Wall clock time and date at job start Tue Mar 31 2020 00:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.50699 * 109.46874 * 239.99285 * 2 1 3 5 5 H 1.08001 * 119.99981 * 239.99875 * 4 2 1 6 6 C 1.37876 * 119.99570 * 60.00616 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47055 * 119.99859 * 8 6 4 11 11 H 1.48498 * 109.47283 * 239.99935 * 8 6 4 12 12 C 1.53004 * 109.46866 * 119.99936 * 2 1 3 13 13 N 1.46504 * 109.46928 * 299.99525 * 12 2 1 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 N 1.31792 * 119.12382 * 269.72727 * 18 17 16 20 20 C 1.32330 * 120.82033 * 179.75851 * 19 18 17 21 21 C 1.38596 * 119.10334 * 0.50985 * 20 19 18 22 22 C 1.38595 * 118.39999 * 359.74393 * 21 20 19 23 23 N 1.31801 * 119.12263 * 89.99933 * 18 17 16 24 24 H 1.09007 * 109.47177 * 300.00073 * 1 2 3 25 25 H 1.08994 * 109.47297 * 60.00189 * 1 2 3 26 26 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47144 * 299.99487 * 3 2 1 29 29 H 1.08998 * 109.47717 * 59.99943 * 3 2 1 30 30 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47202 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.47419 * 59.99682 * 12 2 1 33 33 H 0.97000 * 120.00410 * 0.02562 * 13 12 2 34 34 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 35 35 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 36 36 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 37 37 H 1.08008 * 120.44763 * 180.23408 * 20 19 18 38 38 H 1.07999 * 120.79957 * 179.77412 * 21 20 19 39 39 H 1.07999 * 120.44628 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 3.1471 -2.2867 -3.6036 10 1 1.1676 -1.5869 -4.8164 11 1 3.1472 -0.1862 -4.8160 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5757 -1.4799 3.7812 16 7 1.4230 0.1409 4.7700 17 6 1.7715 -0.3633 6.1006 18 6 1.1429 0.5153 7.1513 19 7 1.8173 1.5512 7.6084 20 6 1.2958 2.3477 8.5275 21 6 0.0281 2.0737 9.0162 22 6 -0.6478 0.9725 8.5149 23 7 -0.0644 0.2241 7.5925 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7082 1.1607 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2494 33 1 0.9937 0.7580 2.3564 34 1 0.8656 0.9298 4.6810 35 1 1.4016 -1.3828 6.2111 36 1 2.8548 -0.3551 6.2201 37 1 1.8524 3.1972 8.8952 38 1 -0.4223 2.7034 9.7692 39 1 -1.6375 0.7287 8.8719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852377242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:15 Heat of formation + Delta-G solvation = 17.806866 kcal Electronic energy + Delta-G solvation = -20973.648841 eV Core-core repulsion = 17723.669503 eV Total energy + Delta-G solvation = -3249.979338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42171 -39.49138 -36.52458 -34.89342 -34.09669 -33.24061 -32.24859 -30.71789 -27.55456 -25.67994 -25.45860 -24.93508 -24.58582 -22.83360 -20.62350 -18.74071 -18.44372 -17.92309 -17.19674 -16.12172 -15.80437 -15.51712 -15.14508 -14.91851 -14.64886 -14.03119 -13.99264 -13.57073 -13.30564 -13.05054 -12.81262 -12.41696 -12.13467 -11.34082 -11.24868 -11.22034 -11.16616 -10.84304 -10.62506 -10.34483 -10.20043 -10.13016 -9.71539 -9.61168 -9.58682 -9.26717 -8.99949 -8.74120 -8.38456 -8.15513 -5.98814 -4.08487 0.39625 0.70204 2.93243 3.29906 3.38379 3.43200 3.44477 3.64844 3.65624 3.79314 4.19080 4.42120 4.57097 4.67196 4.76550 4.92635 5.23747 5.28095 5.59077 5.59783 5.96501 6.25024 6.41737 6.52813 6.56136 6.59266 6.84286 6.87484 6.94950 7.07985 7.13846 7.31487 7.44540 7.60239 7.70278 7.73643 8.05306 8.16557 8.41807 8.49768 8.91724 9.06150 9.57206 11.02696 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.003016 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.739482 B = 9282.797283 C = 9505.341158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.703 3.297 15 O -0.597 6.597 16 N -0.746 5.746 17 C 0.213 3.787 18 C 0.306 3.694 19 N -0.502 5.502 20 C 0.147 3.853 21 C -0.226 4.226 22 C 0.147 3.853 23 N -0.502 5.502 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.171 0.829 38 H 0.150 0.850 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 5.547 21.580 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.028 3.972 13 N -0.385 5.385 14 C 0.403 3.597 15 O -0.475 6.475 16 N -0.404 5.404 17 C 0.086 3.914 18 C 0.038 3.962 19 N -0.216 5.216 20 C -0.019 4.019 21 C -0.248 4.248 22 C -0.019 4.019 23 N -0.216 5.216 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.228 0.772 34 H 0.226 0.774 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.188 0.812 38 H 0.167 0.833 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.969 4.119 20.805 21.416 hybrid contribution -0.732 1.030 -0.077 1.266 sum -3.701 5.149 20.729 21.677 Atomic orbital electron populations 1.21819 0.97793 0.99178 0.99963 1.18371 0.92793 0.92781 0.90582 1.21819 0.98602 0.98368 0.99965 1.21038 1.31280 1.12045 0.89848 0.92308 1.24882 0.94900 0.94938 0.98855 1.69817 1.36826 1.22860 1.23052 0.86517 0.78621 0.79763 0.82987 1.19724 1.21107 1.21101 1.21601 0.97942 0.95434 0.82267 1.45482 1.55549 1.33046 1.04461 1.15933 0.80463 0.82872 0.80462 1.90894 1.43108 1.27576 1.85971 1.44862 1.57854 1.33593 1.04060 1.19642 0.99624 0.94862 0.77251 1.23241 0.87284 0.90959 0.94763 1.68328 1.37245 1.04745 1.11331 1.23333 0.92370 0.96353 0.89859 1.22997 0.97811 1.00594 1.03415 1.23332 0.99481 0.89353 0.89748 1.68334 1.10938 1.30746 1.11624 0.97584 0.89675 0.95418 0.95419 0.89677 0.97580 0.93119 0.92860 0.92861 0.77203 0.77392 0.89017 0.89008 0.81209 0.83270 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.98 8.08 37.15 0.30 -2.68 16 4 C -0.50 -13.36 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.85 9.35 55.43 0.52 -23.34 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 13 N -0.73 -13.64 4.96 -65.22 -0.32 -13.96 16 14 C 0.70 13.04 8.57 -86.92 -0.74 12.30 16 15 O -0.60 -13.24 16.34 5.28 0.09 -13.16 16 16 N -0.75 -10.77 5.55 -66.41 -0.37 -11.14 16 17 C 0.21 2.79 6.11 -5.19 -0.03 2.76 16 18 C 0.31 3.56 7.01 -157.19 -1.10 2.46 16 19 N -0.50 -5.46 10.33 -10.72 -0.11 -5.57 16 20 C 0.15 1.08 11.30 -17.20 -0.19 0.88 16 21 C -0.23 -1.29 10.17 -39.32 -0.40 -1.69 16 22 C 0.15 1.08 11.30 -17.20 -0.19 0.88 16 23 N -0.50 -5.47 10.34 -10.73 -0.11 -5.58 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.39 6.64 6.18 -40.82 -0.25 6.39 16 34 H 0.39 4.96 8.48 -40.82 -0.35 4.61 16 35 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -31.62 326.12 -8.23 -39.85 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.29 Total: 7.30 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.53 Total: 4.76 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.40 Total: -59.59 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.62 -8.23 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852377242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.660 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds