Wall clock time and date at job start Tue Mar 31 2020 01:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09002 * 109.46907 * 54.42618 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.08005 * 119.99629 * 114.20010 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31516 * 119.99377 * 159.34627 * 7 5 3 9 9 Si 1.86791 * 120.00253 * 339.34456 * 7 5 3 10 10 H 1.48498 * 109.47412 * 269.99915 * 9 7 5 11 11 H 1.48495 * 109.47035 * 30.00059 * 9 7 5 12 12 H 1.48500 * 109.47245 * 150.00182 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34782 * 119.99854 * 84.99547 * 13 3 2 15 15 O 1.21586 * 120.00225 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99680 * 179.97438 * 14 13 3 17 17 C 1.39505 * 119.99984 * 180.02562 * 16 14 13 18 18 C 1.36108 * 126.21239 * 0.02931 * 17 16 14 19 19 C 1.39765 * 107.82421 * 179.97438 * 18 17 16 20 20 N 1.30845 * 108.32029 * 359.97438 * 19 18 17 21 21 N 1.35243 * 126.21570 * 179.71311 * 17 16 14 22 22 C 1.46499 * 126.04766 * 0.02562 * 21 17 16 23 23 C 1.52992 * 117.50391 * 188.62255 * 22 21 17 24 24 C 1.52999 * 60.00269 * 252.51290 * 23 22 21 25 25 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 26 26 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 28 28 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 29 29 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 30 30 H 0.96997 * 120.00177 * 354.93274 * 8 7 5 31 31 H 0.96992 * 119.99998 * 264.99956 * 13 3 2 32 32 H 0.97004 * 120.00122 * 359.97438 * 16 14 13 33 33 H 1.07999 * 126.08758 * 359.94686 * 18 17 16 34 34 H 1.07991 * 125.83900 * 179.97438 * 19 18 17 35 35 H 1.09003 * 115.54880 * 334.33512 * 22 21 17 36 36 H 1.09002 * 117.49643 * 0.02562 * 23 22 21 37 37 H 1.09000 * 117.50279 * 145.02149 * 23 22 21 38 38 H 1.08996 * 117.49960 * 252.50978 * 24 23 22 39 39 H 1.09002 * 117.52107 * 107.47619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5975 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2973 9 14 3.1339 0.9232 2.8818 10 1 3.2702 2.2112 3.6083 11 1 1.7041 0.6861 2.5585 12 1 3.6383 -0.1822 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4482 2.6598 -1.3861 15 8 -0.3370 2.6312 -0.4582 16 7 0.1028 3.2590 -2.5429 17 6 -1.1559 3.8459 -2.6758 18 6 -2.1282 3.8876 -1.7242 19 6 -3.2254 4.5651 -2.2631 20 7 -2.9296 4.9185 -3.4877 21 7 -1.6293 4.4818 -3.7714 22 6 -0.9104 4.6771 -5.0328 23 6 -1.5490 5.5973 -6.0749 24 6 -1.5315 4.0840 -6.2991 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8787 0.5739 0.4633 31 1 2.2908 2.1165 -1.9977 32 1 0.7296 3.2829 -3.2828 33 1 -2.0635 3.4709 -0.7299 34 1 -4.1579 4.7630 -1.7556 35 1 0.1771 4.6784 -4.9588 36 1 -2.5040 6.0579 -5.8218 37 1 -0.8818 6.2045 -6.6867 38 1 -0.8527 3.6955 -7.0582 39 1 -2.4749 3.5482 -6.1935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934526432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:16 Heat of formation + Delta-G solvation = 62.738677 kcal Electronic energy + Delta-G solvation = -21772.841940 eV Core-core repulsion = 18524.810992 eV Total energy + Delta-G solvation = -3248.030948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.55519 -40.99432 -37.99360 -37.43025 -35.83624 -34.49667 -33.10778 -31.89193 -29.97874 -28.81734 -24.61119 -24.38630 -23.65022 -23.37243 -21.87475 -21.38804 -21.10380 -20.04089 -19.33735 -18.44740 -17.26795 -16.93528 -16.31039 -16.14798 -15.70805 -15.60137 -15.15865 -14.70942 -14.50795 -14.41049 -14.21088 -14.00145 -13.76644 -13.59052 -12.64410 -12.52409 -12.49763 -12.34387 -12.14059 -12.04327 -11.84381 -11.66450 -11.53894 -11.46678 -11.15612 -11.00615 -10.44970 -9.94818 -9.72261 -9.04508 -8.78307 -6.41100 0.75198 0.93142 1.51572 1.52528 1.73815 1.82732 1.85895 2.27149 2.45761 2.72493 3.00137 3.19637 3.41416 3.70396 3.87979 4.17308 4.24616 4.35063 4.42991 4.52000 4.58158 4.67415 4.71982 4.87478 4.94764 4.98950 5.12728 5.15239 5.18315 5.23198 5.31509 5.57950 5.59714 5.64913 5.82250 5.91983 6.04367 6.15442 6.55550 6.71204 7.05568 7.29752 7.52282 8.60040 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.004233 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.123997 B = 6613.002907 C = 7074.070711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.029 0.971 5 C -0.617 4.617 6 H 0.043 0.957 7 C 0.003 3.997 8 N -0.924 5.924 9 Si 1.066 2.934 10 H -0.277 1.277 11 H -0.250 1.250 12 H -0.281 1.281 13 N -0.707 5.707 14 C 0.704 3.296 15 O -0.588 6.588 16 N -0.651 5.651 17 C 0.329 3.671 18 C -0.311 4.311 19 C 0.062 3.938 20 N -0.314 5.314 21 N -0.361 5.361 22 C 0.045 3.955 23 C -0.150 4.150 24 C -0.167 4.167 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.261 0.739 31 H 0.402 0.598 32 H 0.419 0.581 33 H 0.156 0.844 34 H 0.213 0.787 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 6.461 -14.347 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.047 0.953 5 C -0.655 4.655 6 H 0.061 0.939 7 C -0.199 4.199 8 N -0.558 5.558 9 Si 0.888 3.112 10 H -0.203 1.203 11 H -0.174 1.174 12 H -0.207 1.207 13 N -0.360 5.360 14 C 0.404 3.596 15 O -0.466 6.466 16 N -0.303 5.303 17 C 0.108 3.892 18 C -0.343 4.343 19 C -0.123 4.123 20 N -0.137 5.137 21 N -0.148 5.148 22 C -0.057 4.057 23 C -0.187 4.187 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.237 0.763 32 H 0.257 0.743 33 H 0.173 0.827 34 H 0.230 0.770 35 H 0.176 0.824 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.769 6.636 -13.016 20.076 hybrid contribution 1.363 -0.091 -1.494 2.025 sum -12.406 6.546 -14.511 20.182 Atomic orbital electron populations 1.21741 0.95592 1.00156 1.01386 1.22140 0.95213 0.98360 1.00974 1.18764 0.93368 0.89315 0.81872 0.95348 1.22197 0.91283 1.48110 1.03927 0.93868 1.26684 0.96943 0.91611 1.04636 1.70932 1.11633 1.42632 1.30598 0.83765 0.76357 0.77775 0.73310 1.20289 1.17354 1.20694 1.45211 1.13509 1.58778 1.18452 1.15772 0.83142 0.78634 0.82051 1.90834 1.51388 1.64581 1.39775 1.41728 1.13941 1.58050 1.16564 1.17710 0.86677 0.95297 0.89563 1.21674 0.94535 1.15378 1.02749 1.24171 1.00242 0.96202 0.91709 1.77299 0.93338 1.25070 1.17957 1.48103 1.11731 1.44765 1.10222 1.22236 0.95638 1.10401 0.77409 1.23321 1.03300 0.93619 0.98491 1.23507 1.03175 0.96625 0.97222 0.93550 0.92805 0.93981 0.92700 0.92913 0.92981 0.76313 0.74345 0.82661 0.77002 0.82358 0.88649 0.84761 0.84718 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.53 71.98 0.61 -4.37 16 2 C -0.13 -5.34 5.03 30.59 0.15 -5.19 16 3 C 0.27 12.21 1.78 44.25 0.08 12.29 16 4 H 0.03 1.41 5.99 -2.39 -0.01 1.39 16 5 C -0.62 -32.06 8.97 25.60 0.23 -31.83 16 6 H 0.04 2.36 7.96 -2.91 -0.02 2.34 16 7 C 0.00 0.17 5.25 84.65 0.44 0.62 16 8 N -0.92 -54.20 13.70 21.45 0.29 -53.90 16 9 Si 1.07 48.89 26.33 68.60 1.81 50.70 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.25 -10.68 5.88 99.48 0.59 -10.10 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.71 -26.11 5.03 -461.40 -2.32 -28.43 16 14 C 0.70 25.21 7.12 179.05 1.28 26.49 16 15 O -0.59 -24.62 10.61 -3.99 -0.04 -24.66 16 16 N -0.65 -18.16 5.42 -322.30 -1.75 -19.90 16 17 C 0.33 9.85 7.66 131.31 1.01 10.86 16 18 C -0.31 -10.03 9.65 22.14 0.21 -9.82 16 19 C 0.06 1.66 12.01 85.21 1.02 2.68 16 20 N -0.31 -8.71 11.98 -57.09 -0.68 -9.39 16 21 N -0.36 -9.32 3.95 -324.45 -1.28 -10.60 16 22 C 0.05 0.79 6.65 44.99 0.30 1.08 16 23 C -0.15 -2.07 10.18 30.59 0.31 -1.76 16 24 C -0.17 -2.30 10.46 30.59 0.32 -1.98 16 25 H 0.05 1.77 5.63 -2.38 -0.01 1.76 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 2.29 5.64 -2.39 -0.01 2.28 16 30 H 0.26 15.27 8.73 -92.71 -0.81 14.46 16 31 H 0.40 12.80 8.54 -92.71 -0.79 12.01 16 32 H 0.42 8.44 8.09 -92.70 -0.75 7.69 16 33 H 0.16 5.71 5.82 -2.91 -0.02 5.69 16 34 H 0.21 4.03 8.06 -2.92 -0.02 4.01 16 35 H 0.16 1.93 7.67 -2.39 -0.02 1.91 16 36 H 0.10 1.69 7.83 -2.39 -0.02 1.67 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.83 318.96 1.39 -66.44 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.61 Total: 30.69 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.97 Total: -0.94 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -5.74 Total: -122.23 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.81 Total: 50.70 kcal Total: -67.83 1.39 -66.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934526432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.183 kcal (2) G-P(sol) polarization free energy of solvation -67.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds