Wall clock time and date at job start Tue Mar 31 2020 00:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.46912 * 2 1 4 4 N 1.30458 * 125.99007 * 270.14440 * 3 2 1 5 5 N 1.39938 * 108.89511 * 180.26312 * 4 3 2 6 6 H 0.96991 * 125.75122 * 179.77313 * 5 4 3 7 7 C 1.34257 * 108.49049 * 359.75466 * 5 4 3 8 8 C 1.38037 * 107.42070 * 359.97438 * 7 5 4 9 9 C 1.47432 * 126.41519 * 179.97438 * 8 7 5 10 10 O 1.21605 * 120.00179 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00102 * 0.03003 * 9 8 7 12 12 C 1.47031 * 125.64691 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26879 * 181.01415 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 H 1.08999 * 111.00338 * 82.57390 * 14 13 12 16 16 N 1.46503 * 110.99889 * 206.42102 * 14 13 12 17 17 C 1.36940 * 119.99702 * 204.99896 * 16 14 13 18 18 H 1.08001 * 120.00403 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00018 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00394 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46934 * 89.99883 * 21 19 17 23 23 H 1.48498 * 109.47257 * 210.00107 * 21 19 17 24 24 H 1.48500 * 109.47237 * 330.00674 * 21 19 17 25 25 C 1.47422 * 125.65171 * 179.97438 * 11 9 8 26 26 H 1.08999 * 109.47188 * 59.99778 * 1 2 3 27 27 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47003 * 299.99498 * 1 2 3 29 29 H 1.09001 * 109.46847 * 239.99970 * 2 1 3 30 30 H 1.08999 * 109.47188 * 120.00221 * 2 1 3 31 31 H 1.08009 * 126.28593 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.88059 * 61.59780 * 12 11 9 33 33 H 1.08994 * 109.87878 * 300.43060 * 12 11 9 34 34 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 35 35 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 36 36 H 0.96997 * 120.00424 * 25.00514 * 16 14 13 37 37 H 0.96992 * 120.00164 * 179.97438 * 20 19 17 38 38 H 1.09000 * 110.36378 * 37.07938 * 25 11 9 39 39 H 1.08998 * 110.37024 * 274.75654 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2853 2.1444 -1.0556 5 7 2.7378 3.4031 -0.6442 6 1 2.9982 4.1310 -1.2300 7 6 2.7503 3.4334 0.6979 8 6 2.3086 2.2038 1.1432 9 6 2.1597 1.7836 2.5485 10 8 1.7585 0.6658 2.8097 11 7 2.4683 2.6384 3.5437 12 6 2.9612 4.0128 3.3708 13 6 3.2001 4.5945 4.7801 14 6 3.3670 3.3250 5.6564 15 1 4.3853 2.9409 5.5977 16 7 2.9882 3.5928 7.0460 17 6 3.5138 2.8336 8.0573 18 1 4.2078 2.0377 7.8305 19 6 3.1546 3.0869 9.3740 20 7 3.6601 2.3576 10.3461 21 14 1.9548 4.4639 9.7665 22 1 0.5684 3.9317 9.7515 23 1 2.2584 5.0168 11.1108 24 1 2.0837 5.5377 8.7489 25 6 2.3665 2.3507 4.9860 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.0500 4.2671 1.3157 32 1 2.2166 4.6102 2.8446 33 1 3.8958 4.0036 2.8102 34 1 4.1074 5.1984 4.7993 35 1 2.3412 5.1812 5.1059 36 1 2.3652 4.3077 7.2498 37 1 3.4093 2.5348 11.2661 38 1 2.6500 1.3178 5.1877 39 1 1.3540 2.5433 5.3408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969175254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:42 Heat of formation + Delta-G solvation = 58.725370 kcal Electronic energy + Delta-G solvation = -21554.554075 eV Core-core repulsion = 18306.349097 eV Total energy + Delta-G solvation = -3248.204978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63356 -39.40674 -37.26799 -34.54270 -34.09819 -31.87183 -30.60522 -30.47844 -29.88923 -27.69276 -24.57092 -24.11852 -22.98519 -21.75482 -20.72885 -19.98940 -19.44205 -17.98180 -17.29793 -16.50349 -16.16274 -15.35442 -15.00177 -14.79378 -14.40805 -14.15157 -13.81013 -13.73185 -13.27343 -13.21605 -12.67094 -12.55135 -12.39165 -12.34422 -11.79276 -11.54811 -11.31723 -11.25518 -10.93248 -10.82252 -10.81057 -10.53377 -10.13016 -9.74426 -9.67483 -9.61620 -9.06380 -8.98244 -8.37757 -7.40553 -5.84277 -3.22768 1.35214 2.04601 2.47230 3.21795 3.31719 3.35305 3.41364 3.52171 4.29739 4.41324 4.51853 4.71518 4.82398 4.94855 4.99974 5.18042 5.22350 5.33033 5.35823 5.41180 5.53276 5.54858 5.62533 5.77078 5.83854 5.90815 6.08155 6.08926 6.18736 6.21890 6.35290 6.46733 6.55415 6.73635 6.86924 7.34931 7.76758 7.90079 8.34001 8.43808 9.10429 9.82154 9.99606 11.33407 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.003848 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.727595 B = 7275.045665 C = 7774.945771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.138 3.862 4 N -0.302 5.302 5 N -0.466 5.466 6 H 0.442 0.558 7 C 0.089 3.911 8 C -0.277 4.277 9 C 0.602 3.398 10 O -0.540 6.540 11 N -0.612 5.612 12 C 0.097 3.903 13 C -0.146 4.146 14 C 0.177 3.823 15 H 0.077 0.923 16 N -0.735 5.735 17 C -0.254 4.254 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.929 5.929 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.085 3.915 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.196 0.804 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 5.366 -22.399 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.030 4.030 4 N -0.125 5.125 5 N -0.170 5.170 6 H 0.287 0.713 7 C -0.063 4.063 8 C -0.292 4.292 9 C 0.391 3.609 10 O -0.418 6.418 11 N -0.346 5.346 12 C -0.027 4.027 13 C -0.185 4.185 14 C 0.065 3.935 15 H 0.095 0.905 16 N -0.376 5.376 17 C -0.384 4.384 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.575 5.575 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.040 4.040 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.212 0.788 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.434 4.576 -23.392 23.959 hybrid contribution -0.671 1.635 0.985 2.023 sum -3.106 6.211 -22.407 23.458 Atomic orbital electron populations 1.21613 0.93985 1.02109 1.01918 1.20135 0.96551 0.88012 1.04171 1.22485 0.94933 0.96946 0.88630 1.77131 1.21956 0.90826 1.22542 1.46126 1.51805 1.13494 1.05569 0.71341 1.23960 0.97288 0.99564 0.85517 1.20336 1.18710 0.95465 0.94669 1.16874 0.77333 0.83895 0.82764 1.90749 1.47388 1.19829 1.83870 1.48308 1.65400 1.13601 1.07326 1.22267 0.98181 0.83414 0.98788 1.23005 1.02789 0.99222 0.93469 1.21283 0.96676 0.91387 0.84112 0.90525 1.42640 1.54357 1.39673 1.00955 1.19094 1.22210 1.11696 0.85371 0.88926 1.24685 0.99686 0.98781 0.95499 1.69697 1.47056 1.41453 0.99324 0.86568 0.81824 0.82653 0.77544 1.20918 1.21623 1.20277 1.23308 1.01299 1.02289 0.77129 0.93116 0.91856 0.92097 0.90685 0.87913 0.78763 0.91705 0.91414 0.89895 0.90623 0.80255 0.92876 0.90402 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 37.16 0.37 -1.16 16 2 C -0.05 -0.59 5.97 -27.88 -0.17 -0.76 16 3 C 0.14 1.81 6.52 -82.02 -0.53 1.27 16 4 N -0.30 -3.64 12.63 33.89 0.43 -3.22 16 5 N -0.47 -3.99 7.29 30.85 0.22 -3.76 16 6 H 0.44 2.03 8.96 -182.73 -1.64 0.40 16 7 C 0.09 0.81 10.49 -16.56 -0.17 0.64 16 8 C -0.28 -3.62 6.10 -105.07 -0.64 -4.26 16 9 C 0.60 9.59 7.85 -12.52 -0.10 9.49 16 10 O -0.54 -10.29 15.18 5.27 0.08 -10.21 16 11 N -0.61 -9.04 3.33 -171.78 -0.57 -9.62 16 12 C 0.10 1.03 4.98 -3.06 -0.02 1.02 16 13 C -0.15 -1.84 6.60 -24.90 -0.16 -2.01 16 14 C 0.18 3.12 3.71 -65.78 -0.24 2.87 16 15 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 16 N -0.74 -16.24 5.05 -51.35 -0.26 -16.50 16 17 C -0.25 -6.88 10.44 -15.06 -0.16 -7.04 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -28.53 13.97 55.49 0.78 -27.75 16 21 Si 0.88 21.25 27.74 -169.99 -4.71 16.54 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 25 C 0.08 1.49 6.60 -2.53 -0.02 1.48 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.39 6.56 -51.93 -0.34 1.05 16 31 H 0.20 1.15 4.43 -52.48 -0.23 0.91 16 32 H 0.06 0.54 7.01 -51.93 -0.36 0.18 16 33 H 0.07 0.57 6.85 -51.93 -0.36 0.22 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 36 H 0.36 7.83 5.63 -40.82 -0.23 7.60 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 38 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -34.31 319.36 -7.71 -42.01 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.54 Total: 5.96 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.94 Total: 1.72 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.60 Total: -60.84 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.31 -7.71 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969175254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.738 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds