Wall clock time and date at job start Tue Mar 31 2020 00:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.50699 * 109.46874 * 239.99285 * 2 1 3 5 5 H 1.08001 * 119.99981 * 239.99875 * 4 2 1 6 6 C 1.37876 * 119.99570 * 60.00616 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47055 * 119.99859 * 8 6 4 11 11 H 1.48498 * 109.47283 * 239.99935 * 8 6 4 12 12 C 1.53004 * 109.46866 * 119.99936 * 2 1 3 13 13 N 1.46504 * 109.46928 * 299.99525 * 12 2 1 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 N 1.31792 * 119.12382 * 269.72727 * 18 17 16 20 20 C 1.32330 * 120.82033 * 179.75851 * 19 18 17 21 21 C 1.38596 * 119.10334 * 0.50985 * 20 19 18 22 22 C 1.38595 * 118.39999 * 359.74393 * 21 20 19 23 23 N 1.31801 * 119.12263 * 89.99933 * 18 17 16 24 24 H 1.09007 * 109.47177 * 300.00073 * 1 2 3 25 25 H 1.08994 * 109.47297 * 60.00189 * 1 2 3 26 26 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47144 * 299.99487 * 3 2 1 29 29 H 1.08998 * 109.47717 * 59.99943 * 3 2 1 30 30 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47202 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.47419 * 59.99682 * 12 2 1 33 33 H 0.97000 * 120.00410 * 0.02562 * 13 12 2 34 34 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 35 35 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 36 36 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 37 37 H 1.08008 * 120.44763 * 180.23408 * 20 19 18 38 38 H 1.07999 * 120.79957 * 179.77412 * 21 20 19 39 39 H 1.07999 * 120.44628 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 3.1471 -2.2867 -3.6036 10 1 1.1676 -1.5869 -4.8164 11 1 3.1472 -0.1862 -4.8160 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5757 -1.4799 3.7812 16 7 1.4230 0.1409 4.7700 17 6 1.7715 -0.3633 6.1006 18 6 1.1429 0.5153 7.1513 19 7 1.8173 1.5512 7.6084 20 6 1.2958 2.3477 8.5275 21 6 0.0281 2.0737 9.0162 22 6 -0.6478 0.9725 8.5149 23 7 -0.0644 0.2241 7.5925 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7082 1.1607 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2494 33 1 0.9937 0.7580 2.3564 34 1 0.8656 0.9298 4.6810 35 1 1.4016 -1.3828 6.2111 36 1 2.8548 -0.3551 6.2201 37 1 1.8524 3.1972 8.8952 38 1 -0.4223 2.7034 9.7692 39 1 -1.6375 0.7287 8.8719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852377242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:15 Heat of formation + Delta-G solvation = -4.586182 kcal Electronic energy + Delta-G solvation = -20974.619877 eV Core-core repulsion = 17723.669503 eV Total energy + Delta-G solvation = -3250.950373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09644 -40.97724 -38.28232 -36.11782 -34.99833 -34.74768 -33.25406 -32.42260 -28.65183 -27.55099 -27.36993 -26.27377 -25.51336 -23.66748 -22.10166 -20.58717 -19.81742 -18.59785 -18.05959 -17.75692 -17.15709 -16.62846 -16.60112 -16.13875 -15.88237 -15.33744 -15.03490 -14.94309 -14.68028 -14.44820 -14.01899 -13.92190 -13.82677 -13.17304 -13.09499 -12.67695 -12.55409 -12.24050 -12.12702 -11.91018 -11.86872 -11.47118 -11.46538 -11.16544 -10.68945 -10.58920 -10.43052 -10.35176 -10.26176 -9.71422 -8.01050 -6.16537 -0.24017 0.14045 1.42704 1.46617 1.56254 1.73006 2.16616 2.47318 2.72321 2.81024 3.19044 3.22671 3.41528 3.75317 4.01791 4.19029 4.37757 4.42109 4.44923 4.55792 4.62241 4.72755 4.90966 5.01156 5.07196 5.11791 5.21796 5.30742 5.39034 5.41192 5.62135 5.68417 5.68983 5.94242 6.03787 6.16168 6.23090 6.45115 6.87957 7.04490 7.07592 7.51137 7.57588 8.98261 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.003016 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.739482 B = 9282.797283 C = 9505.341158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.167 3.833 13 N -0.724 5.724 14 C 0.703 3.297 15 O -0.635 6.635 16 N -0.727 5.727 17 C 0.215 3.785 18 C 0.288 3.712 19 N -0.528 5.528 20 C 0.134 3.866 21 C -0.201 4.201 22 C 0.134 3.866 23 N -0.528 5.528 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.404 0.596 34 H 0.405 0.595 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 7.066 23.487 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.403 3.597 15 O -0.517 6.517 16 N -0.384 5.384 17 C 0.089 3.911 18 C 0.019 3.981 19 N -0.243 5.243 20 C -0.031 4.031 21 C -0.222 4.222 22 C -0.031 4.031 23 N -0.243 5.243 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.241 0.759 34 H 0.240 0.760 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.218 0.782 38 H 0.209 0.791 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.086 5.687 22.753 23.806 hybrid contribution -0.445 0.627 -0.523 0.930 sum -4.531 6.315 22.230 23.549 Atomic orbital electron populations 1.21662 0.97141 0.98684 1.00263 1.18361 0.93243 0.93035 0.90235 1.21662 0.97963 0.97861 1.00264 1.21307 1.31608 1.12145 0.91507 0.93626 1.25456 0.95151 0.95604 1.00983 1.69915 1.37083 1.23373 1.23526 0.85690 0.78116 0.78729 0.80167 1.19980 1.20726 1.20715 1.21164 0.96837 0.94728 0.82975 1.45185 1.55740 1.33208 1.03784 1.16010 0.80130 0.82539 0.81028 1.90869 1.44865 1.29411 1.86567 1.44674 1.56844 1.33243 1.03620 1.19565 0.99332 0.95130 0.77068 1.22691 0.88101 0.91780 0.95528 1.68256 1.38056 1.05186 1.12815 1.23971 0.93494 0.96547 0.89052 1.23431 0.96602 0.99626 1.02550 1.23970 1.00689 0.89469 0.88939 1.68263 1.10835 1.32085 1.13132 0.94661 0.91859 0.96262 0.96259 0.91862 0.94657 0.93049 0.94425 0.94430 0.75907 0.76020 0.89913 0.89896 0.78175 0.79078 0.78182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.84 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 3 C -0.12 -5.43 8.08 71.98 0.58 -4.84 16 4 C -0.53 -28.33 8.01 25.60 0.21 -28.12 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.47 5.15 84.65 0.44 1.91 16 7 N -0.90 -48.45 9.35 21.45 0.20 -48.24 16 8 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.17 7.40 4.50 86.38 0.39 7.79 16 13 N -0.72 -26.57 4.96 -478.52 -2.37 -28.94 16 14 C 0.70 26.05 8.57 179.06 1.53 27.59 16 15 O -0.64 -28.73 16.34 -4.01 -0.07 -28.80 16 16 N -0.73 -20.70 5.55 -482.29 -2.68 -23.38 16 17 C 0.22 5.73 6.11 85.63 0.52 6.25 16 18 C 0.29 6.50 7.01 138.75 0.97 7.48 16 19 N -0.53 -10.80 10.33 -187.84 -1.94 -12.74 16 20 C 0.13 1.58 11.30 84.70 0.96 2.54 16 21 C -0.20 -1.49 10.17 22.44 0.23 -1.27 16 22 C 0.13 1.58 11.30 84.70 0.96 2.54 16 23 N -0.53 -10.80 10.34 -187.85 -1.94 -12.74 16 24 H 0.03 1.34 6.86 -2.38 -0.02 1.33 16 25 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 29 H 0.03 1.34 6.86 -2.39 -0.02 1.33 16 30 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.40 12.95 6.18 -92.71 -0.57 12.38 16 34 H 0.40 9.73 8.48 -92.71 -0.79 8.94 16 35 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 39 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -69.40 326.12 0.29 -69.12 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.28 Total: 21.15 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 7.34 Total: 19.45 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -8.73 Total: -126.05 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.07 Total: -28.80 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -69.40 0.29 -69.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852377242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.532 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds