Wall clock time and date at job start Tue Mar 31 2020 00:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.09000 * 115.56577 * 29.30472 * 3 2 1 5 5 C 1.53002 * 117.49855 * 243.62021 * 3 2 1 6 6 C 1.53003 * 117.49946 * 174.99721 * 3 2 1 7 7 H 1.08998 * 117.49641 * 359.97438 * 6 3 2 8 8 C 1.52998 * 117.50145 * 214.97533 * 6 3 2 9 9 N 1.46493 * 109.47514 * 174.99809 * 8 6 3 10 10 C 1.35315 * 125.86985 * 125.00119 * 9 8 6 11 11 C 1.35350 * 106.17375 * 180.02562 * 10 9 8 12 12 C 1.50708 * 126.74605 * 180.02562 * 11 10 9 13 13 N 1.46492 * 109.47125 * 94.98102 * 12 11 10 14 14 C 1.34780 * 119.99895 * 180.02562 * 13 12 11 15 15 O 1.21691 * 119.99870 * 359.97438 * 14 13 12 16 16 C 1.46375 * 119.99984 * 179.97438 * 14 13 12 17 17 H 1.07998 * 119.99944 * 353.93773 * 16 14 13 18 18 C 1.40050 * 119.99800 * 173.93385 * 16 14 13 19 19 N 1.30673 * 120.00127 * 6.15278 * 18 16 14 20 20 Si 1.86800 * 120.00112 * 186.14768 * 18 16 14 21 21 H 1.48495 * 109.46952 * 94.98381 * 20 18 16 22 22 H 1.48494 * 109.47464 * 214.98968 * 20 18 16 23 23 H 1.48506 * 109.46871 * 334.98873 * 20 18 16 24 24 N 1.33772 * 106.49982 * 359.97438 * 11 10 9 25 25 N 1.28629 * 108.88340 * 0.02562 * 24 11 10 26 26 H 1.08995 * 109.47231 * 300.00730 * 1 2 3 27 27 H 1.09006 * 109.46402 * 60.00283 * 1 2 3 28 28 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47652 * 239.99918 * 2 1 3 30 30 H 1.09000 * 109.46947 * 119.99298 * 2 1 3 31 31 H 1.08997 * 117.50597 * 145.02214 * 5 3 2 32 32 H 1.09006 * 117.49883 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.46656 * 55.00326 * 8 6 3 34 34 H 1.08999 * 109.46989 * 295.00602 * 8 6 3 35 35 H 1.07998 * 126.91008 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.46431 * 214.97527 * 12 11 10 37 37 H 1.08997 * 109.46978 * 334.97272 * 12 11 10 38 38 H 0.97003 * 120.00681 * 359.97438 * 13 12 11 39 39 H 0.97000 * 119.99778 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4813 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6579 0.1184 7 1 4.1803 0.7719 0.1966 8 6 4.0301 2.8804 0.9032 9 7 5.4910 2.8513 1.0073 10 6 6.3330 3.8391 0.6250 11 6 7.5826 3.3960 0.8976 12 6 8.8740 4.1336 0.6539 13 7 9.2755 4.8325 1.8771 14 6 10.4077 5.5635 1.8948 15 8 11.0966 5.6425 0.8948 16 6 10.8086 6.2624 3.1169 17 1 10.1505 6.2736 3.9731 18 6 12.0457 6.9163 3.1758 19 7 12.7890 7.0060 2.1048 20 14 12.6332 7.6603 4.7854 21 1 13.5118 6.6905 5.4873 22 1 13.3931 8.9054 4.5070 23 1 11.4616 7.9763 5.6414 24 7 7.4457 2.1751 1.4269 25 7 6.1944 1.8815 1.4782 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.7214 2.9427 -1.5344 32 1 3.0100 1.1856 -2.0156 33 1 3.5943 2.8648 1.9022 34 1 3.7207 3.7886 0.3859 35 1 6.0625 4.7895 0.1892 36 1 9.6502 3.4229 0.3700 37 1 8.7330 4.8575 -0.1487 38 1 8.7262 4.7699 2.6741 39 1 13.6456 7.4593 2.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905829210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:08 Heat of formation + Delta-G solvation = 45.753947 kcal Electronic energy + Delta-G solvation = -20261.061673 eV Core-core repulsion = 17012.294212 eV Total energy + Delta-G solvation = -3248.767461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.29771 -39.44422 -39.24882 -36.06207 -35.05645 -34.43478 -32.92182 -32.19557 -29.19643 -28.63529 -26.78318 -24.70783 -23.48526 -22.87507 -21.79030 -21.40508 -21.16725 -19.37386 -18.24565 -17.59027 -17.38683 -16.27094 -16.08172 -15.97730 -15.70477 -15.55283 -15.17097 -14.94988 -14.59096 -14.39335 -13.87554 -13.43914 -13.23930 -13.12794 -12.98790 -12.87757 -12.73796 -12.60488 -12.51344 -12.17964 -11.98836 -11.92795 -11.83352 -11.29040 -10.91704 -10.81297 -10.78213 -10.42533 -9.79836 -9.49930 -8.28549 -6.83563 0.58416 1.32362 1.40443 1.42276 1.43391 1.59039 2.27438 2.48394 2.71619 3.17776 3.34795 3.37485 3.62433 3.72148 3.86517 3.88489 4.03934 4.12336 4.20527 4.28844 4.33369 4.49489 4.52682 4.64742 4.74688 4.81948 4.93128 4.97137 5.04647 5.13981 5.17581 5.20605 5.28445 5.34046 5.48754 5.65592 5.87976 6.17105 6.27075 6.88178 7.46228 7.51954 8.48665 8.67897 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.049196 B = 0.002529 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.013276 B =11070.112220 C =11283.891809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.120 4.120 4 H 0.128 0.872 5 C -0.167 4.167 6 C -0.186 4.186 7 H 0.092 0.908 8 C 0.141 3.859 9 N -0.278 5.278 10 C -0.010 4.010 11 C -0.047 4.047 12 C 0.225 3.775 13 N -0.748 5.748 14 C 0.541 3.459 15 O -0.630 6.630 16 C -0.573 4.573 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.820 5.820 20 Si 0.999 3.001 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.249 1.249 24 N -0.298 5.298 25 N -0.106 5.106 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.233 0.767 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.300 -7.189 -3.048 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.139 4.139 4 H 0.146 0.854 5 C -0.204 4.204 6 C -0.205 4.205 7 H 0.110 0.890 8 C 0.022 3.978 9 N -0.071 5.071 10 C -0.162 4.162 11 C -0.186 4.186 12 C 0.098 3.902 13 N -0.403 5.403 14 C 0.346 3.654 15 O -0.517 6.517 16 C -0.609 4.609 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.449 5.449 20 Si 0.818 3.182 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.172 1.172 24 N -0.165 5.165 25 N -0.085 5.085 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.161 0.839 35 H 0.249 0.751 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.749 -8.523 -3.266 28.263 hybrid contribution 0.484 0.920 0.251 1.069 sum -26.265 -7.603 -3.015 27.509 Atomic orbital electron populations 1.21725 0.94301 1.02034 1.02363 1.21178 0.96892 0.93937 1.01821 1.22587 0.90849 0.98982 1.01471 0.85385 1.23406 1.02354 1.03716 0.90881 1.22503 0.97176 0.98913 1.01914 0.89022 1.22137 0.70555 1.00895 1.04196 1.47655 1.10337 1.10728 1.38392 1.23903 0.88541 0.98168 1.05583 1.21934 0.96262 0.93855 1.06537 1.18891 0.89198 0.93144 0.88921 1.45829 1.27031 1.54007 1.13447 1.18580 0.78999 0.78652 0.89216 1.90553 1.55412 1.68070 1.37673 1.21391 1.04867 1.35407 0.99261 0.89652 1.26970 0.95863 0.94351 1.01466 1.70183 1.10392 1.33174 1.31157 0.84996 0.79025 0.77743 0.76440 1.19070 1.19442 1.17169 1.75062 1.09113 1.14712 1.17589 1.78159 0.97558 1.14182 1.18623 0.92046 0.92198 0.92533 0.92279 0.92029 0.86551 0.89022 0.86523 0.83893 0.75107 0.94277 0.90760 0.77582 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.87 71.98 0.71 -0.41 16 2 C -0.10 -1.01 6.22 30.59 0.19 -0.82 16 3 C -0.12 -1.05 5.46 -10.79 -0.06 -1.11 16 4 H 0.13 0.67 8.07 -2.39 -0.02 0.65 16 5 C -0.17 -1.60 9.82 30.60 0.30 -1.30 16 6 C -0.19 -2.41 5.62 -10.79 -0.06 -2.47 16 7 H 0.09 1.78 7.86 -2.39 -0.02 1.76 16 8 C 0.14 1.66 6.74 86.38 0.58 2.24 16 9 N -0.28 -6.25 3.44 -347.75 -1.20 -7.45 16 10 C -0.01 -0.23 11.50 83.49 0.96 0.73 16 11 C -0.05 -1.61 6.62 41.60 0.28 -1.34 16 12 C 0.22 9.32 6.23 85.64 0.53 9.85 16 13 N -0.75 -35.56 5.54 -471.14 -2.61 -38.17 16 14 C 0.54 32.24 7.74 86.36 0.67 32.90 16 15 O -0.63 -42.88 15.05 -4.32 -0.06 -42.94 16 16 C -0.57 -33.20 9.53 24.83 0.24 -32.97 16 17 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 18 C 0.03 1.63 5.49 85.30 0.47 2.10 16 19 N -0.82 -50.74 11.85 21.84 0.26 -50.48 16 20 Si 1.00 41.62 29.56 68.60 2.03 43.65 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 24 N -0.30 -11.23 12.41 -48.59 -0.60 -11.83 16 25 N -0.11 -3.34 12.73 37.02 0.47 -2.87 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.12 0.71 8.03 -2.39 -0.02 0.69 16 32 H 0.09 1.01 8.03 -2.38 -0.02 0.99 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.14 0.66 7.80 -2.39 -0.02 0.64 16 35 H 0.23 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.39 16.84 8.44 -92.71 -0.78 16.06 16 39 H 0.28 15.36 8.29 -92.71 -0.77 14.59 16 Total: -1.00 -83.41 340.06 3.36 -80.05 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.27 Total: 22.64 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.81 Total: 7.41 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -3.68 Total: -110.81 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.06 Total: -42.94 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -83.41 3.36 -80.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905829210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.804 kcal (2) G-P(sol) polarization free energy of solvation -83.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds