Wall clock time and date at job start Tue Mar 31 2020 00:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.09000 * 115.56577 * 29.30472 * 3 2 1 5 5 C 1.53002 * 117.49855 * 243.62021 * 3 2 1 6 6 C 1.53003 * 117.49946 * 174.99721 * 3 2 1 7 7 H 1.08998 * 117.49641 * 359.97438 * 6 3 2 8 8 C 1.52998 * 117.50145 * 214.97533 * 6 3 2 9 9 N 1.46493 * 109.47514 * 174.99809 * 8 6 3 10 10 C 1.35315 * 125.86985 * 125.00119 * 9 8 6 11 11 C 1.35350 * 106.17375 * 180.02562 * 10 9 8 12 12 C 1.50708 * 126.74605 * 180.02562 * 11 10 9 13 13 N 1.46492 * 109.47125 * 94.98102 * 12 11 10 14 14 C 1.34780 * 119.99895 * 180.02562 * 13 12 11 15 15 O 1.21691 * 119.99870 * 359.97438 * 14 13 12 16 16 C 1.46375 * 119.99984 * 179.97438 * 14 13 12 17 17 H 1.07998 * 119.99944 * 353.93773 * 16 14 13 18 18 C 1.40050 * 119.99800 * 173.93385 * 16 14 13 19 19 N 1.30673 * 120.00127 * 6.15278 * 18 16 14 20 20 Si 1.86800 * 120.00112 * 186.14768 * 18 16 14 21 21 H 1.48495 * 109.46952 * 94.98381 * 20 18 16 22 22 H 1.48494 * 109.47464 * 214.98968 * 20 18 16 23 23 H 1.48506 * 109.46871 * 334.98873 * 20 18 16 24 24 N 1.33772 * 106.49982 * 359.97438 * 11 10 9 25 25 N 1.28629 * 108.88340 * 0.02562 * 24 11 10 26 26 H 1.08995 * 109.47231 * 300.00730 * 1 2 3 27 27 H 1.09006 * 109.46402 * 60.00283 * 1 2 3 28 28 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47652 * 239.99918 * 2 1 3 30 30 H 1.09000 * 109.46947 * 119.99298 * 2 1 3 31 31 H 1.08997 * 117.50597 * 145.02214 * 5 3 2 32 32 H 1.09006 * 117.49883 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.46656 * 55.00326 * 8 6 3 34 34 H 1.08999 * 109.46989 * 295.00602 * 8 6 3 35 35 H 1.07998 * 126.91008 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.46431 * 214.97527 * 12 11 10 37 37 H 1.08997 * 109.46978 * 334.97272 * 12 11 10 38 38 H 0.97003 * 120.00681 * 359.97438 * 13 12 11 39 39 H 0.97000 * 119.99778 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4813 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6579 0.1184 7 1 4.1803 0.7719 0.1966 8 6 4.0301 2.8804 0.9032 9 7 5.4910 2.8513 1.0073 10 6 6.3330 3.8391 0.6250 11 6 7.5826 3.3960 0.8976 12 6 8.8740 4.1336 0.6539 13 7 9.2755 4.8325 1.8771 14 6 10.4077 5.5635 1.8948 15 8 11.0966 5.6425 0.8948 16 6 10.8086 6.2624 3.1169 17 1 10.1505 6.2736 3.9731 18 6 12.0457 6.9163 3.1758 19 7 12.7890 7.0060 2.1048 20 14 12.6332 7.6603 4.7854 21 1 13.5118 6.6905 5.4873 22 1 13.3931 8.9054 4.5070 23 1 11.4616 7.9763 5.6414 24 7 7.4457 2.1751 1.4269 25 7 6.1944 1.8815 1.4782 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.7214 2.9427 -1.5344 32 1 3.0100 1.1856 -2.0156 33 1 3.5943 2.8648 1.9022 34 1 3.7207 3.7886 0.3859 35 1 6.0625 4.7895 0.1892 36 1 9.6502 3.4229 0.3700 37 1 8.7330 4.8575 -0.1487 38 1 8.7262 4.7699 2.6741 39 1 13.6456 7.4593 2.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905829210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:08 Heat of formation + Delta-G solvation = 72.081485 kcal Electronic energy + Delta-G solvation = -20259.920026 eV Core-core repulsion = 17012.294212 eV Total energy + Delta-G solvation = -3247.625814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.13913 -38.81388 -37.23019 -34.82459 -33.47046 -32.40262 -32.24989 -30.68411 -28.15717 -26.93504 -24.99856 -24.28743 -22.58579 -21.68201 -20.92994 -20.38496 -19.60308 -17.65678 -16.98138 -16.55337 -15.35849 -15.26740 -15.14540 -14.75049 -14.55812 -14.24765 -14.08601 -13.81221 -13.38127 -12.83782 -12.65339 -12.56394 -12.26203 -12.10054 -11.76730 -11.54851 -11.49902 -11.31043 -11.11847 -10.92866 -10.62755 -10.50847 -10.41276 -10.31771 -10.18759 -9.92722 -9.14661 -8.80616 -7.56437 -7.46560 -6.15360 -4.58903 1.66545 2.26274 2.67282 3.17713 3.21391 3.24747 3.28205 3.90559 4.15583 4.17884 4.36934 4.48040 4.56881 4.63479 4.69068 4.74579 4.86330 4.91343 5.02362 5.09807 5.19174 5.23760 5.33233 5.37253 5.55279 5.58983 5.62544 5.67115 5.73916 5.86581 5.90093 6.16139 6.47357 6.55296 6.62976 7.48224 7.96656 8.11625 8.37981 8.66302 9.06929 9.57174 10.63681 10.82036 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.049196 B = 0.002529 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.013276 B =11070.112220 C =11283.891809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.135 4.135 4 H 0.109 0.891 5 C -0.171 4.171 6 C -0.171 4.171 7 H 0.121 0.879 8 C 0.150 3.850 9 N -0.294 5.294 10 C -0.040 4.040 11 C -0.018 4.018 12 C 0.216 3.784 13 N -0.761 5.761 14 C 0.557 3.443 15 O -0.581 6.581 16 C -0.544 4.544 17 H 0.068 0.932 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.908 3.092 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 N -0.255 5.255 25 N -0.090 5.090 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.190 0.810 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.756 -8.556 -4.170 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.153 4.153 4 H 0.127 0.873 5 C -0.208 4.208 6 C -0.190 4.190 7 H 0.139 0.861 8 C 0.029 3.971 9 N -0.087 5.087 10 C -0.191 4.191 11 C -0.156 4.156 12 C 0.090 3.910 13 N -0.417 5.417 14 C 0.361 3.639 15 O -0.464 6.464 16 C -0.581 4.581 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.122 5.122 25 N -0.069 5.069 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.207 0.793 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.122 -9.839 -4.402 26.421 hybrid contribution -0.158 1.431 0.677 1.591 sum -24.280 -8.408 -3.725 25.963 Atomic orbital electron populations 1.21745 0.95237 1.01782 1.01926 1.21149 0.96087 0.93739 1.02441 1.22511 0.92020 0.98768 1.02026 0.87300 1.23314 1.03191 1.02803 0.91459 1.22652 0.96245 0.99795 1.00290 0.86085 1.21599 0.73650 0.99235 1.02654 1.47263 1.08697 1.12075 1.40692 1.23455 0.90092 0.97321 1.08192 1.22352 0.96142 0.93526 1.03607 1.19049 0.88144 0.93652 0.90174 1.46156 1.28449 1.55205 1.11935 1.18219 0.78091 0.78114 0.89485 1.90600 1.53477 1.66148 1.36160 1.20864 1.03671 1.34838 0.98752 0.91425 1.25701 0.96176 0.94412 0.96906 1.70028 1.09603 1.32114 1.27905 0.86361 0.79241 0.78684 0.82465 1.19786 1.20492 1.18947 1.75126 1.07481 1.13617 1.16019 1.78242 0.98128 1.12942 1.17637 0.92596 0.92600 0.92582 0.91676 0.91243 0.88377 0.88341 0.88025 0.87672 0.79274 0.91447 0.91520 0.78772 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.87 37.16 0.37 -0.34 16 2 C -0.10 -0.54 6.22 -26.73 -0.17 -0.71 16 3 C -0.13 -0.75 5.46 -90.62 -0.49 -1.25 16 4 H 0.11 0.49 8.07 -51.93 -0.42 0.08 16 5 C -0.17 -1.03 9.82 -26.73 -0.26 -1.29 16 6 C -0.17 -1.27 5.62 -90.62 -0.51 -1.78 16 7 H 0.12 1.17 7.86 -51.93 -0.41 0.77 16 8 C 0.15 1.14 6.74 -4.05 -0.03 1.11 16 9 N -0.29 -3.63 3.44 -61.27 -0.21 -3.84 16 10 C -0.04 -0.52 11.50 -17.05 -0.20 -0.72 16 11 C -0.02 -0.31 6.62 -82.77 -0.55 -0.86 16 12 C 0.22 4.38 6.23 -5.19 -0.03 4.35 16 13 N -0.76 -17.79 5.54 -62.90 -0.35 -18.13 16 14 C 0.56 16.17 7.74 -12.99 -0.10 16.07 16 15 O -0.58 -19.03 15.05 5.20 0.08 -18.95 16 16 C -0.54 -15.68 9.53 -35.63 -0.34 -16.02 16 17 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 18 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 19 N -0.77 -23.29 11.85 55.55 0.66 -22.63 16 20 Si 0.91 20.47 29.56 -169.99 -5.03 15.45 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 N -0.25 -4.74 12.41 33.29 0.41 -4.33 16 25 N -0.09 -1.44 12.73 60.35 0.77 -0.67 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.37 7.87 -51.93 -0.41 -0.03 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.49 8.03 -51.93 -0.42 0.08 16 32 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.52 7.80 -51.93 -0.41 0.12 16 35 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.38 8.19 8.44 -40.82 -0.34 7.84 16 39 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -36.61 340.06 -6.70 -43.30 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.75 Total: 3.74 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.40 Total: 0.95 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 1.28 Total: -49.61 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.08 Total: -18.95 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.61 -6.70 -43.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905829210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.385 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds