Wall clock time and date at job start Mon Mar 30 2020 23:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30862 * 125.42028 * 2 1 4 4 C 1.33321 * 109.68119 * 179.78701 * 3 2 1 5 5 C 1.36664 * 107.78994 * 0.37859 * 4 3 2 6 6 C 1.46760 * 126.84221 * 179.89572 * 5 4 3 7 7 O 1.21680 * 120.00185 * 359.68662 * 6 5 4 8 8 N 1.34780 * 119.99661 * 179.68942 * 6 5 4 9 9 C 1.46496 * 119.99734 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47552 * 324.99740 * 9 8 6 11 11 C 1.53008 * 109.47421 * 84.99427 * 9 8 6 12 12 C 1.52998 * 109.46930 * 204.99506 * 9 8 6 13 13 C 1.53504 * 114.20785 * 179.97438 * 12 9 8 14 14 N 1.47069 * 87.98363 * 220.34571 * 13 12 9 15 15 C 1.36941 * 136.05552 * 207.07801 * 14 13 12 16 16 H 1.08000 * 119.99396 * 7.56018 * 15 14 13 17 17 C 1.38806 * 119.99993 * 187.55101 * 15 14 13 18 18 N 1.31621 * 119.99759 * 174.37714 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 354.38427 * 17 15 14 20 20 H 1.48501 * 109.46963 * 174.94900 * 19 17 15 21 21 H 1.48498 * 109.47184 * 294.94894 * 19 17 15 22 22 H 1.48507 * 109.47082 * 54.95224 * 19 17 15 23 23 C 1.47064 * 87.88742 * 27.34488 * 14 13 12 24 24 N 1.34502 * 125.41602 * 180.02562 * 2 1 3 25 25 H 0.96998 * 126.47203 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47028 * 269.97502 * 1 2 3 27 27 H 1.09005 * 109.47271 * 29.96961 * 1 2 3 28 28 H 1.08994 * 109.47561 * 149.97474 * 1 2 3 29 29 H 1.08009 * 126.09950 * 180.27709 * 4 3 2 30 30 H 0.96996 * 120.00127 * 359.97438 * 8 6 5 31 31 H 1.08994 * 109.46942 * 300.00242 * 11 9 8 32 32 H 1.09004 * 109.46240 * 60.00200 * 11 9 8 33 33 H 1.08998 * 109.47419 * 179.97438 * 11 9 8 34 34 H 1.09002 * 113.41395 * 313.19707 * 12 9 8 35 35 H 1.08997 * 113.46758 * 105.56146 * 13 12 9 36 36 H 1.09000 * 113.51898 * 335.13170 * 13 12 9 37 37 H 0.96993 * 120.00423 * 354.88754 * 18 17 15 38 38 H 1.08993 * 113.47012 * 87.43421 * 23 14 13 39 39 H 1.09000 * 113.46758 * 217.87997 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 3.5975 -0.6610 -0.0008 6 6 4.8028 -1.4983 -0.0007 7 8 5.9037 -0.9801 -0.0010 8 7 4.6901 -2.8414 -0.0003 9 6 5.8932 -3.6773 0.0005 10 1 6.6721 -3.1936 -0.5889 11 6 6.3834 -3.8645 1.4377 12 6 5.5662 -5.0422 -0.6087 13 6 6.7572 -6.0093 -0.6621 14 7 6.2931 -6.4250 -1.9943 15 6 6.3867 -7.5545 -2.7629 16 1 6.8066 -8.4580 -2.3460 17 6 5.9418 -7.5382 -4.0776 18 7 6.1319 -8.5870 -4.8497 19 14 5.0734 -6.0277 -4.7510 20 1 4.8098 -6.2134 -6.2006 21 1 3.7869 -5.8357 -4.0346 22 1 5.9332 -4.8331 -4.5533 23 6 5.6902 -5.0917 -2.1405 24 7 2.2864 -1.0961 -0.0005 25 1 1.9848 -2.0181 -0.0013 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8903 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 4.3978 1.3721 0.0100 30 1 3.8125 -3.2545 0.0003 31 1 6.6163 -2.8922 1.8717 32 1 5.6045 -4.3483 2.0271 33 1 7.2783 -4.4868 1.4383 34 1 4.6495 -5.4829 -0.2169 35 1 6.7054 -6.8031 0.0830 36 1 7.7247 -5.5074 -0.6765 37 1 6.6472 -9.3417 -4.5245 38 1 6.3759 -4.3471 -2.5447 39 1 4.7293 -5.1038 -2.6550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969398219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:09 Heat of formation + Delta-G solvation = 48.697332 kcal Electronic energy + Delta-G solvation = -21407.018571 eV Core-core repulsion = 18158.378745 eV Total energy + Delta-G solvation = -3248.639827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.25578 -41.08042 -39.88443 -36.42632 -34.62367 -33.85041 -32.96113 -31.76806 -29.54902 -28.35270 -27.05822 -25.56328 -24.17608 -22.64076 -21.75719 -21.62533 -20.99628 -19.62224 -19.50493 -17.60734 -17.27385 -16.95206 -16.74765 -15.97568 -15.86635 -15.54845 -15.20380 -15.07926 -14.86834 -14.40177 -14.25463 -13.70736 -13.47553 -13.30728 -13.24785 -13.21658 -13.16216 -12.57445 -12.39126 -12.15622 -11.76048 -11.58033 -11.33648 -11.23767 -11.13106 -11.05025 -10.87757 -10.25584 -9.52687 -9.26172 -8.64583 -5.51068 0.21547 1.32424 1.44155 1.62825 1.74701 1.79568 2.06317 2.26069 2.49957 2.94837 3.15074 3.37252 3.44464 3.77612 3.84260 4.08795 4.16088 4.29702 4.34244 4.42184 4.54435 4.59870 4.63610 4.65941 4.76664 4.77481 4.83084 4.86441 5.00750 5.13808 5.16498 5.26585 5.34704 5.45494 5.49525 5.92331 6.25477 6.40671 6.66972 6.87648 7.05038 7.29476 8.24226 8.87080 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.004382 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.641845 B = 6388.261670 C = 7241.888772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.248 3.752 3 N -0.530 5.530 4 C 0.056 3.944 5 C -0.099 4.099 6 C 0.598 3.402 7 O -0.565 6.565 8 N -0.708 5.708 9 C 0.161 3.839 10 H 0.073 0.927 11 C -0.152 4.152 12 C -0.102 4.102 13 C 0.130 3.870 14 N -0.662 5.662 15 C -0.292 4.292 16 H 0.053 0.947 17 C -0.084 4.084 18 N -0.972 5.972 19 Si 1.108 2.892 20 H -0.305 1.305 21 H -0.263 1.263 22 H -0.271 1.271 23 C 0.091 3.909 24 N -0.538 5.538 25 H 0.438 0.562 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.181 0.819 30 H 0.409 0.591 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.247 0.753 38 H 0.042 0.958 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.930 16.497 15.212 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 N -0.251 5.251 4 C -0.098 4.098 5 C -0.215 4.215 6 C 0.385 3.615 7 O -0.444 6.444 8 N -0.359 5.359 9 C 0.056 3.944 10 H 0.091 0.909 11 C -0.210 4.210 12 C -0.121 4.121 13 C 0.004 3.996 14 N -0.390 5.390 15 C -0.420 4.420 16 H 0.071 0.929 17 C -0.276 4.276 18 N -0.617 5.617 19 Si 0.934 3.066 20 H -0.233 1.233 21 H -0.189 1.189 22 H -0.197 1.197 23 C -0.033 4.033 24 N -0.145 5.145 25 H 0.280 0.720 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.198 0.802 30 H 0.245 0.755 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.135 17.993 13.771 26.190 hybrid contribution 1.375 -2.592 0.886 3.065 sum -11.760 15.401 14.657 24.297 Atomic orbital electron populations 1.20549 0.81062 1.06014 1.05579 1.24275 0.97410 0.80908 0.99005 1.70221 1.02231 1.29858 1.22807 1.22802 0.95205 0.91876 0.99951 1.20894 0.84363 0.95605 1.20679 1.16976 0.86865 0.81899 0.75764 1.90836 1.27388 1.73947 1.52190 1.45827 1.10549 1.04953 1.74536 1.20847 0.86962 0.88690 0.97921 0.90920 1.22064 1.02458 1.02078 0.94430 1.23261 1.00661 0.94214 0.93999 1.22488 0.95593 0.94879 0.86603 1.46112 1.64627 1.09607 1.18699 1.20066 1.39246 0.88459 0.94180 0.92927 1.27007 1.02475 1.05676 0.92465 1.71007 1.44174 1.08212 1.38304 0.83270 0.76601 0.72332 0.74366 1.23347 1.18943 1.19703 1.23045 0.96795 0.86804 0.96689 1.43165 1.04804 1.11203 1.55333 0.71999 0.87811 0.88475 0.87785 0.80184 0.75465 0.92912 0.90616 0.90679 0.86118 0.92353 0.93262 0.94388 0.94044 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.51 71.23 0.75 0.32 16 2 C 0.25 3.77 8.12 138.19 1.12 4.89 16 3 N -0.53 -11.86 11.20 -187.38 -2.10 -13.96 16 4 C 0.06 1.32 11.66 84.10 0.98 2.30 16 5 C -0.10 -2.11 7.08 40.01 0.28 -1.83 16 6 C 0.60 14.82 7.75 86.47 0.67 15.49 16 7 O -0.56 -18.41 16.57 -4.28 -0.07 -18.48 16 8 N -0.71 -14.24 5.07 -446.43 -2.26 -16.50 16 9 C 0.16 3.83 2.47 44.99 0.11 3.94 16 10 H 0.07 2.12 7.32 -2.39 -0.02 2.10 16 11 C -0.15 -3.05 9.29 71.98 0.67 -2.38 16 12 C -0.10 -2.82 3.67 -10.37 -0.04 -2.86 16 13 C 0.13 4.53 7.33 83.18 0.61 5.14 16 14 N -0.66 -31.12 3.69 -737.86 -2.72 -33.85 16 15 C -0.29 -16.92 11.08 84.03 0.93 -15.99 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 17 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 18 N -0.97 -63.10 13.70 21.65 0.30 -62.80 16 19 Si 1.11 53.50 25.16 68.60 1.73 55.23 16 20 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 21 H -0.26 -11.21 6.51 99.48 0.65 -10.56 16 22 H -0.27 -12.23 6.21 99.48 0.62 -11.62 16 23 C 0.09 3.51 5.27 83.27 0.44 3.94 16 24 N -0.54 -7.38 6.07 -176.11 -1.07 -8.45 16 25 H 0.44 2.81 8.32 -92.71 -0.77 2.04 16 26 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.41 5.56 7.85 -92.71 -0.73 4.83 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 33 H 0.07 1.47 7.48 -2.39 -0.02 1.45 16 34 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 38 H 0.04 1.65 7.44 -2.39 -0.02 1.64 16 39 H 0.05 1.94 4.73 -2.39 -0.01 1.93 16 Total: -1.00 -80.98 324.10 0.18 -80.80 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -0.60 Total: 9.64 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.99 Total: 8.37 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -7.86 Total: -135.56 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.07 Total: -18.48 kcal Atomic # 14 Polarization: 53.50 SS G_CDS: 1.73 Total: 55.23 kcal Total: -80.98 0.18 -80.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969398219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.495 kcal (2) G-P(sol) polarization free energy of solvation -80.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds