Wall clock time and date at job start Mon Mar 30 2020 23:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30854 * 125.41574 * 2 1 4 4 C 1.33323 * 109.68476 * 179.78239 * 3 2 1 5 5 C 1.36668 * 107.78304 * 0.37502 * 4 3 2 6 6 C 1.46766 * 126.84190 * 179.89128 * 5 4 3 7 7 O 1.21681 * 119.99830 * 359.69431 * 6 5 4 8 8 N 1.34777 * 119.99963 * 179.68742 * 6 5 4 9 9 C 1.46497 * 120.00376 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46725 * 35.00314 * 9 8 6 11 11 C 1.52997 * 109.47188 * 275.00479 * 9 8 6 12 12 C 1.52992 * 109.47081 * 155.00022 * 9 8 6 13 13 C 1.53953 * 113.74647 * 278.74078 * 12 9 8 14 14 N 1.47803 * 86.03866 * 222.08719 * 13 12 9 15 15 C 1.36940 * 134.45480 * 204.64597 * 14 13 12 16 16 H 1.08004 * 120.00062 * 179.86839 * 15 14 13 17 17 C 1.38806 * 119.99897 * 359.86583 * 15 14 13 18 18 N 1.31618 * 120.00303 * 0.02562 * 17 15 14 19 19 Si 1.86812 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47043 * 89.99918 * 19 17 15 21 21 H 1.48500 * 109.46918 * 209.99906 * 19 17 15 22 22 H 1.48498 * 109.46796 * 329.99912 * 19 17 15 23 23 C 1.47580 * 91.05616 * 24.54814 * 14 13 12 24 24 N 1.34497 * 125.41542 * 180.02562 * 2 1 3 25 25 H 0.96994 * 126.48013 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.47711 * 269.97560 * 1 2 3 27 27 H 1.09005 * 109.47327 * 29.98162 * 1 2 3 28 28 H 1.09005 * 109.47154 * 149.97514 * 1 2 3 29 29 H 1.07993 * 126.10927 * 180.28008 * 4 3 2 30 30 H 0.97006 * 119.99702 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 32 32 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 33 33 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 34 34 H 1.08997 * 112.94423 * 50.33745 * 12 9 8 35 35 H 1.08999 * 113.76379 * 336.35463 * 13 12 9 36 36 H 1.09004 * 113.76409 * 107.74717 * 13 12 9 37 37 H 0.96996 * 120.00162 * 180.02562 * 18 17 15 38 38 H 1.08999 * 113.77170 * 221.15419 * 23 14 13 39 39 H 1.09002 * 113.86789 * 89.76287 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0048 5 6 3.5976 -0.6608 -0.0006 6 6 4.8029 -1.4982 -0.0004 7 8 5.9038 -0.9799 -0.0006 8 7 4.6904 -2.8413 0.0002 9 6 5.8934 -3.6772 0.0010 10 1 6.6719 -3.1929 0.5905 11 6 6.3845 -3.8656 -1.4357 12 6 5.5661 -5.0415 0.6112 13 6 5.5662 -5.0482 2.1507 14 7 6.2713 -6.3427 2.0429 15 6 6.4002 -7.4354 2.8581 16 1 6.9880 -8.2826 2.5368 17 6 5.7755 -7.4541 4.0975 18 7 5.0588 -6.4219 4.4890 19 14 5.9520 -8.9445 5.2100 20 1 7.1373 -8.7697 6.0873 21 1 4.7332 -9.0846 6.0468 22 1 6.1256 -10.1637 4.3802 23 6 6.7782 -5.9861 0.7035 24 7 2.2864 -1.0961 -0.0005 25 1 1.9850 -2.0180 -0.0013 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5142 29 1 4.3977 1.3722 0.0102 30 1 3.8127 -3.2544 0.0002 31 1 5.6060 -4.3499 -2.0252 32 1 7.2799 -4.4872 -1.4350 33 1 6.6177 -2.8936 -1.8704 34 1 4.6826 -5.5031 0.1704 35 1 6.1689 -4.2552 2.5933 36 1 4.5713 -5.1236 2.5897 37 1 4.6226 -6.4349 5.3552 38 1 6.7493 -6.8091 -0.0107 39 1 7.7378 -5.4693 0.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969398218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:06 Heat of formation + Delta-G solvation = 68.242858 kcal Electronic energy + Delta-G solvation = -21289.902289 eV Core-core repulsion = 18042.110019 eV Total energy + Delta-G solvation = -3247.792269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.35994 -39.59008 -38.01999 -34.93646 -33.02245 -32.30112 -32.00638 -30.38493 -27.60187 -27.51306 -24.97886 -24.15395 -23.03271 -21.51268 -20.70500 -20.43907 -19.48646 -18.25479 -16.83115 -16.17798 -16.04719 -15.81072 -14.93538 -14.67240 -14.35421 -14.10000 -13.87562 -13.61164 -13.46216 -13.18208 -12.87021 -12.75470 -12.50657 -12.16967 -11.73102 -11.39896 -11.34796 -10.95919 -10.76482 -10.54185 -10.43324 -10.35175 -10.10123 -9.82916 -9.82100 -9.46794 -8.99889 -8.83767 -8.58796 -6.91963 -5.80733 -3.13125 1.19106 2.65437 2.67590 3.16286 3.35066 3.36251 3.41124 3.42909 4.12731 4.41349 4.63179 4.82002 5.02954 5.10648 5.16121 5.20840 5.22326 5.36049 5.48659 5.55294 5.59329 5.64645 5.72154 5.86965 5.95790 6.18227 6.29100 6.34842 6.39709 6.50978 6.59068 6.71247 6.98451 7.17694 7.30280 7.46757 7.50497 7.76172 7.93885 8.18421 9.00671 9.67118 10.55780 11.36396 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.003856 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.742201 B = 7259.704837 C = 8133.536612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.235 3.765 3 N -0.497 5.497 4 C 0.067 3.933 5 C -0.084 4.084 6 C 0.594 3.406 7 O -0.528 6.528 8 N -0.716 5.716 9 C 0.151 3.849 10 H 0.091 0.909 11 C -0.158 4.158 12 C -0.148 4.148 13 C 0.170 3.830 14 N -0.613 5.613 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.131 3.869 24 N -0.551 5.551 25 H 0.422 0.578 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.184 0.816 30 H 0.393 0.607 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.253 0.747 38 H 0.045 0.955 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 9.605 -12.109 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 N -0.218 5.218 4 C -0.086 4.086 5 C -0.200 4.200 6 C 0.380 3.620 7 O -0.404 6.404 8 N -0.365 5.365 9 C 0.047 3.953 10 H 0.109 0.891 11 C -0.217 4.217 12 C -0.168 4.168 13 C 0.045 3.955 14 N -0.339 5.339 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.004 3.996 24 N -0.156 5.156 25 H 0.261 0.739 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.201 0.799 30 H 0.226 0.774 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.070 10.559 -11.810 17.779 hybrid contribution -0.080 -2.274 0.802 2.412 sum -8.149 8.286 -11.008 16.007 Atomic orbital electron populations 1.20305 0.84294 1.04447 1.04165 1.23450 0.95877 0.81603 1.01988 1.70190 1.02181 1.28240 1.21155 1.22646 0.94687 0.91318 0.99977 1.21285 0.83747 0.96106 1.18889 1.16841 0.86867 0.81705 0.76602 1.90844 1.25796 1.73243 1.50516 1.46003 1.10299 1.05424 1.74793 1.21155 0.86702 0.90780 0.96692 0.89108 1.22137 1.01512 1.01788 0.96246 1.23836 1.00240 0.92858 0.99828 1.22300 0.97944 0.86959 0.88306 1.45997 1.57579 1.14512 1.15769 1.19041 1.26689 0.92768 0.96640 0.90226 1.24778 1.00208 0.97949 0.97475 1.69812 1.36556 1.29632 1.20943 0.86127 0.77163 0.81876 0.80645 1.21567 1.21630 1.20596 1.22485 0.93912 0.94375 0.88800 1.43257 1.06151 1.10286 1.55914 0.73918 0.89506 0.88742 0.90406 0.79926 0.77433 0.92803 0.91205 0.92618 0.89513 0.95537 0.91135 0.93664 0.93710 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.23 2.34 8.12 -155.61 -1.26 1.08 16 3 N -0.50 -6.39 11.20 -10.58 -0.12 -6.51 16 4 C 0.07 0.89 11.66 -17.47 -0.20 0.69 16 5 C -0.08 -1.08 7.08 -82.14 -0.58 -1.66 16 6 C 0.59 8.71 7.75 -12.81 -0.10 8.61 16 7 O -0.53 -9.48 16.57 5.21 0.09 -9.40 16 8 N -0.72 -9.38 5.07 -55.09 -0.28 -9.66 16 9 C 0.15 2.25 2.38 -67.94 -0.16 2.09 16 10 H 0.09 1.58 7.41 -51.93 -0.39 1.19 16 11 C -0.16 -2.03 9.31 37.16 0.35 -1.68 16 12 C -0.15 -2.54 3.47 -89.69 -0.31 -2.85 16 13 C 0.17 3.89 7.08 -2.84 -0.02 3.87 16 14 N -0.61 -15.49 3.70 -177.68 -0.66 -16.15 16 15 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 16 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -27.18 11.39 55.49 0.63 -26.55 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 2.56 7.64 -2.96 -0.02 2.54 16 24 N -0.55 -5.26 6.07 -7.01 -0.04 -5.31 16 25 H 0.42 2.75 8.32 -40.82 -0.34 2.41 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.39 4.15 7.85 -40.82 -0.32 3.83 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 36 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -34.81 331.61 -8.17 -42.98 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.57 Total: 2.69 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.20 Total: 5.92 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.47 Total: -64.17 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.81 -8.17 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969398218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.227 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds