Wall clock time and date at job start Mon Mar 30 2020 23:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30854 * 125.41574 * 2 1 4 4 C 1.33323 * 109.68476 * 179.78239 * 3 2 1 5 5 C 1.36668 * 107.78304 * 0.37502 * 4 3 2 6 6 C 1.46766 * 126.84190 * 179.89128 * 5 4 3 7 7 O 1.21681 * 119.99830 * 359.69431 * 6 5 4 8 8 N 1.34777 * 119.99963 * 179.68742 * 6 5 4 9 9 C 1.46497 * 120.00376 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46725 * 35.00314 * 9 8 6 11 11 C 1.52997 * 109.47188 * 275.00479 * 9 8 6 12 12 C 1.52992 * 109.47081 * 155.00022 * 9 8 6 13 13 C 1.53953 * 113.74647 * 278.74078 * 12 9 8 14 14 N 1.47803 * 86.03866 * 222.08719 * 13 12 9 15 15 C 1.36940 * 134.45480 * 204.64597 * 14 13 12 16 16 H 1.08004 * 120.00062 * 179.86839 * 15 14 13 17 17 C 1.38806 * 119.99897 * 359.86583 * 15 14 13 18 18 N 1.31618 * 120.00303 * 0.02562 * 17 15 14 19 19 Si 1.86812 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47043 * 89.99918 * 19 17 15 21 21 H 1.48500 * 109.46918 * 209.99906 * 19 17 15 22 22 H 1.48498 * 109.46796 * 329.99912 * 19 17 15 23 23 C 1.47580 * 91.05616 * 24.54814 * 14 13 12 24 24 N 1.34497 * 125.41542 * 180.02562 * 2 1 3 25 25 H 0.96994 * 126.48013 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.47711 * 269.97560 * 1 2 3 27 27 H 1.09005 * 109.47327 * 29.98162 * 1 2 3 28 28 H 1.09005 * 109.47154 * 149.97514 * 1 2 3 29 29 H 1.07993 * 126.10927 * 180.28008 * 4 3 2 30 30 H 0.97006 * 119.99702 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 32 32 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 33 33 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 34 34 H 1.08997 * 112.94423 * 50.33745 * 12 9 8 35 35 H 1.08999 * 113.76379 * 336.35463 * 13 12 9 36 36 H 1.09004 * 113.76409 * 107.74717 * 13 12 9 37 37 H 0.96996 * 120.00162 * 180.02562 * 18 17 15 38 38 H 1.08999 * 113.77170 * 221.15419 * 23 14 13 39 39 H 1.09002 * 113.86789 * 89.76287 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0048 5 6 3.5976 -0.6608 -0.0006 6 6 4.8029 -1.4982 -0.0004 7 8 5.9038 -0.9799 -0.0006 8 7 4.6904 -2.8413 0.0002 9 6 5.8934 -3.6772 0.0010 10 1 6.6719 -3.1929 0.5905 11 6 6.3845 -3.8656 -1.4357 12 6 5.5661 -5.0415 0.6112 13 6 5.5662 -5.0482 2.1507 14 7 6.2713 -6.3427 2.0429 15 6 6.4002 -7.4354 2.8581 16 1 6.9880 -8.2826 2.5368 17 6 5.7755 -7.4541 4.0975 18 7 5.0588 -6.4219 4.4890 19 14 5.9520 -8.9445 5.2100 20 1 7.1373 -8.7697 6.0873 21 1 4.7332 -9.0846 6.0468 22 1 6.1256 -10.1637 4.3802 23 6 6.7782 -5.9861 0.7035 24 7 2.2864 -1.0961 -0.0005 25 1 1.9850 -2.0180 -0.0013 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5142 29 1 4.3977 1.3722 0.0102 30 1 3.8127 -3.2544 0.0002 31 1 5.6060 -4.3499 -2.0252 32 1 7.2799 -4.4872 -1.4350 33 1 6.6177 -2.8936 -1.8704 34 1 4.6826 -5.5031 0.1704 35 1 6.1689 -4.2552 2.5933 36 1 4.5713 -5.1236 2.5897 37 1 4.6226 -6.4349 5.3552 38 1 6.7493 -6.8091 -0.0107 39 1 7.7378 -5.4693 0.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969398218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:05 Heat of formation + Delta-G solvation = 43.080781 kcal Electronic energy + Delta-G solvation = -21290.993398 eV Core-core repulsion = 18042.110019 eV Total energy + Delta-G solvation = -3248.883379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.25136 -40.87598 -39.56253 -36.30018 -34.32880 -33.75316 -32.92500 -31.60026 -29.38723 -28.33842 -26.62950 -25.71257 -24.32901 -22.72055 -21.74670 -21.57410 -20.82028 -19.42318 -18.76678 -17.45260 -17.09250 -16.89047 -16.73428 -15.85112 -15.70453 -15.52206 -15.05724 -14.82930 -14.67331 -14.26241 -14.12764 -13.53453 -13.37159 -13.27053 -13.20552 -13.11204 -12.93368 -12.73061 -12.54750 -12.03307 -11.77093 -11.60896 -11.49499 -11.29062 -11.23520 -11.01779 -10.87882 -10.21876 -9.52264 -8.93935 -7.92588 -5.26070 0.22359 1.44341 1.46381 1.54828 1.75095 1.81025 2.09350 2.27180 2.45937 3.28278 3.35070 3.41034 3.67600 3.82773 3.90980 4.10190 4.26479 4.30374 4.45092 4.57039 4.60471 4.72715 4.77174 4.79632 4.84218 4.86596 4.99581 5.06867 5.13162 5.23418 5.31959 5.38736 5.47556 5.52896 5.62957 5.91685 6.25859 6.42149 6.87138 6.90078 7.06712 7.59298 8.54613 9.24308 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.003856 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.742201 B = 7259.704837 C = 8133.536612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.248 3.752 3 N -0.529 5.529 4 C 0.055 3.945 5 C -0.099 4.099 6 C 0.596 3.404 7 O -0.568 6.568 8 N -0.706 5.706 9 C 0.160 3.840 10 H 0.063 0.937 11 C -0.150 4.150 12 C -0.108 4.108 13 C 0.166 3.834 14 N -0.644 5.644 15 C -0.236 4.236 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.955 5.955 19 Si 0.978 3.022 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.130 3.870 24 N -0.538 5.538 25 H 0.437 0.563 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.182 0.818 30 H 0.407 0.593 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.002 0.998 36 H 0.043 0.957 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 8.524 -13.640 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.017 4.017 3 N -0.250 5.250 4 C -0.099 4.099 5 C -0.216 4.216 6 C 0.383 3.617 7 O -0.447 6.447 8 N -0.356 5.356 9 C 0.055 3.945 10 H 0.081 0.919 11 C -0.208 4.208 12 C -0.128 4.128 13 C 0.040 3.960 14 N -0.371 5.371 15 C -0.364 4.364 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.604 5.604 19 Si 0.806 3.194 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.005 3.995 24 N -0.145 5.145 25 H 0.279 0.721 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.199 0.801 30 H 0.243 0.757 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.019 0.981 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.424 9.438 -13.384 18.894 hybrid contribution 0.310 -1.889 1.264 2.294 sum -9.114 7.548 -12.120 16.939 Atomic orbital electron populations 1.20552 0.80963 1.06187 1.05430 1.24300 0.97460 0.80878 0.99045 1.70209 1.02144 1.29778 1.22839 1.22794 0.95255 0.91785 1.00021 1.20916 0.84366 0.95665 1.20609 1.17020 0.86924 0.81960 0.75797 1.90819 1.27440 1.73966 1.52461 1.45829 1.10578 1.04965 1.74217 1.20907 0.86654 0.89193 0.97780 0.91911 1.22056 1.02461 1.01961 0.94310 1.23448 1.00037 0.93799 0.95481 1.22198 0.95766 0.85716 0.92285 1.46433 1.58599 1.14508 1.17545 1.19473 1.25904 0.93868 0.97202 0.89714 1.25617 1.00497 1.00788 0.99082 1.70003 1.37818 1.31603 1.20977 0.85090 0.76563 0.79165 0.78600 1.21725 1.21951 1.18966 1.22688 0.94892 0.95457 0.86478 1.43173 1.04840 1.11211 1.55282 0.72096 0.88299 0.88125 0.87561 0.80116 0.75696 0.90598 0.90478 0.93109 0.87408 0.98051 0.93870 0.94339 0.91525 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.25 4.47 8.12 138.20 1.12 5.59 16 3 N -0.53 -13.23 11.20 -187.39 -2.10 -15.33 16 4 C 0.06 1.48 11.66 84.10 0.98 2.46 16 5 C -0.10 -2.49 7.08 40.01 0.28 -2.20 16 6 C 0.60 17.41 7.75 86.47 0.67 18.08 16 7 O -0.57 -20.89 16.57 -4.29 -0.07 -20.96 16 8 N -0.71 -17.73 5.07 -446.44 -2.26 -19.99 16 9 C 0.16 4.57 2.38 44.99 0.11 4.68 16 10 H 0.06 2.20 7.41 -2.39 -0.02 2.19 16 11 C -0.15 -3.47 9.31 71.98 0.67 -2.80 16 12 C -0.11 -3.55 3.47 -10.13 -0.04 -3.59 16 13 C 0.17 7.71 7.08 86.45 0.61 8.32 16 14 N -0.64 -32.52 3.70 -716.07 -2.65 -35.17 16 15 C -0.24 -13.17 10.70 84.03 0.90 -12.27 16 16 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 17 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 18 N -0.95 -57.53 11.39 21.65 0.25 -57.28 16 19 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 C 0.13 4.87 7.64 86.49 0.66 5.53 16 24 N -0.54 -9.34 6.07 -176.10 -1.07 -10.41 16 25 H 0.44 4.58 8.32 -92.71 -0.77 3.81 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 30 H 0.41 7.78 7.85 -92.70 -0.73 7.05 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.69 7.52 -2.39 -0.02 1.67 16 33 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.00 0.09 7.99 -2.39 -0.02 0.07 16 36 H 0.04 2.22 7.16 -2.38 -0.02 2.21 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -77.31 331.61 0.88 -76.43 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.42 Total: 14.65 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 7.19 Total: 20.61 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -7.84 Total: -138.18 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.07 Total: -20.96 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.31 0.88 -76.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969398218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.507 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds