Wall clock time and date at job start Tue Mar 31 2020 01:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09002 * 109.46907 * 54.42618 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.08005 * 119.99629 * 114.20010 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31516 * 119.99377 * 159.34627 * 7 5 3 9 9 Si 1.86791 * 120.00253 * 339.34456 * 7 5 3 10 10 H 1.48498 * 109.47412 * 269.99915 * 9 7 5 11 11 H 1.48495 * 109.47035 * 30.00059 * 9 7 5 12 12 H 1.48500 * 109.47245 * 150.00182 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34782 * 119.99854 * 84.99547 * 13 3 2 15 15 O 1.21586 * 120.00225 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99680 * 179.97438 * 14 13 3 17 17 C 1.39505 * 119.99984 * 180.02562 * 16 14 13 18 18 C 1.36108 * 126.21239 * 0.02931 * 17 16 14 19 19 C 1.39765 * 107.82421 * 179.97438 * 18 17 16 20 20 N 1.30845 * 108.32029 * 359.97438 * 19 18 17 21 21 N 1.35243 * 126.21570 * 179.71311 * 17 16 14 22 22 C 1.46499 * 126.04766 * 0.02562 * 21 17 16 23 23 C 1.52992 * 117.50391 * 188.62255 * 22 21 17 24 24 C 1.52999 * 60.00269 * 252.51290 * 23 22 21 25 25 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 26 26 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 28 28 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 29 29 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 30 30 H 0.96997 * 120.00177 * 354.93274 * 8 7 5 31 31 H 0.96992 * 119.99998 * 264.99956 * 13 3 2 32 32 H 0.97004 * 120.00122 * 359.97438 * 16 14 13 33 33 H 1.07999 * 126.08758 * 359.94686 * 18 17 16 34 34 H 1.07991 * 125.83900 * 179.97438 * 19 18 17 35 35 H 1.09003 * 115.54880 * 334.33512 * 22 21 17 36 36 H 1.09002 * 117.49643 * 0.02562 * 23 22 21 37 37 H 1.09000 * 117.50279 * 145.02149 * 23 22 21 38 38 H 1.08996 * 117.49960 * 252.50978 * 24 23 22 39 39 H 1.09002 * 117.52107 * 107.47619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5975 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2973 9 14 3.1339 0.9232 2.8818 10 1 3.2702 2.2112 3.6083 11 1 1.7041 0.6861 2.5585 12 1 3.6383 -0.1822 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4482 2.6598 -1.3861 15 8 -0.3370 2.6312 -0.4582 16 7 0.1028 3.2590 -2.5429 17 6 -1.1559 3.8459 -2.6758 18 6 -2.1282 3.8876 -1.7242 19 6 -3.2254 4.5651 -2.2631 20 7 -2.9296 4.9185 -3.4877 21 7 -1.6293 4.4818 -3.7714 22 6 -0.9104 4.6771 -5.0328 23 6 -1.5490 5.5973 -6.0749 24 6 -1.5315 4.0840 -6.2991 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8787 0.5739 0.4633 31 1 2.2908 2.1165 -1.9977 32 1 0.7296 3.2829 -3.2828 33 1 -2.0635 3.4709 -0.7299 34 1 -4.1579 4.7630 -1.7556 35 1 0.1771 4.6784 -4.9588 36 1 -2.5040 6.0579 -5.8218 37 1 -0.8818 6.2045 -6.6867 38 1 -0.8527 3.6955 -7.0582 39 1 -2.4749 3.5482 -6.1935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934526432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:17 Heat of formation + Delta-G solvation = 83.749125 kcal Electronic energy + Delta-G solvation = -21771.930859 eV Core-core repulsion = 18524.810992 eV Total energy + Delta-G solvation = -3247.119867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40059 -39.57361 -37.22803 -35.79754 -34.41549 -32.53732 -31.50376 -30.81627 -28.66491 -27.06483 -23.60926 -22.84608 -22.67008 -22.08711 -20.55396 -19.97426 -19.72089 -18.45671 -18.07737 -16.86783 -15.78469 -15.67702 -15.33997 -14.94257 -14.46728 -14.14602 -13.60664 -13.34756 -13.09327 -12.79621 -12.73685 -12.62386 -12.37560 -11.89784 -11.81068 -11.31549 -10.97757 -10.88748 -10.75989 -10.74190 -10.55311 -10.48077 -9.90081 -9.73035 -9.51765 -9.15961 -8.75459 -8.37416 -8.29188 -7.78699 -6.64454 -4.27276 1.88926 2.06713 3.00189 3.02311 3.39121 3.39986 3.44103 3.58841 3.71413 4.17951 4.37308 4.40498 4.53113 4.60257 5.08565 5.10432 5.13607 5.27337 5.48701 5.66870 5.74713 5.80000 6.05458 6.08180 6.15088 6.25091 6.31131 6.61889 6.76541 6.86405 6.89711 6.99132 7.05757 7.25055 7.35546 7.40043 7.65857 7.87178 8.19185 8.48462 8.66599 8.98369 9.39990 10.74659 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.004233 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.123997 B = 6613.002907 C = 7074.070711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.265 3.735 4 H 0.047 0.953 5 C -0.624 4.624 6 H 0.062 0.938 7 C 0.046 3.954 8 N -0.892 5.892 9 Si 1.033 2.967 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.284 1.284 13 N -0.708 5.708 14 C 0.701 3.299 15 O -0.562 6.562 16 N -0.669 5.669 17 C 0.342 3.658 18 C -0.286 4.286 19 C 0.060 3.940 20 N -0.305 5.305 21 N -0.367 5.367 22 C 0.076 3.924 23 C -0.159 4.159 24 C -0.179 4.179 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.271 0.729 31 H 0.390 0.610 32 H 0.401 0.599 33 H 0.177 0.823 34 H 0.184 0.816 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 6.063 -12.873 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.162 3.838 4 H 0.065 0.935 5 C -0.662 4.662 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.524 5.524 9 Si 0.860 3.140 10 H -0.209 1.209 11 H -0.192 1.192 12 H -0.209 1.209 13 N -0.360 5.360 14 C 0.401 3.599 15 O -0.437 6.437 16 N -0.319 5.319 17 C 0.121 3.879 18 C -0.318 4.318 19 C -0.125 4.125 20 N -0.127 5.127 21 N -0.155 5.155 22 C -0.028 4.028 23 C -0.197 4.197 24 C -0.217 4.217 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.223 0.777 32 H 0.235 0.765 33 H 0.194 0.806 34 H 0.201 0.799 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.643 6.209 -11.459 18.158 hybrid contribution 1.042 -0.040 -1.819 2.097 sum -11.601 6.169 -13.278 18.681 Atomic orbital electron populations 1.21880 0.97195 0.98871 1.02120 1.22232 0.93909 0.99645 1.01147 1.19099 0.95657 0.88294 0.80758 0.93548 1.22029 0.89564 1.49728 1.04851 0.92009 1.25645 0.96824 0.91894 1.01807 1.70837 1.10498 1.39982 1.31062 0.84191 0.76461 0.77497 0.75863 1.20910 1.19160 1.20942 1.45560 1.12728 1.58523 1.19148 1.15829 0.83805 0.78783 0.81488 1.90832 1.50744 1.63727 1.38429 1.42166 1.13687 1.58979 1.17112 1.17694 0.86718 0.94745 0.88748 1.21704 0.92992 1.14067 1.03043 1.23749 0.99682 0.97111 0.91996 1.77332 0.92709 1.24916 1.17742 1.47853 1.12064 1.45910 1.09636 1.21649 0.94548 1.08240 0.78347 1.23249 1.03754 0.93323 0.99386 1.23467 1.03662 0.96666 0.97935 0.93303 0.95160 0.92770 0.93214 0.92013 0.91930 0.77730 0.76467 0.80579 0.79940 0.84646 0.86970 0.87550 0.87485 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.53 37.16 0.32 -2.52 16 2 C -0.13 -2.81 5.03 -26.73 -0.13 -2.94 16 3 C 0.27 6.05 1.78 -69.08 -0.12 5.93 16 4 H 0.05 1.16 5.99 -51.93 -0.31 0.85 16 5 C -0.62 -16.19 8.97 -34.44 -0.31 -16.49 16 6 H 0.06 1.67 7.96 -52.48 -0.42 1.26 16 7 C 0.05 1.25 5.25 -17.82 -0.09 1.16 16 8 N -0.89 -25.82 13.70 55.43 0.76 -25.06 16 9 Si 1.03 24.33 26.33 -169.99 -4.48 19.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -5.95 5.88 56.52 0.33 -5.61 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.71 -13.43 5.03 -59.81 -0.30 -13.73 16 14 C 0.70 12.89 7.12 -86.91 -0.62 12.27 16 15 O -0.56 -11.85 10.61 5.29 0.06 -11.79 16 16 N -0.67 -9.82 5.42 -15.84 -0.09 -9.91 16 17 C 0.34 5.31 7.66 -153.14 -1.17 4.13 16 18 C -0.29 -4.67 9.65 -39.78 -0.38 -5.05 16 19 C 0.06 0.84 12.01 -17.40 -0.21 0.63 16 20 N -0.31 -4.43 11.98 30.60 0.37 -4.06 16 21 N -0.37 -5.04 3.95 -53.90 -0.21 -5.25 16 22 C 0.08 0.76 6.65 -67.93 -0.45 0.30 16 23 C -0.16 -1.32 10.18 -26.74 -0.27 -1.59 16 24 C -0.18 -1.48 10.46 -26.73 -0.28 -1.76 16 25 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.38 5.64 -51.93 -0.29 1.09 16 30 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 31 H 0.39 6.45 8.54 -40.82 -0.35 6.10 16 32 H 0.40 4.48 8.09 -40.82 -0.33 4.15 16 33 H 0.18 3.19 5.82 -52.49 -0.31 2.88 16 34 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.14 1.05 7.67 -51.93 -0.40 0.65 16 36 H 0.11 1.09 7.83 -51.93 -0.41 0.69 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -31.36 318.96 -8.09 -39.45 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.27 Total: 11.64 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.73 Total: -5.94 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.53 Total: -58.01 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.06 Total: -11.79 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.48 Total: 19.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.36 -8.09 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934526432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.201 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds