Wall clock time and date at job start Mon Mar 30 2020 23:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30862 * 125.42028 * 2 1 4 4 C 1.33321 * 109.68119 * 179.78701 * 3 2 1 5 5 C 1.36664 * 107.78994 * 0.37859 * 4 3 2 6 6 C 1.46760 * 126.84221 * 179.89572 * 5 4 3 7 7 O 1.21680 * 120.00185 * 359.68662 * 6 5 4 8 8 N 1.34780 * 119.99661 * 179.68942 * 6 5 4 9 9 C 1.46496 * 119.99734 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47552 * 324.99740 * 9 8 6 11 11 C 1.53008 * 109.47421 * 84.99427 * 9 8 6 12 12 C 1.52998 * 109.46930 * 204.99506 * 9 8 6 13 13 C 1.53504 * 114.20785 * 179.97438 * 12 9 8 14 14 N 1.47069 * 87.98363 * 220.34571 * 13 12 9 15 15 C 1.36941 * 136.05552 * 207.07801 * 14 13 12 16 16 H 1.08000 * 119.99396 * 7.56018 * 15 14 13 17 17 C 1.38806 * 119.99993 * 187.55101 * 15 14 13 18 18 N 1.31621 * 119.99759 * 174.37714 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 354.38427 * 17 15 14 20 20 H 1.48501 * 109.46963 * 174.94900 * 19 17 15 21 21 H 1.48498 * 109.47184 * 294.94894 * 19 17 15 22 22 H 1.48507 * 109.47082 * 54.95224 * 19 17 15 23 23 C 1.47064 * 87.88742 * 27.34488 * 14 13 12 24 24 N 1.34502 * 125.41602 * 180.02562 * 2 1 3 25 25 H 0.96998 * 126.47203 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47028 * 269.97502 * 1 2 3 27 27 H 1.09005 * 109.47271 * 29.96961 * 1 2 3 28 28 H 1.08994 * 109.47561 * 149.97474 * 1 2 3 29 29 H 1.08009 * 126.09950 * 180.27709 * 4 3 2 30 30 H 0.96996 * 120.00127 * 359.97438 * 8 6 5 31 31 H 1.08994 * 109.46942 * 300.00242 * 11 9 8 32 32 H 1.09004 * 109.46240 * 60.00200 * 11 9 8 33 33 H 1.08998 * 109.47419 * 179.97438 * 11 9 8 34 34 H 1.09002 * 113.41395 * 313.19707 * 12 9 8 35 35 H 1.08997 * 113.46758 * 105.56146 * 13 12 9 36 36 H 1.09000 * 113.51898 * 335.13170 * 13 12 9 37 37 H 0.96993 * 120.00423 * 354.88754 * 18 17 15 38 38 H 1.08993 * 113.47012 * 87.43421 * 23 14 13 39 39 H 1.09000 * 113.46758 * 217.87997 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 3.5975 -0.6610 -0.0008 6 6 4.8028 -1.4983 -0.0007 7 8 5.9037 -0.9801 -0.0010 8 7 4.6901 -2.8414 -0.0003 9 6 5.8932 -3.6773 0.0005 10 1 6.6721 -3.1936 -0.5889 11 6 6.3834 -3.8645 1.4377 12 6 5.5662 -5.0422 -0.6087 13 6 6.7572 -6.0093 -0.6621 14 7 6.2931 -6.4250 -1.9943 15 6 6.3867 -7.5545 -2.7629 16 1 6.8066 -8.4580 -2.3460 17 6 5.9418 -7.5382 -4.0776 18 7 6.1319 -8.5870 -4.8497 19 14 5.0734 -6.0277 -4.7510 20 1 4.8098 -6.2134 -6.2006 21 1 3.7869 -5.8357 -4.0346 22 1 5.9332 -4.8331 -4.5533 23 6 5.6902 -5.0917 -2.1405 24 7 2.2864 -1.0961 -0.0005 25 1 1.9848 -2.0181 -0.0013 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8903 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 4.3978 1.3721 0.0100 30 1 3.8125 -3.2545 0.0003 31 1 6.6163 -2.8922 1.8717 32 1 5.6045 -4.3483 2.0271 33 1 7.2783 -4.4868 1.4383 34 1 4.6495 -5.4829 -0.2169 35 1 6.7054 -6.8031 0.0830 36 1 7.7247 -5.5074 -0.6765 37 1 6.6472 -9.3417 -4.5245 38 1 6.3759 -4.3471 -2.5447 39 1 4.7293 -5.1038 -2.6550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969398219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:10 Heat of formation + Delta-G solvation = 76.717704 kcal Electronic energy + Delta-G solvation = -21405.803517 eV Core-core repulsion = 18158.378745 eV Total energy + Delta-G solvation = -3247.424772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48126 -39.85884 -38.51799 -35.20008 -33.15576 -32.48480 -32.20008 -30.66764 -27.85626 -27.63851 -25.50316 -24.23802 -22.94605 -21.50539 -20.73611 -20.61362 -19.69645 -18.54726 -17.53565 -16.43171 -16.24186 -15.94408 -15.39552 -14.82081 -14.57237 -14.23594 -13.93184 -13.84867 -13.59735 -13.23218 -13.16971 -12.93729 -12.83889 -12.37943 -11.99199 -11.90843 -11.60169 -11.01880 -10.74919 -10.66134 -10.47070 -10.42920 -10.37105 -10.03723 -9.39190 -9.19553 -9.08147 -8.95981 -8.71694 -7.22408 -6.34565 -3.28977 1.05961 2.52565 2.56063 2.98739 3.20409 3.32973 3.40184 3.59559 4.02184 4.49682 4.54207 4.59179 4.73281 4.82950 4.96305 5.02880 5.06366 5.24174 5.34565 5.41361 5.46070 5.48844 5.52976 5.65189 5.77715 5.92922 6.06368 6.15728 6.19470 6.22221 6.28085 6.31438 6.45564 6.82552 6.86163 7.05943 7.29514 7.64380 8.01853 8.18580 8.92409 9.44558 10.30784 11.15383 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.004382 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.641845 B = 6388.261670 C = 7241.888772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.237 3.763 3 N -0.497 5.497 4 C 0.070 3.930 5 C -0.088 4.088 6 C 0.595 3.405 7 O -0.525 6.525 8 N -0.720 5.720 9 C 0.153 3.847 10 H 0.094 0.906 11 C -0.158 4.158 12 C -0.141 4.141 13 C 0.135 3.865 14 N -0.629 5.629 15 C -0.305 4.305 16 H 0.084 0.916 17 C -0.024 4.024 18 N -0.934 5.934 19 Si 1.071 2.929 20 H -0.294 1.294 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.102 3.898 24 N -0.552 5.552 25 H 0.422 0.578 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.184 0.816 30 H 0.393 0.607 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 15.146 13.518 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.027 4.027 3 N -0.217 5.217 4 C -0.084 4.084 5 C -0.203 4.203 6 C 0.381 3.619 7 O -0.401 6.401 8 N -0.370 5.370 9 C 0.048 3.952 10 H 0.112 0.888 11 C -0.217 4.217 12 C -0.161 4.161 13 C 0.008 3.992 14 N -0.356 5.356 15 C -0.431 4.431 16 H 0.101 0.899 17 C -0.223 4.223 18 N -0.576 5.576 19 Si 0.903 3.097 20 H -0.221 1.221 21 H -0.224 1.224 22 H -0.214 1.214 23 C -0.023 4.023 24 N -0.157 5.157 25 H 0.260 0.740 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.201 0.799 30 H 0.226 0.774 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.739 16.656 12.008 23.172 hybrid contribution 0.620 -2.174 1.312 2.614 sum -10.119 14.482 13.320 22.126 Atomic orbital electron populations 1.20316 0.84215 1.04703 1.04054 1.23480 0.95914 0.81555 1.01756 1.70211 1.02163 1.28209 1.21098 1.22669 0.94730 0.91278 0.99685 1.21248 0.83706 0.96112 1.19267 1.16842 0.86940 0.81607 0.76551 1.90855 1.25768 1.73197 1.50273 1.46030 1.10215 1.05543 1.75172 1.21084 0.86821 0.90140 0.97148 0.88828 1.22125 1.01677 1.02046 0.95827 1.23576 1.01167 0.93732 0.97600 1.22252 0.93973 0.93878 0.89111 1.45973 1.63235 1.09429 1.17004 1.20171 1.41630 0.87520 0.93828 0.89876 1.25707 1.01153 1.03837 0.91598 1.70909 1.42040 1.07396 1.37216 0.83707 0.75816 0.74831 0.75315 1.22136 1.22373 1.21385 1.22843 0.97344 0.89026 0.93102 1.43265 1.06145 1.10288 1.56043 0.73957 0.89587 0.88611 0.90283 0.79863 0.77398 0.92357 0.92620 0.91020 0.88509 0.93448 0.94176 0.92869 0.93642 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.24 2.13 8.12 -155.61 -1.26 0.87 16 3 N -0.50 -5.91 11.20 -10.58 -0.12 -6.03 16 4 C 0.07 0.85 11.66 -17.47 -0.20 0.65 16 5 C -0.09 -1.01 7.08 -82.14 -0.58 -1.59 16 6 C 0.59 7.91 7.75 -12.82 -0.10 7.81 16 7 O -0.53 -8.73 16.57 5.21 0.09 -8.64 16 8 N -0.72 -8.36 5.07 -55.09 -0.28 -8.64 16 9 C 0.15 2.04 2.47 -67.93 -0.17 1.87 16 10 H 0.09 1.45 7.32 -51.93 -0.38 1.07 16 11 C -0.16 -1.84 9.29 37.16 0.35 -1.50 16 12 C -0.14 -2.20 3.67 -89.96 -0.33 -2.53 16 13 C 0.13 2.51 7.33 -8.50 -0.06 2.45 16 14 N -0.63 -15.20 3.69 -184.57 -0.68 -15.88 16 15 C -0.31 -8.77 11.08 -15.06 -0.17 -8.94 16 16 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 17 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 18 N -0.93 -29.48 13.70 55.49 0.76 -28.72 16 19 Si 1.07 26.83 25.16 -169.99 -4.28 22.56 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.30 -6.87 6.51 56.52 0.37 -6.51 16 22 H -0.29 -6.83 6.21 56.52 0.35 -6.48 16 23 C 0.10 2.10 5.27 -8.36 -0.04 2.05 16 24 N -0.55 -4.64 6.07 -7.02 -0.04 -4.69 16 25 H 0.42 2.22 8.32 -40.82 -0.34 1.88 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.18 2.04 8.06 -52.48 -0.42 1.62 16 30 H 0.39 3.51 7.85 -40.82 -0.32 3.18 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 38 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 39 H 0.05 1.06 4.73 -51.93 -0.25 0.81 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -36.15 324.10 -7.48 -43.63 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.52 Total: 1.19 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.29 Total: 0.35 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.36 Total: -63.96 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.28 Total: 22.56 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.15 -7.48 -43.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969398219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.346 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds