Wall clock time and date at job start Tue Mar 31 2020 00:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47337 * 2 1 4 4 N 1.33317 * 126.10501 * 269.97553 * 3 2 1 5 5 C 1.30852 * 109.68556 * 180.02562 * 4 3 2 6 6 N 1.34498 * 109.16165 * 359.72687 * 5 4 3 7 7 H 0.97004 * 126.46871 * 180.29863 * 6 5 4 8 8 C 1.36661 * 126.10657 * 89.99572 * 3 2 1 9 9 C 1.46757 * 126.84693 * 359.97438 * 8 3 2 10 10 O 1.21676 * 120.00313 * 252.49342 * 9 8 3 11 11 N 1.34784 * 120.00004 * 72.49714 * 9 8 3 12 12 C 1.46960 * 120.59228 * 185.06556 * 11 9 8 13 13 C 1.53374 * 108.63232 * 235.24637 * 12 11 9 14 14 N 1.46967 * 108.63848 * 310.57532 * 13 12 11 15 15 C 1.36934 * 120.59591 * 235.20506 * 14 13 12 16 16 H 1.07997 * 120.00194 * 32.35997 * 15 14 13 17 17 C 1.38811 * 119.99699 * 212.62929 * 15 14 13 18 18 N 1.31618 * 120.00203 * 10.11743 * 17 15 14 19 19 Si 1.86803 * 119.99799 * 190.11543 * 17 15 14 20 20 H 1.48499 * 109.47071 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46944 * 120.00387 * 19 17 15 22 22 H 1.48491 * 109.47048 * 240.00072 * 19 17 15 23 23 C 1.46970 * 118.80454 * 55.47682 * 14 13 12 24 24 C 1.46961 * 120.59170 * 5.08788 * 11 9 8 25 25 H 1.08999 * 109.47345 * 60.00040 * 1 2 3 26 26 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47354 * 300.00149 * 1 2 3 28 28 H 1.08999 * 109.47354 * 239.99851 * 2 1 3 29 29 H 1.09008 * 109.47168 * 119.99896 * 2 1 3 30 30 H 1.08003 * 125.42045 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.61006 * 115.50527 * 12 11 9 32 32 H 1.09001 * 109.61189 * 354.98859 * 12 11 9 33 33 H 1.09001 * 109.60714 * 190.83281 * 13 12 11 34 34 H 1.08997 * 109.60965 * 70.32531 * 13 12 11 35 35 H 0.96997 * 120.00351 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.60922 * 64.27395 * 23 14 13 37 37 H 1.09006 * 109.60386 * 184.77867 * 23 14 13 38 38 H 1.09008 * 109.60637 * 244.49467 * 24 11 9 39 39 H 1.09000 * 109.61286 * 5.00315 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2946 2.1613 -1.0771 5 6 2.7134 3.3446 -0.7072 6 7 2.7290 3.4073 0.6362 7 1 2.9930 4.1697 1.1747 8 6 2.3007 2.1801 1.1041 9 6 2.1567 1.7747 2.5072 10 8 1.2508 2.2277 3.1815 11 7 3.0280 0.9007 3.0490 12 6 2.8328 0.4007 4.4171 13 6 4.1026 0.6854 5.2287 14 7 5.2652 0.2156 4.4621 15 6 6.1509 -0.6717 5.0129 16 1 5.8050 -1.4122 5.7188 17 6 7.4943 -0.6158 4.6680 18 7 7.9536 0.4035 3.9735 19 14 8.6503 -1.9873 5.1898 20 1 7.8921 -3.0095 5.9549 21 1 9.2493 -2.6151 3.9846 22 1 9.7284 -1.4278 6.0440 23 6 5.4634 0.7199 3.0960 24 6 4.1905 0.4310 2.2823 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.9973 4.1449 -1.3746 31 1 2.6482 -0.6732 4.3912 32 1 1.9843 0.9093 4.8749 33 1 4.0544 0.1568 6.1807 34 1 4.1905 1.7571 5.4066 35 1 8.8924 0.4427 3.7328 36 1 5.6460 1.7941 3.1255 37 1 6.3141 0.2141 2.6392 38 1 4.1026 -0.6409 2.1045 39 1 4.2387 0.9595 1.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906756536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:28 Heat of formation + Delta-G solvation = 26.565571 kcal Electronic energy + Delta-G solvation = -22437.467286 eV Core-core repulsion = 19187.867754 eV Total energy + Delta-G solvation = -3249.599532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.23934 -40.77973 -38.45437 -35.73166 -35.22856 -33.46394 -32.82902 -31.93546 -30.22364 -28.59339 -25.90797 -24.86912 -24.56696 -23.51483 -22.48149 -21.31387 -20.20424 -19.41663 -18.28646 -17.74892 -16.98130 -16.74823 -16.41718 -15.93344 -15.53798 -15.47931 -15.17730 -15.10993 -14.89348 -14.72500 -14.45960 -13.94073 -13.40363 -13.33101 -13.15952 -12.75428 -12.52042 -12.42192 -12.23540 -12.08621 -12.00260 -11.97795 -11.73874 -11.52642 -11.00636 -10.91393 -10.63416 -9.94581 -9.45335 -8.64376 -7.90148 -5.44741 0.64241 1.18678 1.48087 1.50699 1.60311 1.82931 2.03286 2.38020 2.50392 3.27106 3.42887 3.56255 3.58055 3.99424 4.17747 4.19370 4.22113 4.34155 4.44799 4.48494 4.51933 4.61377 4.68352 4.70191 4.77952 4.87256 5.02386 5.05347 5.16270 5.19053 5.28478 5.44470 5.54046 5.57420 5.62985 6.27470 6.36697 6.37001 6.88582 6.97322 7.09968 7.75064 8.30319 9.15080 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.005005 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.999101 B = 5592.529043 C = 5831.370620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C 0.057 3.943 4 N -0.521 5.521 5 C 0.224 3.776 6 N -0.540 5.540 7 H 0.435 0.565 8 C -0.092 4.092 9 C 0.593 3.407 10 O -0.576 6.576 11 N -0.581 5.581 12 C 0.104 3.896 13 C 0.132 3.868 14 N -0.607 5.607 15 C -0.264 4.264 16 H 0.072 0.928 17 C -0.044 4.044 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.294 1.294 23 C 0.170 3.830 24 C 0.104 3.896 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.009 0.991 35 H 0.252 0.748 36 H -0.004 1.004 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.259 2.650 -8.525 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 C -0.076 4.076 4 N -0.241 5.241 5 C -0.060 4.060 6 N -0.144 5.144 7 H 0.275 0.725 8 C -0.210 4.210 9 C 0.379 3.621 10 O -0.456 6.456 11 N -0.312 5.312 12 C -0.020 4.020 13 C 0.006 3.994 14 N -0.331 5.331 15 C -0.394 4.394 16 H 0.089 0.911 17 C -0.239 4.239 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.222 1.222 23 C 0.044 3.956 24 C -0.020 4.020 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.277 0.723 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.014 0.986 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.655 2.613 -8.980 14.177 hybrid contribution 1.271 0.437 1.441 1.970 sum -9.384 3.050 -7.540 12.418 Atomic orbital electron populations 1.21632 0.93717 1.02718 1.01259 1.20004 0.96707 0.88635 1.03388 1.21090 1.02130 0.97526 0.86821 1.70018 1.19763 1.03979 1.30354 1.25986 1.00074 0.98123 0.81773 1.43216 1.49725 1.12332 1.09158 0.72464 1.20424 1.16418 0.90010 0.94119 1.17206 0.81318 0.78809 0.84719 1.90762 1.35009 1.56939 1.62919 1.48004 1.24377 1.43299 1.15498 1.22192 0.98969 0.99699 0.81109 1.21387 0.86703 0.96425 0.94892 1.44214 1.26536 1.51134 1.11176 1.19562 0.87911 1.07998 1.23894 0.91085 1.25931 0.98340 0.99195 1.00462 1.70097 1.14039 1.30767 1.43299 0.85168 0.78616 0.78998 0.77416 1.18910 1.21528 1.22156 1.21034 0.94385 0.95228 0.84991 1.22468 0.85199 0.99853 0.94434 0.92381 0.90201 0.94473 0.89037 0.91223 0.72322 0.90140 0.89075 0.90303 0.97272 0.93898 0.98600 0.90618 0.90782 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.89 71.98 0.71 -2.38 16 2 C -0.05 -1.24 6.29 29.85 0.19 -1.05 16 3 C 0.06 1.64 5.91 41.97 0.25 1.89 16 4 N -0.52 -13.89 11.20 -187.59 -2.10 -15.99 16 5 C 0.22 4.43 13.01 180.33 2.35 6.78 16 6 N -0.54 -12.42 6.19 -188.05 -1.16 -13.58 16 7 H 0.43 7.95 8.96 -92.71 -0.83 7.12 16 8 C -0.09 -2.77 5.12 40.01 0.20 -2.57 16 9 C 0.59 20.80 7.18 86.47 0.62 21.42 16 10 O -0.58 -23.18 16.52 -4.27 -0.07 -23.25 16 11 N -0.58 -20.45 2.95 -821.78 -2.42 -22.87 16 12 C 0.10 3.60 6.60 86.42 0.57 4.17 16 13 C 0.13 5.35 6.67 86.42 0.58 5.92 16 14 N -0.61 -29.02 2.95 -697.33 -2.06 -31.08 16 15 C -0.26 -13.69 9.57 84.03 0.80 -12.89 16 16 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 17 C -0.04 -2.31 5.06 84.86 0.43 -1.88 16 18 N -0.94 -52.82 11.06 21.65 0.24 -52.58 16 19 Si 0.97 42.78 29.57 68.60 2.03 44.81 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 C 0.17 7.76 5.48 86.56 0.47 8.24 16 24 C 0.10 3.76 6.23 86.56 0.54 4.29 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.83 7.71 -2.38 -0.02 1.81 16 30 H 0.26 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 32 H 0.09 3.06 6.99 -2.39 -0.02 3.05 16 33 H 0.08 2.99 7.93 -2.39 -0.02 2.97 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.08 3.88 6.07 -2.38 -0.01 3.86 16 38 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.08 2.81 6.03 -2.39 -0.01 2.79 16 Total: -1.00 -68.39 321.80 2.40 -65.99 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.23 Total: 16.61 kcal Atomic # 6 Polarization: 24.23 SS G_CDS: 7.71 Total: 31.94 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -7.50 Total: -136.10 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -68.39 2.40 -65.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906756536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.555 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds