.48491 * 109.47164 * 240.00355 * 8 6 4 12 12 C 1.52992 * 109.47503 * 120.00556 * 2 1 3 13 13 N 1.46503 * 109.46840 * 299.99813 * 12 2 1 14 14 C 1.34782 * 119.99543 * 179.97438 * 13 12 2 15 15 O 1.21579 * 120.00419 * 359.97438 * 14 13 12 16 16 N 1.34785 * 119.99649 * 180.02562 * 14 13 12 17 17 N 1.40104 * 119.99622 * 359.97438 * 16 14 13 18 18 C 1.39001 * 119.99352 * 179.97438 * 17 16 14 19 19 C 1.39146 * 119.70404 * 179.97438 * 18 17 16 20 20 C 1.38295 * 119.09401 * 179.97438 * 19 18 17 21 21 C 1.38884 * 118.51011 * 0.02562 * 20 19 18 22 22 C 1.38022 * 119.32992 * 0.27628 * 21 20 19 23 23 N 1.31980 * 120.85123 * 359.44533 * 22 21 20 24 24 H 1.09003 * 109.46639 * 299.99470 * 1 2 3 25 25 H 1.08996 * 109.47239 * 59.99238 * 1 2 3 26 26 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47055 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47244 * 300.00754 * 3 2 1 29 29 H 1.09003 * 109.46489 * 60.00444 * 3 2 1 30 30 H 0.96994 * 119.99649 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47369 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.47362 * 59.99941 * 12 2 1 33 33 H 0.96994 * 120.00520 * 0.02562 * 13 12 2 34 34 H 0.96997 * 119.99488 * 179.97438 * 16 14 13 35 35 H 0.96994 * 120.00072 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.44826 * 0.02676 * 19 18 17 37 37 H 1.08000 * 120.74269 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.33299 * 179.97438 * 21 20 19 39 39 H 1.07989 * 119.57343 * 179.72223 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4829 7 7 0.9434 0.8304 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 3.1474 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8161 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0307 2.4453 14 6 1.8771 -0.4917 3.6694 15 8 2.5753 -1.4807 3.7809 16 7 1.4275 0.1433 4.7700 17 7 0.6224 1.2828 4.6414 18 6 0.1583 1.9373 5.7765 19 6 -0.6404 3.0687 5.6418 20 6 -1.0957 3.7097 6.7796 21 6 -0.7353 3.1965 8.0187 22 6 0.0652 2.0737 8.0786 23 7 0.4808 1.4792 6.9761 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7093 1.1620 -3.4843 31 1 3.1301 -0.7217 1.2488 32 1 1.6768 -1.7490 1.2490 33 1 0.9939 0.7576 2.3565 34 1 1.6613 -0.1886 5.6509 35 1 0.3884 1.6144 3.7605 36 1 -0.9019 3.4406 4.6622 37 1 -1.7175 4.5897 6.7060 38 1 -1.0741 3.6739 8.9263 39 1 0.3515 1.6739 9.0401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838756017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:18 Heat of formation + Delta-G solvation = 29.175423 kcal Electronic energy + Delta-G solvation = -21305.111329 eV Core-core repulsion = 18055.624969 eV Total energy + Delta-G solvation = -3249.486360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.52368 -40.76881 -38.28053 -37.37826 -34.99497 -33.26938 -33.21704 -32.39127 -29.39358 -27.57045 -27.49514 -26.71649 -24.51621 -23.71347 -22.25012 -20.76922 -20.03704 -19.45916 -17.86432 -17.48191 -16.81092 -16.77050 -16.67862 -16.54548 -15.89883 -15.40403 -15.34381 -15.02721 -14.74803 -14.68731 -14.02551 -13.87178 -13.27051 -13.11952 -12.91829 -12.72899 -12.68085 -12.57133 -12.25925 -12.14438 -11.66723 -11.50087 -11.20319 -10.77341 -10.70993 -10.51914 -10.42941 -10.38984 -9.99165 -8.45450 -8.02505 -6.17510 0.37913 0.53110 0.93356 1.42057 1.46703 1.55800 1.99521 2.01573 2.47478 3.01230 3.21625 3.30267 3.98912 4.09703 4.28872 4.35697 4.44724 4.51389 4.62388 4.70236 4.91715 4.97912 5.03478 5.06396 5.19023 5.19803 5.28618 5.30935 5.46275 5.52666 5.66852 5.68227 5.81173 6.03550 6.15094 6.21045 6.31431 6.43660 6.86256 6.94031 7.27452 7.44002 7.50377 8.96728 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.003506 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.206415 B = 7984.457865 C = 8648.598864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.164 3.836 13 N -0.721 5.721 14 C 0.705 3.295 15 O -0.624 6.624 16 N -0.521 5.521 17 N -0.525 5.525 18 C 0.381 3.619 19 C -0.234 4.234 20 C -0.030 4.030 21 C -0.227 4.227 22 C 0.133 3.867 23 N -0.575 5.575 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.400 0.600 34 H 0.439 0.561 35 H 0.436 0.564 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 9.419 18.113 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.040 3.960 13 N -0.378 5.378 14 C 0.404 3.596 15 O -0.503 6.503 16 N -0.274 5.274 17 N -0.261 5.261 18 C 0.147 3.853 19 C -0.260 4.260 20 C -0.056 4.056 21 C -0.250 4.250 22 C -0.023 4.023 23 N -0.294 5.294 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.238 0.762 34 H 0.285 0.715 35 H 0.281 0.719 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.597 7.928 17.914 20.374 hybrid contribution -0.234 0.327 -1.199 1.264 sum -5.831 8.255 16.716 19.534 Atomic orbital electron populations 1.21674 0.96996 0.98770 1.00377 1.18366 0.93329 0.93083 0.90066 1.21674 0.98022 0.97742 1.00378 1.21290 1.31702 1.12201 0.91477 0.93664 1.25423 0.95133 0.95594 1.00872 1.69899 1.36982 1.23203 1.23560 0.85714 0.78109 0.78730 0.80284 1.20089 1.20767 1.20759 1.21255 0.97098 0.94905 0.82790 1.45184 1.55619 1.33028 1.03946 1.15858 0.80478 0.82435 0.80796 1.90950 1.45225 1.28975 1.85116 1.44201 1.51677 1.22964 1.08571 1.43260 1.52971 1.22794 1.07052 1.18483 0.91393 0.89631 0.85838 1.21494 1.04528 0.97556 1.02384 1.21734 0.94674 0.98135 0.91017 1.22215 1.03334 0.99556 0.99869 1.22871 0.91959 0.91955 0.95556 1.66996 1.28798 1.35449 0.98187 0.94574 0.91678 0.96277 0.96276 0.91676 0.94573 0.93011 0.94105 0.94114 0.76242 0.71512 0.71906 0.82919 0.81590 0.82168 0.80690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 4 C -0.53 -27.60 8.01 25.60 0.21 -27.39 16 5 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.54 5.15 84.66 0.44 1.98 16 7 N -0.90 -46.87 9.35 21.45 0.20 -46.67 16 8 Si 0.94 42.24 29.54 68.60 2.03 44.26 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.16 6.96 4.50 86.38 0.39 7.35 16 13 N -0.72 -25.18 4.92 -478.54 -2.36 -27.54 16 14 C 0.71 25.62 8.68 179.05 1.55 27.18 16 15 O -0.62 -27.82 17.18 -3.96 -0.07 -27.88 16 16 N -0.52 -15.23 6.29 -184.74 -1.16 -16.39 16 17 N -0.53 -12.36 6.42 -55.43 -0.36 -12.71 16 18 C 0.38 8.33 7.59 133.07 1.01 9.34 16 19 C -0.23 -3.75 9.94 22.50 0.22 -3.52 16 20 C -0.03 -0.36 10.17 22.44 0.23 -0.13 16 21 C -0.23 -2.71 10.10 22.37 0.23 -2.49 16 22 C 0.13 2.15 11.17 84.62 0.95 3.10 16 23 N -0.58 -13.03 9.37 -193.26 -1.81 -14.84 16 24 H 0.04 1.27 6.86 -2.39 -0.02 1.26 16 25 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 29 H 0.04 1.27 6.86 -2.39 -0.02 1.26 16 30 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.40 11.89 4.08 -92.71 -0.38 11.51 16 34 H 0.44 12.77 8.05 -213.32 -1.72 11.06 16 35 H 0.44 8.85 6.69 -213.33 -1.43 7.43 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 38 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.18 1.88 8.06 -2.92 -0.02 1.86 16 Total: -1.00 -64.60 321.91 0.40 -64.20 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -2.43 Total: 29.05 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.35 Total: 8.52 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -5.48 Total: -118.15 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -64.60 0.40 -64.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838756017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.374 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds