Wall clock time and date at job start Tue Mar 31 2020 01:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21587 * 119.99885 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99762 * 179.97438 * 14 13 3 17 17 C 1.39502 * 119.99614 * 179.97438 * 16 14 13 18 18 C 1.36095 * 126.21911 * 0.03231 * 17 16 14 19 19 C 1.39769 * 107.82932 * 179.97438 * 18 17 16 20 20 N 1.30845 * 108.32035 * 359.97438 * 19 18 17 21 21 N 1.35252 * 126.21387 * 179.71527 * 17 16 14 22 22 C 1.46503 * 126.04220 * 0.02948 * 21 17 16 23 23 C 1.53000 * 117.49798 * 188.61820 * 22 21 17 24 24 C 1.53000 * 60.00012 * 252.51002 * 23 22 21 25 25 H 1.08999 * 109.46999 * 59.99621 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00037 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 0.97000 * 120.00112 * 0.02562 * 16 14 13 33 33 H 1.08002 * 126.08702 * 359.93881 * 18 17 16 34 34 H 1.08001 * 125.83723 * 179.97438 * 19 18 17 35 35 H 1.08994 * 115.55203 * 334.32606 * 22 21 17 36 36 H 1.09002 * 117.50142 * 0.02562 * 23 22 21 37 37 H 1.08998 * 117.49645 * 145.01597 * 23 22 21 38 38 H 1.08992 * 117.49705 * 252.50650 * 24 23 22 39 39 H 1.09005 * 117.51133 * 107.48430 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3363 2.6301 0.4639 16 7 0.1074 3.2564 2.5483 17 6 -1.1509 3.8432 2.6839 18 6 -2.1250 3.8856 1.7344 19 6 -3.2216 4.5618 2.2763 20 7 -2.9241 4.9130 3.5011 21 7 -1.6266 4.4682 3.7850 22 6 -0.9104 4.6503 5.0499 23 6 -1.7010 5.2071 6.2356 24 6 -0.6686 6.0845 5.5248 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 0.7353 3.2790 3.2873 33 1 -2.0617 3.4710 0.7392 34 1 -4.1550 4.7605 1.7705 35 1 -0.1366 3.9126 5.2625 36 1 -2.7541 5.4376 6.0746 37 1 -1.4475 4.8356 7.2285 38 1 0.2640 6.2903 6.0501 39 1 -1.0422 6.8926 4.8959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934526431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:13 Heat of formation + Delta-G solvation = 62.420659 kcal Electronic energy + Delta-G solvation = -21775.553376 eV Core-core repulsion = 18527.508637 eV Total energy + Delta-G solvation = -3248.044739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53365 -40.95986 -37.97229 -37.34662 -35.80127 -34.41062 -33.08607 -31.87223 -30.03874 -29.04084 -24.87985 -24.45952 -23.62196 -23.34326 -21.77875 -21.39679 -21.07135 -19.75120 -19.16795 -18.18999 -17.31060 -16.82675 -16.39381 -16.22792 -15.92080 -15.63339 -15.22356 -14.76286 -14.68234 -14.26417 -13.98242 -13.76421 -13.74251 -13.69897 -12.91377 -12.59483 -12.50867 -12.39578 -12.14172 -12.03162 -11.85656 -11.80034 -11.59342 -11.49310 -11.20848 -10.96557 -10.82254 -9.87908 -9.69320 -9.01196 -8.38043 -6.43999 0.76934 0.95168 1.32457 1.37517 1.47539 1.84070 1.88232 2.28883 2.30359 2.74299 2.96130 3.30364 3.43879 3.72550 3.89516 4.18562 4.26538 4.35162 4.45283 4.53515 4.59800 4.69166 4.73819 4.85052 4.95941 5.00957 5.14758 5.17233 5.20058 5.26134 5.29701 5.43238 5.58993 5.73365 5.78060 5.89766 6.09353 6.26958 6.62244 6.73300 7.10557 7.23428 7.55958 8.76574 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.004397 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.746149 B = 6366.167484 C = 6748.320029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.261 3.739 4 H 0.033 0.967 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.037 3.963 8 N -0.928 5.928 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.251 1.251 13 N -0.707 5.707 14 C 0.703 3.297 15 O -0.593 6.593 16 N -0.651 5.651 17 C 0.331 3.669 18 C -0.313 4.313 19 C 0.061 3.939 20 N -0.315 5.315 21 N -0.361 5.361 22 C 0.047 3.953 23 C -0.148 4.148 24 C -0.170 4.170 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.270 0.730 31 H 0.404 0.596 32 H 0.420 0.580 33 H 0.155 0.845 34 H 0.212 0.788 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 5.201 14.344 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.157 3.843 4 H 0.051 0.949 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.164 4.164 8 N -0.567 5.567 9 Si 0.747 3.253 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.175 1.175 13 N -0.360 5.360 14 C 0.402 3.598 15 O -0.470 6.470 16 N -0.302 5.302 17 C 0.109 3.891 18 C -0.345 4.345 19 C -0.124 4.124 20 N -0.137 5.137 21 N -0.148 5.148 22 C -0.056 4.056 23 C -0.186 4.186 24 C -0.209 4.209 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.258 0.742 33 H 0.172 0.828 34 H 0.229 0.771 35 H 0.179 0.821 36 H 0.113 0.887 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.090 5.707 14.489 20.343 hybrid contribution 0.920 -0.203 -1.120 1.463 sum -12.170 5.504 13.369 18.898 Atomic orbital electron populations 1.21751 0.95864 1.00132 1.01204 1.22007 0.94911 0.97924 1.01422 1.18849 0.93121 0.89999 0.82349 0.94896 1.21185 0.90157 1.50382 0.94628 0.92278 1.25548 0.95659 0.93871 1.01316 1.69973 1.11239 1.50174 1.25288 0.86117 0.80172 0.79241 0.79740 1.20234 1.20559 1.17527 1.45525 1.13324 1.58620 1.18555 1.15853 0.83273 0.78630 0.81997 1.90832 1.51428 1.64746 1.40043 1.41757 1.13879 1.58027 1.16585 1.17712 0.86666 0.95427 0.89325 1.21661 0.94498 1.15576 1.02773 1.24158 1.00218 0.96231 0.91783 1.77293 0.93523 1.24927 1.17963 1.48107 1.11622 1.45302 1.09776 1.22255 1.00413 1.00591 0.82294 1.23320 0.98272 1.01228 0.95763 1.23507 1.02498 0.92033 1.02812 0.94569 0.93432 0.92704 0.91854 0.92865 0.92040 0.76039 0.74229 0.82778 0.77101 0.82100 0.88694 0.84641 0.84749 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 8.53 71.98 0.61 -4.31 16 2 C -0.12 -4.98 5.59 30.59 0.17 -4.81 16 3 C 0.26 11.55 1.89 44.24 0.08 11.64 16 4 H 0.03 1.62 4.73 -2.39 -0.01 1.61 16 5 C -0.53 -27.02 9.05 25.60 0.23 -26.79 16 6 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 7 C 0.04 2.01 5.47 84.65 0.46 2.47 16 8 N -0.93 -53.87 13.96 21.45 0.30 -53.57 16 9 Si 0.92 43.42 26.99 68.60 1.85 45.27 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.25 -11.48 6.82 99.48 0.68 -10.80 16 13 N -0.71 -25.75 5.03 -461.41 -2.32 -28.08 16 14 C 0.70 25.16 7.13 179.05 1.28 26.43 16 15 O -0.59 -25.02 10.60 -3.99 -0.04 -25.06 16 16 N -0.65 -18.16 5.42 -322.31 -1.75 -19.90 16 17 C 0.33 9.96 7.66 131.31 1.01 10.97 16 18 C -0.31 -10.22 9.65 22.14 0.21 -10.01 16 19 C 0.06 1.67 12.01 85.21 1.02 2.69 16 20 N -0.31 -8.82 11.98 -57.09 -0.68 -9.50 16 21 N -0.36 -9.38 3.95 -324.45 -1.28 -10.66 16 22 C 0.05 0.81 6.65 44.99 0.30 1.11 16 23 C -0.15 -2.06 10.18 30.59 0.31 -1.75 16 24 C -0.17 -2.45 10.46 30.59 0.32 -2.13 16 25 H 0.04 1.44 7.88 -2.39 -0.02 1.43 16 26 H 0.05 1.78 5.63 -2.38 -0.01 1.77 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.40 12.48 8.61 -92.71 -0.80 11.68 16 32 H 0.42 8.38 8.09 -92.71 -0.75 7.63 16 33 H 0.15 5.76 5.82 -2.91 -0.02 5.74 16 34 H 0.21 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.16 1.90 7.67 -2.39 -0.02 1.88 16 36 H 0.09 1.69 7.83 -2.39 -0.02 1.67 16 37 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -68.05 322.78 1.60 -66.45 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.49 Total: 29.54 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.01 Total: 5.52 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.73 Total: -121.71 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.04 Total: -25.06 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.85 Total: 45.27 kcal Total: -68.05 1.60 -66.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934526431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.866 kcal (2) G-P(sol) polarization free energy of solvation -68.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds