Wall clock time and date at job start Tue Mar 31 2020 00:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 C 1.53005 * 109.46947 * 240.00437 * 2 1 3 5 5 C 1.50697 * 109.47279 * 59.99680 * 4 2 1 6 6 H 1.08002 * 119.99869 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00509 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99389 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00410 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46862 * 120.00265 * 9 7 5 12 12 H 1.48505 * 109.46757 * 239.99964 * 9 7 5 13 13 C 1.52994 * 109.47366 * 120.00659 * 2 1 3 14 14 N 1.46507 * 109.46703 * 299.99207 * 13 2 1 15 15 C 1.34774 * 119.99769 * 179.97438 * 14 13 2 16 16 O 1.21570 * 120.00349 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.38895 * 119.99732 * 180.02562 * 17 15 14 19 19 N 1.32408 * 119.20800 * 359.72198 * 18 17 15 20 20 C 1.32285 * 120.75139 * 179.71765 * 19 18 17 21 21 C 1.38608 * 119.18114 * 0.55167 * 20 19 18 22 22 C 1.38609 * 118.54054 * 359.72814 * 21 20 19 23 23 N 1.32274 * 119.18670 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46648 * 299.99957 * 1 2 3 25 25 H 1.08998 * 109.47444 * 59.99586 * 1 2 3 26 26 H 1.08992 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47265 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47134 * 300.00604 * 3 2 1 29 29 H 1.08996 * 109.46568 * 60.00317 * 3 2 1 30 30 H 1.09002 * 109.47494 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46988 * 299.99922 * 4 2 1 32 32 H 0.97005 * 120.00108 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47498 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47456 * 59.99435 * 13 2 1 35 35 H 0.96999 * 120.00180 * 0.02562 * 14 13 2 36 36 H 0.96999 * 120.00047 * 359.97438 * 17 15 14 37 37 H 1.07993 * 120.41212 * 180.29577 * 20 19 18 38 38 H 1.08002 * 120.73121 * 179.74995 * 21 20 19 39 39 H 1.08007 * 120.40577 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8701 -0.4820 -3.7321 8 7 2.6262 -1.5512 -3.8528 9 14 1.2479 0.3991 -5.2572 10 1 0.4234 1.5660 -4.8530 11 1 2.4032 0.8648 -6.0657 12 1 0.4222 -0.5338 -6.0654 13 6 2.0400 -0.7214 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4915 3.6694 16 8 2.5759 -1.4800 3.7809 17 7 1.4275 0.1435 4.7699 18 6 1.7631 -0.3311 6.0313 19 7 2.5210 -1.4119 6.1344 20 6 2.8637 -1.8871 7.3205 21 6 2.4097 -1.2458 8.4624 22 6 1.6136 -0.1204 8.3177 23 7 1.3132 0.3053 7.1019 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7208 -1.2497 31 1 1.6766 -1.7489 -1.2494 32 1 2.8600 -1.8831 -4.7338 33 1 3.1300 -0.7210 1.2493 34 1 1.6767 -1.7489 1.2491 35 1 0.9939 0.7578 2.3564 36 1 0.8702 0.9325 4.6810 37 1 3.4860 -2.7663 7.3982 38 1 2.6709 -1.6146 9.4433 39 1 1.2437 0.4029 9.1871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888699801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:46 Heat of formation + Delta-G solvation = 27.814540 kcal Electronic energy + Delta-G solvation = -21084.019402 eV Core-core repulsion = 17834.474030 eV Total energy + Delta-G solvation = -3249.545373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.40476 -39.76884 -37.32247 -35.00852 -33.91013 -33.59593 -32.14385 -30.85585 -27.14907 -26.52237 -26.32402 -24.89150 -24.05304 -22.74694 -20.94656 -19.08460 -18.75137 -17.67375 -16.77272 -16.33866 -16.07261 -15.95973 -15.11100 -14.72265 -14.61475 -14.32792 -14.07383 -13.65429 -13.62089 -13.08380 -12.76806 -12.26200 -12.07346 -11.35672 -11.27575 -11.05504 -11.02795 -10.95770 -10.84147 -10.64946 -10.41750 -10.24923 -10.09695 -9.88954 -9.24530 -9.10422 -8.98517 -8.92681 -8.63159 -8.36478 -6.00330 -4.01584 0.78586 0.95492 2.18775 3.16094 3.30001 3.38185 3.40389 3.81508 3.86257 4.00608 4.43051 4.45119 4.62157 4.92853 4.96591 5.35346 5.43707 5.52758 5.61984 5.72931 5.84008 6.16065 6.16234 6.22774 6.33931 6.38880 6.53099 6.60022 6.62187 6.75425 6.91671 7.04979 7.06760 7.11742 7.63906 7.73874 7.75901 7.98445 8.16903 8.39856 8.61742 9.03420 9.61628 11.11169 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053907 B = 0.002964 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.288432 B = 9443.578454 C = 9766.493342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.729 5.729 15 C 0.693 3.307 16 O -0.526 6.526 17 N -0.651 5.651 18 C 0.558 3.442 19 N -0.498 5.498 20 C 0.178 3.822 21 C -0.273 4.273 22 C 0.178 3.822 23 N -0.557 5.557 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.259 0.741 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.417 0.583 37 H 0.170 0.830 38 H 0.146 0.854 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 4.165 22.906 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.024 3.976 14 N -0.385 5.385 15 C 0.391 3.609 16 O -0.396 6.396 17 N -0.302 5.302 18 C 0.201 3.799 19 N -0.218 5.218 20 C 0.010 3.990 21 C -0.297 4.297 22 C 0.011 3.989 23 N -0.278 5.278 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.254 0.746 37 H 0.187 0.813 38 H 0.164 0.836 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.442 3.464 21.756 22.165 hybrid contribution -0.628 0.890 -0.104 1.094 sum -3.070 4.354 21.653 22.298 Atomic orbital electron populations 1.21763 0.95232 1.01219 1.00217 1.20928 0.95524 0.95908 0.94916 1.21765 1.00604 0.95849 1.00217 1.19100 0.96438 0.95272 0.89370 1.21213 1.31138 1.12036 0.90482 0.92195 1.25017 0.95326 0.95090 0.99102 1.69977 1.36979 1.23048 1.23343 0.86592 0.78595 0.79672 0.83458 1.19813 1.21138 1.21143 1.21590 0.98898 0.95748 0.81390 1.45407 1.55864 1.33204 1.04044 1.15944 0.81338 0.83457 0.80130 1.91059 1.39034 1.25003 1.84490 1.42365 1.53695 1.32248 1.01911 1.19106 0.88465 0.87022 0.85275 1.68589 1.14025 1.11692 1.27444 1.23282 0.92380 0.96842 0.86489 1.22739 1.04869 1.00542 1.01599 1.22924 0.90486 0.91893 0.93595 1.67767 1.27124 1.34012 0.98870 0.95305 0.91390 0.93299 0.93296 0.91396 0.95297 0.96241 0.96240 0.93083 0.91650 0.91647 0.76945 0.74559 0.81289 0.83576 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.42 7.65 -34.44 -0.26 -13.69 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.15 2.57 4.56 -4.04 -0.02 2.55 16 14 N -0.73 -10.56 4.96 -65.23 -0.32 -10.88 16 15 C 0.69 11.04 8.53 -86.92 -0.74 10.30 16 16 O -0.53 -10.52 14.54 5.30 0.08 -10.44 16 17 N -0.65 -8.44 5.40 -17.49 -0.09 -8.53 16 18 C 0.56 7.70 8.38 -322.30 -2.70 5.00 16 19 N -0.50 -7.37 7.87 -13.84 -0.11 -7.48 16 20 C 0.18 1.83 11.30 -17.22 -0.19 1.64 16 21 C -0.27 -2.03 10.16 -39.31 -0.40 -2.43 16 22 C 0.18 1.46 11.30 -17.22 -0.19 1.26 16 23 N -0.56 -6.38 10.46 -13.84 -0.14 -6.53 16 24 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.40 4.69 6.18 -40.82 -0.25 4.44 16 36 H 0.42 4.02 8.83 -40.82 -0.36 3.66 16 37 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -33.96 324.37 -9.45 -43.41 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.25 Total: 3.41 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -4.21 Total: 1.64 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.06 Total: -59.01 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.96 -9.45 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888699801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.223 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds