Wall clock time and date at job start Tue Mar 31 2020 00:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.46912 * 2 1 4 4 N 1.30458 * 125.99007 * 270.14440 * 3 2 1 5 5 N 1.39938 * 108.89511 * 180.26312 * 4 3 2 6 6 H 0.96991 * 125.75122 * 179.77313 * 5 4 3 7 7 C 1.34257 * 108.49049 * 359.75466 * 5 4 3 8 8 C 1.38037 * 107.42070 * 359.97438 * 7 5 4 9 9 C 1.47432 * 126.41519 * 179.97438 * 8 7 5 10 10 O 1.21605 * 120.00179 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00102 * 0.03003 * 9 8 7 12 12 C 1.47031 * 125.64691 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26879 * 181.01415 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 H 1.08999 * 111.00338 * 82.57390 * 14 13 12 16 16 N 1.46503 * 110.99889 * 206.42102 * 14 13 12 17 17 C 1.36940 * 119.99702 * 204.99896 * 16 14 13 18 18 H 1.08001 * 120.00403 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00018 * 180.02562 * 17 16 14 20 20 N 1.31621 * 120.00394 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46934 * 89.99883 * 21 19 17 23 23 H 1.48498 * 109.47257 * 210.00107 * 21 19 17 24 24 H 1.48500 * 109.47237 * 330.00674 * 21 19 17 25 25 C 1.47422 * 125.65171 * 179.97438 * 11 9 8 26 26 H 1.08999 * 109.47188 * 59.99778 * 1 2 3 27 27 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47003 * 299.99498 * 1 2 3 29 29 H 1.09001 * 109.46847 * 239.99970 * 2 1 3 30 30 H 1.08999 * 109.47188 * 120.00221 * 2 1 3 31 31 H 1.08009 * 126.28593 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.88059 * 61.59780 * 12 11 9 33 33 H 1.08994 * 109.87878 * 300.43060 * 12 11 9 34 34 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 35 35 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 36 36 H 0.96997 * 120.00424 * 25.00514 * 16 14 13 37 37 H 0.96992 * 120.00164 * 179.97438 * 20 19 17 38 38 H 1.09000 * 110.36378 * 37.07938 * 25 11 9 39 39 H 1.08998 * 110.37024 * 274.75654 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2853 2.1444 -1.0556 5 7 2.7378 3.4031 -0.6442 6 1 2.9982 4.1310 -1.2300 7 6 2.7503 3.4334 0.6979 8 6 2.3086 2.2038 1.1432 9 6 2.1597 1.7836 2.5485 10 8 1.7585 0.6658 2.8097 11 7 2.4683 2.6384 3.5437 12 6 2.9612 4.0128 3.3708 13 6 3.2001 4.5945 4.7801 14 6 3.3670 3.3250 5.6564 15 1 4.3853 2.9409 5.5977 16 7 2.9882 3.5928 7.0460 17 6 3.5138 2.8336 8.0573 18 1 4.2078 2.0377 7.8305 19 6 3.1546 3.0869 9.3740 20 7 3.6601 2.3576 10.3461 21 14 1.9548 4.4639 9.7665 22 1 0.5684 3.9317 9.7515 23 1 2.2584 5.0168 11.1108 24 1 2.0837 5.5377 8.7489 25 6 2.3665 2.3507 4.9860 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.0500 4.2671 1.3157 32 1 2.2166 4.6102 2.8446 33 1 3.8958 4.0036 2.8102 34 1 4.1074 5.1984 4.7993 35 1 2.3412 5.1812 5.1059 36 1 2.3652 4.3077 7.2498 37 1 3.4093 2.5348 11.2661 38 1 2.6500 1.3178 5.1877 39 1 1.3540 2.5433 5.3408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969175254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:42 Heat of formation + Delta-G solvation = 32.595235 kcal Electronic energy + Delta-G solvation = -21555.687163 eV Core-core repulsion = 18306.349097 eV Total energy + Delta-G solvation = -3249.338066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.51053 -40.58450 -38.57180 -36.09748 -35.14709 -33.64025 -31.90989 -31.36549 -31.02743 -29.05041 -25.98164 -25.01228 -24.55632 -22.72525 -22.03677 -21.18321 -20.36506 -19.78334 -18.38335 -17.65595 -17.44582 -16.43922 -16.33240 -15.89328 -15.72763 -15.33350 -15.15713 -14.93652 -14.71290 -14.30402 -14.21599 -13.73584 -13.69412 -13.34683 -13.28203 -12.96119 -12.55183 -12.35838 -12.27280 -12.17214 -12.01964 -11.83553 -11.77965 -11.53562 -11.03866 -10.84670 -10.55390 -9.93022 -9.59148 -9.32175 -8.02150 -5.38408 0.53650 1.06281 1.39831 1.45224 1.51904 1.74321 2.11427 2.42237 2.49940 3.27224 3.39174 3.53082 3.69224 3.76904 3.90940 4.12169 4.21170 4.28450 4.36410 4.38467 4.45353 4.50119 4.53840 4.66135 4.69086 4.88497 5.01031 5.02902 5.14610 5.22399 5.26163 5.30182 5.39184 5.43139 5.77368 6.21533 6.26830 6.49299 6.66245 7.07104 7.25976 7.80187 8.00279 9.19162 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.003848 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.727595 B = 7275.045665 C = 7774.945771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.124 3.876 4 N -0.319 5.319 5 N -0.444 5.444 6 H 0.462 0.538 7 C 0.125 3.875 8 C -0.313 4.313 9 C 0.596 3.404 10 O -0.588 6.588 11 N -0.613 5.613 12 C 0.092 3.908 13 C -0.131 4.131 14 C 0.167 3.833 15 H 0.063 0.937 16 N -0.737 5.737 17 C -0.239 4.239 18 H 0.054 0.946 19 C -0.062 4.062 20 N -0.984 5.984 21 Si 0.957 3.043 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.239 1.239 25 C 0.093 3.907 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.237 0.763 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.371 0.629 37 H 0.258 0.742 38 H 0.038 0.962 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 9.217 -25.194 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.044 4.044 4 N -0.142 5.142 5 N -0.151 5.151 6 H 0.311 0.689 7 C -0.029 4.029 8 C -0.328 4.328 9 C 0.387 3.613 10 O -0.470 6.470 11 N -0.346 5.346 12 C -0.030 4.030 13 C -0.169 4.169 14 C 0.057 3.943 15 H 0.081 0.919 16 N -0.379 5.379 17 C -0.370 4.370 18 H 0.072 0.928 19 C -0.254 4.254 20 N -0.634 5.634 21 Si 0.784 3.216 22 H -0.209 1.209 23 H -0.224 1.224 24 H -0.163 1.163 25 C -0.033 4.033 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.253 0.747 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.776 8.492 -26.303 27.779 hybrid contribution -0.481 0.374 1.745 1.848 sum -3.256 8.866 -24.559 26.312 Atomic orbital electron populations 1.21546 0.93460 1.02729 1.01135 1.20097 0.97035 0.88269 1.03630 1.22580 0.95370 0.97337 0.89106 1.77086 1.22611 0.92137 1.22359 1.46166 1.50012 1.12979 1.05910 0.68864 1.24368 0.94089 0.98718 0.85696 1.20166 1.22181 0.97634 0.92807 1.17356 0.76519 0.83352 0.84029 1.90719 1.49598 1.21977 1.84703 1.48292 1.65372 1.15397 1.05493 1.22648 1.00869 0.81035 0.98406 1.22949 1.04552 0.96612 0.92803 1.21450 0.95565 0.94560 0.82740 0.91876 1.42551 1.54405 1.39178 1.01757 1.19029 1.20521 1.10644 0.86815 0.92837 1.25567 1.02390 1.02131 0.95289 1.69898 1.49642 1.44164 0.99686 0.85387 0.78562 0.80002 0.77671 1.20941 1.22384 1.16298 1.22891 1.00474 1.00171 0.79737 0.92156 0.90637 0.94344 0.89244 0.90304 0.74742 0.87795 0.88070 0.87344 0.89649 0.79455 0.93286 0.94286 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.05 -1.24 5.97 29.85 0.18 -1.07 16 3 C 0.12 3.09 6.52 43.51 0.28 3.37 16 4 N -0.32 -6.87 12.63 -46.68 -0.59 -7.46 16 5 N -0.44 -5.65 7.29 -56.32 -0.41 -6.06 16 6 H 0.46 1.89 8.96 -213.44 -1.91 -0.02 16 7 C 0.13 1.70 10.49 84.27 0.88 2.58 16 8 C -0.31 -7.56 6.10 -20.15 -0.12 -7.68 16 9 C 0.60 18.80 7.85 86.67 0.68 19.48 16 10 O -0.59 -23.62 15.18 -4.05 -0.06 -23.68 16 11 N -0.61 -17.17 3.33 -815.66 -2.71 -19.88 16 12 C 0.09 1.50 4.98 86.73 0.43 1.93 16 13 C -0.13 -2.72 6.60 31.78 0.21 -2.51 16 14 C 0.17 5.71 3.71 46.38 0.17 5.89 16 15 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 16 N -0.74 -32.01 5.05 -316.37 -1.60 -33.60 16 17 C -0.24 -13.30 10.44 84.03 0.88 -12.42 16 18 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 19 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.98 -62.76 13.97 21.65 0.30 -62.46 16 21 Si 0.96 43.75 27.74 68.60 1.90 45.65 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.24 -9.35 6.52 99.48 0.65 -8.70 16 25 C 0.09 3.35 6.60 86.85 0.57 3.92 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.29 6.56 -2.39 -0.02 2.28 16 31 H 0.24 1.06 4.43 -2.91 -0.01 1.05 16 32 H 0.10 1.00 7.01 -2.39 -0.02 0.98 16 33 H 0.10 1.05 6.85 -2.39 -0.02 1.03 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.68 8.01 -2.39 -0.02 1.66 16 36 H 0.37 15.03 5.63 -92.71 -0.52 14.51 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -81.29 319.36 0.78 -80.51 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -1.40 Total: 18.83 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.35 Total: 8.17 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.01 Total: -129.48 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.65 kcal Total: -81.29 0.78 -80.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969175254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.103 kcal (2) G-P(sol) polarization free energy of solvation -81.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds