Wall clock time and date at job start Tue Mar 31 2020 00:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47337 * 2 1 4 4 N 1.33317 * 126.10501 * 269.97553 * 3 2 1 5 5 C 1.30852 * 109.68556 * 180.02562 * 4 3 2 6 6 N 1.34498 * 109.16165 * 359.72687 * 5 4 3 7 7 H 0.97004 * 126.46871 * 180.29863 * 6 5 4 8 8 C 1.36661 * 126.10657 * 89.99572 * 3 2 1 9 9 C 1.46757 * 126.84693 * 359.97438 * 8 3 2 10 10 O 1.21676 * 120.00313 * 252.49342 * 9 8 3 11 11 N 1.34784 * 120.00004 * 72.49714 * 9 8 3 12 12 C 1.46960 * 120.59228 * 185.06556 * 11 9 8 13 13 C 1.53374 * 108.63232 * 235.24637 * 12 11 9 14 14 N 1.46967 * 108.63848 * 310.57532 * 13 12 11 15 15 C 1.36934 * 120.59591 * 235.20506 * 14 13 12 16 16 H 1.07997 * 120.00194 * 32.35997 * 15 14 13 17 17 C 1.38811 * 119.99699 * 212.62929 * 15 14 13 18 18 N 1.31618 * 120.00203 * 10.11743 * 17 15 14 19 19 Si 1.86803 * 119.99799 * 190.11543 * 17 15 14 20 20 H 1.48499 * 109.47071 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46944 * 120.00387 * 19 17 15 22 22 H 1.48491 * 109.47048 * 240.00072 * 19 17 15 23 23 C 1.46970 * 118.80454 * 55.47682 * 14 13 12 24 24 C 1.46961 * 120.59170 * 5.08788 * 11 9 8 25 25 H 1.08999 * 109.47345 * 60.00040 * 1 2 3 26 26 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47354 * 300.00149 * 1 2 3 28 28 H 1.08999 * 109.47354 * 239.99851 * 2 1 3 29 29 H 1.09008 * 109.47168 * 119.99896 * 2 1 3 30 30 H 1.08003 * 125.42045 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.61006 * 115.50527 * 12 11 9 32 32 H 1.09001 * 109.61189 * 354.98859 * 12 11 9 33 33 H 1.09001 * 109.60714 * 190.83281 * 13 12 11 34 34 H 1.08997 * 109.60965 * 70.32531 * 13 12 11 35 35 H 0.96997 * 120.00351 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.60922 * 64.27395 * 23 14 13 37 37 H 1.09006 * 109.60386 * 184.77867 * 23 14 13 38 38 H 1.09008 * 109.60637 * 244.49467 * 24 11 9 39 39 H 1.09000 * 109.61286 * 5.00315 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2946 2.1613 -1.0771 5 6 2.7134 3.3446 -0.7072 6 7 2.7290 3.4073 0.6362 7 1 2.9930 4.1697 1.1747 8 6 2.3007 2.1801 1.1041 9 6 2.1567 1.7747 2.5072 10 8 1.2508 2.2277 3.1815 11 7 3.0280 0.9007 3.0490 12 6 2.8328 0.4007 4.4171 13 6 4.1026 0.6854 5.2287 14 7 5.2652 0.2156 4.4621 15 6 6.1509 -0.6717 5.0129 16 1 5.8050 -1.4122 5.7188 17 6 7.4943 -0.6158 4.6680 18 7 7.9536 0.4035 3.9735 19 14 8.6503 -1.9873 5.1898 20 1 7.8921 -3.0095 5.9549 21 1 9.2493 -2.6151 3.9846 22 1 9.7284 -1.4278 6.0440 23 6 5.4634 0.7199 3.0960 24 6 4.1905 0.4310 2.2823 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.9973 4.1449 -1.3746 31 1 2.6482 -0.6732 4.3912 32 1 1.9843 0.9093 4.8749 33 1 4.0544 0.1568 6.1807 34 1 4.1905 1.7571 5.4066 35 1 8.8924 0.4427 3.7328 36 1 5.6460 1.7941 3.1255 37 1 6.3141 0.2141 2.6392 38 1 4.1026 -0.6409 2.1045 39 1 4.2387 0.9595 1.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906756536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:28 Heat of formation + Delta-G solvation = 46.456537 kcal Electronic energy + Delta-G solvation = -22436.604749 eV Core-core repulsion = 19187.867754 eV Total energy + Delta-G solvation = -3248.736995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.17978 -39.32729 -36.80880 -34.34828 -33.86472 -32.08103 -31.36046 -30.27694 -29.01779 -26.92983 -24.39592 -23.50992 -23.07539 -22.25112 -21.19077 -19.90718 -18.94526 -17.99333 -16.80079 -16.12359 -15.66417 -15.23048 -14.92795 -14.71546 -14.26909 -13.89468 -13.71160 -13.55341 -13.42402 -13.34739 -13.25209 -12.42613 -12.33348 -11.72998 -11.45954 -11.33758 -11.01333 -10.92921 -10.77527 -10.57215 -10.40292 -10.25361 -10.11324 -9.98111 -9.89400 -9.61631 -8.66991 -8.39289 -8.33399 -6.73107 -5.91457 -3.42484 1.74060 2.45437 2.97623 3.17730 3.29614 3.37845 3.39496 3.58199 4.38380 4.43356 4.76495 5.03430 5.05666 5.25154 5.29046 5.44886 5.50218 5.64820 5.73649 5.78892 5.84364 5.90303 6.00915 6.08656 6.12202 6.17055 6.26983 6.28833 6.35992 6.59165 6.70625 6.83448 7.12904 7.25928 7.40751 7.66158 7.74427 7.95525 8.32578 8.34523 9.06801 9.66941 10.25527 11.16047 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.005005 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.999101 B = 5592.529043 C = 5831.370620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.056 3.944 4 N -0.491 5.491 5 C 0.199 3.801 6 N -0.543 5.543 7 H 0.425 0.575 8 C -0.056 4.056 9 C 0.585 3.415 10 O -0.549 6.549 11 N -0.578 5.578 12 C 0.095 3.905 13 C 0.132 3.868 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.905 5.905 19 Si 0.907 3.093 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.161 3.839 24 C 0.081 3.919 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.213 0.787 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.255 0.745 36 H 0.021 0.979 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 2.979 -7.556 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.076 4.076 4 N -0.211 5.211 5 C -0.085 4.085 6 N -0.146 5.146 7 H 0.263 0.737 8 C -0.174 4.174 9 C 0.371 3.629 10 O -0.427 6.427 11 N -0.310 5.310 12 C -0.029 4.029 13 C 0.005 3.995 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.550 5.550 19 Si 0.736 3.264 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.216 1.216 23 C 0.035 3.965 24 C -0.043 4.043 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.986 2.939 -8.028 13.145 hybrid contribution 1.098 0.247 1.169 1.623 sum -8.888 3.185 -6.859 11.669 Atomic orbital electron populations 1.21699 0.94586 1.01646 1.02175 1.19920 0.95978 0.89219 1.03267 1.20806 1.03078 0.96956 0.86805 1.69971 1.18028 1.02682 1.30391 1.24977 1.03523 0.98116 0.81882 1.43177 1.50000 1.12891 1.08576 0.73672 1.20698 1.13233 0.88200 0.95280 1.16990 0.82158 0.79831 0.83961 1.90787 1.33967 1.56200 1.61753 1.48004 1.24398 1.43087 1.15473 1.22325 1.00393 0.98821 0.81360 1.21315 0.86760 0.97277 0.94197 1.43976 1.25951 1.51123 1.10314 1.19246 0.87357 1.07717 1.24255 0.91455 1.25222 0.96900 0.97160 0.99981 1.69943 1.14085 1.29016 1.41909 0.86153 0.80794 0.81378 0.78036 1.20107 1.21437 1.21572 1.21269 0.93166 0.97275 0.84819 1.22833 0.87200 0.99342 0.94916 0.92491 0.92220 0.92677 0.90036 0.90562 0.77093 0.91430 0.89809 0.91257 0.95907 0.93446 0.96137 0.87946 0.91483 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 37.15 0.37 -1.37 16 2 C -0.05 -0.61 6.29 -27.89 -0.18 -0.78 16 3 C 0.06 0.85 5.91 -82.52 -0.49 0.36 16 4 N -0.49 -7.11 11.20 -10.64 -0.12 -7.23 16 5 C 0.20 2.26 13.01 -90.58 -1.18 1.09 16 6 N -0.54 -6.77 6.19 -10.79 -0.07 -6.83 16 7 H 0.42 4.25 8.96 -40.82 -0.37 3.88 16 8 C -0.06 -0.88 5.12 -82.15 -0.42 -1.30 16 9 C 0.59 10.47 7.18 -12.81 -0.09 10.37 16 10 O -0.55 -11.15 16.52 5.21 0.09 -11.07 16 11 N -0.58 -10.37 2.95 -173.73 -0.51 -10.88 16 12 C 0.09 1.69 6.60 -3.60 -0.02 1.66 16 13 C 0.13 2.67 6.67 -3.59 -0.02 2.65 16 14 N -0.59 -14.06 2.95 -171.76 -0.51 -14.56 16 15 C -0.26 -6.66 9.57 -15.06 -0.14 -6.80 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 18 N -0.91 -25.09 11.06 55.49 0.61 -24.48 16 19 Si 0.91 20.79 29.57 -169.99 -5.03 15.76 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.16 3.63 5.48 -3.37 -0.02 3.61 16 24 C 0.08 1.48 6.23 -3.37 -0.02 1.46 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.05 7.71 -51.92 -0.40 0.65 16 30 H 0.21 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.45 6.99 -51.93 -0.36 1.08 16 33 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 38 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.07 1.22 6.03 -51.93 -0.31 0.91 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -31.78 321.80 -8.51 -40.28 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.52 Total: 3.13 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -2.31 Total: 11.02 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.59 Total: -63.98 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.78 -8.51 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906756536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.741 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds