Wall clock time and date at job start Tue Mar 31 2020 00:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 C 1.53005 * 109.46947 * 240.00437 * 2 1 3 5 5 C 1.50697 * 109.47279 * 59.99680 * 4 2 1 6 6 H 1.08002 * 119.99869 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00509 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99389 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00410 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46862 * 120.00265 * 9 7 5 12 12 H 1.48505 * 109.46757 * 239.99964 * 9 7 5 13 13 C 1.52994 * 109.47366 * 120.00659 * 2 1 3 14 14 N 1.46507 * 109.46703 * 299.99207 * 13 2 1 15 15 C 1.34774 * 119.99769 * 179.97438 * 14 13 2 16 16 O 1.21570 * 120.00349 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.38895 * 119.99732 * 180.02562 * 17 15 14 19 19 N 1.32408 * 119.20800 * 359.72198 * 18 17 15 20 20 C 1.32285 * 120.75139 * 179.71765 * 19 18 17 21 21 C 1.38608 * 119.18114 * 0.55167 * 20 19 18 22 22 C 1.38609 * 118.54054 * 359.72814 * 21 20 19 23 23 N 1.32274 * 119.18670 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46648 * 299.99957 * 1 2 3 25 25 H 1.08998 * 109.47444 * 59.99586 * 1 2 3 26 26 H 1.08992 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47265 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47134 * 300.00604 * 3 2 1 29 29 H 1.08996 * 109.46568 * 60.00317 * 3 2 1 30 30 H 1.09002 * 109.47494 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46988 * 299.99922 * 4 2 1 32 32 H 0.97005 * 120.00108 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47498 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47456 * 59.99435 * 13 2 1 35 35 H 0.96999 * 120.00180 * 0.02562 * 14 13 2 36 36 H 0.96999 * 120.00047 * 359.97438 * 17 15 14 37 37 H 1.07993 * 120.41212 * 180.29577 * 20 19 18 38 38 H 1.08002 * 120.73121 * 179.74995 * 21 20 19 39 39 H 1.08007 * 120.40577 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8701 -0.4820 -3.7321 8 7 2.6262 -1.5512 -3.8528 9 14 1.2479 0.3991 -5.2572 10 1 0.4234 1.5660 -4.8530 11 1 2.4032 0.8648 -6.0657 12 1 0.4222 -0.5338 -6.0654 13 6 2.0400 -0.7214 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4915 3.6694 16 8 2.5759 -1.4800 3.7809 17 7 1.4275 0.1435 4.7699 18 6 1.7631 -0.3311 6.0313 19 7 2.5210 -1.4119 6.1344 20 6 2.8637 -1.8871 7.3205 21 6 2.4097 -1.2458 8.4624 22 6 1.6136 -0.1204 8.3177 23 7 1.3132 0.3053 7.1019 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7208 -1.2497 31 1 1.6766 -1.7489 -1.2494 32 1 2.8600 -1.8831 -4.7338 33 1 3.1300 -0.7210 1.2493 34 1 1.6767 -1.7489 1.2491 35 1 0.9939 0.7578 2.3564 36 1 0.8702 0.9325 4.6810 37 1 3.4860 -2.7663 7.3982 38 1 2.6709 -1.6146 9.4433 39 1 1.2437 0.4029 9.1871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888699801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:44 Heat of formation + Delta-G solvation = 5.675721 kcal Electronic energy + Delta-G solvation = -21084.979414 eV Core-core repulsion = 17834.474030 eV Total energy + Delta-G solvation = -3250.505384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -42.29713 -40.92230 -38.81395 -36.09586 -35.29401 -34.64277 -33.94480 -31.73480 -29.08316 -27.94268 -27.70509 -25.71893 -25.27628 -24.31298 -22.14252 -20.34376 -19.81576 -18.95906 -18.34169 -17.71070 -17.06361 -16.86243 -16.53104 -16.10945 -15.86828 -15.50305 -15.25158 -15.07061 -14.67612 -14.36814 -14.26318 -13.92565 -13.82751 -12.89829 -12.68942 -12.60443 -12.32618 -12.23830 -12.17435 -12.02938 -11.94115 -11.86219 -11.52298 -11.30464 -10.98479 -10.84147 -10.50809 -10.19170 -9.98095 -9.62115 -8.12825 -6.20293 -0.00287 0.24327 1.14928 1.42560 1.43797 1.55346 2.01113 2.44945 2.83444 2.96217 3.21983 3.26502 3.73818 3.85088 3.97174 4.10209 4.23709 4.31921 4.43766 4.69330 4.74350 4.76060 4.87853 4.98459 5.08196 5.10488 5.14632 5.36704 5.46315 5.52644 5.53951 5.55092 5.58699 5.63612 5.82220 5.91812 6.15895 6.32198 6.71271 6.95285 7.27231 7.45366 7.47454 8.99999 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053907 B = 0.002964 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.288432 B = 9443.578454 C = 9766.493342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.714 5.714 15 C 0.696 3.304 16 O -0.572 6.572 17 N -0.640 5.640 18 C 0.529 3.471 19 N -0.549 5.549 20 C 0.154 3.846 21 C -0.246 4.246 22 C 0.171 3.829 23 N -0.561 5.561 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.070 0.930 30 H -0.013 1.013 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.412 0.588 36 H 0.432 0.568 37 H 0.188 0.812 38 H 0.190 0.810 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 6.281 25.379 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.180 1.180 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.038 3.962 14 N -0.371 5.371 15 C 0.395 3.605 16 O -0.445 6.445 17 N -0.293 5.293 18 C 0.172 3.828 19 N -0.269 5.269 20 C -0.012 4.012 21 C -0.269 4.269 22 C 0.005 3.995 23 N -0.283 5.283 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.250 0.750 36 H 0.272 0.728 37 H 0.205 0.795 38 H 0.207 0.793 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.972 5.632 24.292 25.250 hybrid contribution -0.129 0.183 -0.662 0.699 sum -4.101 5.814 23.629 24.677 Atomic orbital electron populations 1.21700 0.93503 1.01025 1.01697 1.20712 0.96771 0.96335 0.92539 1.21702 0.99959 0.94568 1.01697 1.18982 0.94387 0.94270 0.92227 1.21623 1.30261 1.12001 0.91002 0.90834 1.25949 0.95726 0.95889 1.02731 1.70132 1.38883 1.25032 1.23996 0.85494 0.78018 0.78833 0.79283 1.17980 1.21129 1.21136 1.21147 0.97751 0.95073 0.82266 1.45012 1.55869 1.33389 1.02851 1.15993 0.80783 0.82970 0.80773 1.91027 1.41098 1.27138 1.85283 1.42018 1.53643 1.32415 1.01234 1.19245 0.89878 0.87845 0.85844 1.68467 1.15449 1.12912 1.30115 1.23776 0.93071 0.97879 0.86429 1.23171 1.02319 0.99047 1.02400 1.23794 0.89898 0.92196 0.93606 1.67835 1.27101 1.33951 0.99394 0.91151 0.92472 0.94410 0.94407 0.92478 0.91143 0.99452 0.99453 0.93212 0.93434 0.93436 0.74995 0.72809 0.79523 0.79304 0.76962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.22 7.65 25.60 0.20 -27.03 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 13 C 0.16 5.81 4.56 86.38 0.39 6.21 16 14 N -0.71 -20.05 4.96 -478.56 -2.37 -22.42 16 15 C 0.70 22.19 8.53 179.06 1.53 23.71 16 16 O -0.57 -23.65 14.54 -3.94 -0.06 -23.71 16 17 N -0.64 -16.12 5.40 -327.51 -1.77 -17.89 16 18 C 0.53 14.24 8.38 261.31 2.19 16.43 16 19 N -0.55 -16.25 7.87 -197.70 -1.56 -17.81 16 20 C 0.15 2.99 11.30 84.71 0.96 3.94 16 21 C -0.25 -2.83 10.16 22.45 0.23 -2.60 16 22 C 0.17 2.21 11.30 84.72 0.96 3.16 16 23 N -0.56 -11.73 10.46 -197.70 -2.07 -13.80 16 24 H 0.07 1.73 6.86 -2.38 -0.02 1.71 16 25 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 29 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 32 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.41 8.66 6.18 -92.71 -0.57 8.09 16 36 H 0.43 7.61 8.83 -92.71 -0.82 6.79 16 37 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -78.34 324.37 2.34 -76.00 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.31 Total: 14.22 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 8.16 Total: 16.75 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.48 Total: -128.88 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.06 Total: -23.71 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -78.34 2.34 -76.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888699801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.674 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds