Wall clock time and date at job start Tue Mar 31 2020 00:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47351 * 2 1 4 4 N 1.33319 * 126.10931 * 270.00235 * 3 2 1 5 5 C 1.30861 * 109.68357 * 179.97438 * 4 3 2 6 6 N 1.34497 * 109.16369 * 359.76246 * 5 4 3 7 7 H 0.97000 * 126.47043 * 180.25050 * 6 5 4 8 8 C 1.36661 * 126.10480 * 89.99641 * 3 2 1 9 9 C 1.46766 * 126.84404 * 359.97361 * 8 3 2 10 10 O 1.21687 * 119.99994 * 359.97438 * 9 8 3 11 11 N 1.34774 * 120.00175 * 179.97438 * 9 8 3 12 12 C 1.47031 * 125.64691 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26879 * 181.01415 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 H 1.08999 * 111.00338 * 82.57390 * 14 13 12 16 16 N 1.46503 * 110.99889 * 206.42102 * 14 13 12 17 17 C 1.36940 * 119.99702 * 204.99896 * 16 14 13 18 18 H 1.08001 * 120.00403 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00018 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47230 * 119.99768 * 21 19 17 24 24 H 1.48506 * 109.47173 * 239.99722 * 21 19 17 25 25 C 1.47422 * 125.65171 * 179.97438 * 11 9 8 26 26 H 1.09004 * 109.47429 * 59.99725 * 1 2 3 27 27 H 1.09002 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47304 * 299.99804 * 1 2 3 29 29 H 1.09004 * 109.47456 * 240.00729 * 2 1 3 30 30 H 1.08998 * 109.47450 * 120.00718 * 2 1 3 31 31 H 1.08004 * 125.41508 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.88059 * 61.59780 * 12 11 9 33 33 H 1.08994 * 109.87878 * 300.43060 * 12 11 9 34 34 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 35 35 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 36 36 H 0.96997 * 120.00424 * 25.00514 * 16 14 13 37 37 H 0.96992 * 120.00284 * 180.02562 * 20 19 17 38 38 H 1.09000 * 110.36378 * 37.07938 * 25 11 9 39 39 H 1.08998 * 110.37024 * 274.75654 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2942 2.1616 -1.0771 5 6 2.7122 3.3451 -0.7070 6 7 2.7283 3.4076 0.6364 7 1 2.9925 4.1698 1.1750 8 6 2.3007 2.1801 1.1041 9 6 2.1567 1.7745 2.5073 10 8 1.7604 0.6568 2.7800 11 7 2.4633 2.6401 3.4938 12 6 2.9501 4.0148 3.3070 13 6 3.1890 4.6109 4.7103 14 6 3.3627 3.3505 5.5983 15 1 4.3825 2.9701 5.5415 16 7 2.9852 3.6298 6.9860 17 6 3.5156 2.8825 8.0035 18 1 4.2126 2.0874 7.7831 19 6 3.1576 3.1468 9.3184 20 7 2.3086 4.1161 9.5871 21 14 3.8817 2.1279 10.7064 22 1 4.8035 1.1087 10.1436 23 1 4.6299 3.0147 11.6332 24 1 2.7868 1.4499 11.4460 25 6 2.3651 2.3657 4.9389 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.9947 4.1460 -1.3743 32 1 2.2022 4.6040 2.7764 33 1 3.8838 4.0041 2.7449 34 1 4.0938 5.2187 4.7222 35 1 2.3282 5.1971 5.0320 36 1 2.3595 4.3441 7.1840 37 1 2.0587 4.3010 10.5059 38 1 2.6533 1.3359 5.1499 39 1 1.3524 2.5573 5.2936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970591891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:22 Heat of formation + Delta-G solvation = 37.666693 kcal Electronic energy + Delta-G solvation = -21584.960399 eV Core-core repulsion = 18335.842248 eV Total energy + Delta-G solvation = -3249.118151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40854 -39.55399 -37.41328 -34.64855 -33.94839 -32.30779 -31.49800 -29.90014 -29.18636 -27.64113 -24.82329 -23.64018 -23.08961 -22.03675 -21.28518 -20.15591 -19.40507 -17.89826 -17.22622 -16.47964 -16.26086 -15.56080 -15.23704 -14.80690 -14.46693 -14.07691 -13.88930 -13.62771 -13.49269 -13.26581 -12.92330 -12.61606 -12.37754 -12.34530 -11.72116 -11.45079 -11.24845 -10.99245 -10.93562 -10.84024 -10.46061 -10.44603 -10.16219 -10.11390 -9.90217 -9.75464 -9.11202 -8.77341 -8.41781 -7.17535 -5.91625 -3.23118 1.22095 2.70447 2.72088 3.08022 3.31773 3.36617 3.43474 3.44986 4.25112 4.46379 4.49867 4.65026 4.82269 4.89416 4.97226 5.05397 5.29240 5.44323 5.48490 5.53305 5.56839 5.63548 5.66742 5.76311 5.96790 6.01147 6.09420 6.19840 6.22104 6.26070 6.37375 6.46142 6.49887 6.73603 7.02505 7.53610 7.59216 7.77515 8.18357 8.25663 9.37937 9.89163 10.23991 11.30298 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.003725 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.505447 B = 7515.315448 C = 8115.334937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.095 3.905 4 N -0.498 5.498 5 C 0.209 3.791 6 N -0.558 5.558 7 H 0.423 0.577 8 C -0.080 4.080 9 C 0.603 3.397 10 O -0.523 6.523 11 N -0.613 5.613 12 C 0.093 3.907 13 C -0.140 4.140 14 C 0.173 3.827 15 H 0.069 0.931 16 N -0.710 5.710 17 C -0.251 4.251 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.082 3.918 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.214 0.786 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 1.585 -19.470 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.039 4.039 4 N -0.218 5.218 5 C -0.075 4.075 6 N -0.167 5.167 7 H 0.267 0.733 8 C -0.196 4.196 9 C 0.391 3.609 10 O -0.399 6.399 11 N -0.347 5.347 12 C -0.031 4.031 13 C -0.179 4.179 14 C 0.060 3.940 15 H 0.087 0.913 16 N -0.349 5.349 17 C -0.382 4.382 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.042 4.042 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.230 0.770 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.641 0.559 -19.985 20.003 hybrid contribution 0.389 0.723 1.802 1.980 sum 1.030 1.282 -18.183 18.257 Atomic orbital electron populations 1.21611 0.94442 1.01734 1.01722 1.20047 0.96203 0.88770 1.03638 1.21027 0.99251 0.97073 0.86562 1.70104 1.18423 1.02720 1.30563 1.25117 1.02063 0.98006 0.82325 1.43939 1.50388 1.13510 1.08890 0.73322 1.21025 1.15402 0.88017 0.95164 1.16510 0.78150 0.84306 0.81960 1.90823 1.47069 1.19470 1.82572 1.48458 1.65085 1.13286 1.07893 1.22164 0.97707 0.83341 0.99862 1.22945 1.03075 0.99351 0.92479 1.21306 0.96105 0.91117 0.85444 0.91277 1.42303 1.53591 1.40259 0.98778 1.19314 1.21187 1.11673 0.86046 0.90791 1.24778 0.99451 0.98692 0.97431 1.69664 1.36714 1.32289 1.18977 0.86093 0.78313 0.79344 0.82267 1.20365 1.21715 1.21652 1.23497 1.01999 1.02390 0.76351 0.93018 0.92208 0.92552 0.90754 0.88748 0.76981 0.92080 0.91970 0.89900 0.90109 0.77818 0.93306 0.90610 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 37.15 0.37 -1.27 16 2 C -0.05 -0.62 5.93 -27.89 -0.17 -0.79 16 3 C 0.10 1.32 6.40 -82.52 -0.53 0.79 16 4 N -0.50 -6.35 11.20 -10.64 -0.12 -6.47 16 5 C 0.21 1.91 13.01 -90.57 -1.18 0.73 16 6 N -0.56 -5.42 5.67 -10.79 -0.06 -5.48 16 7 H 0.42 3.01 5.14 -40.82 -0.21 2.80 16 8 C -0.08 -1.10 6.89 -82.14 -0.57 -1.66 16 9 C 0.60 9.75 7.82 -12.82 -0.10 9.65 16 10 O -0.52 -9.94 15.07 5.20 0.08 -9.86 16 11 N -0.61 -9.28 3.33 -172.03 -0.57 -9.85 16 12 C 0.09 1.05 5.12 -3.06 -0.02 1.03 16 13 C -0.14 -1.87 6.60 -24.90 -0.16 -2.03 16 14 C 0.17 3.12 3.71 -65.78 -0.24 2.88 16 15 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 16 N -0.71 -16.50 5.24 -51.35 -0.27 -16.76 16 17 C -0.25 -6.64 9.96 -15.06 -0.15 -6.79 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 21 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.08 1.48 6.60 -2.53 -0.02 1.46 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.35 6.48 -51.93 -0.34 1.01 16 31 H 0.21 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.06 0.56 7.24 -51.93 -0.38 0.19 16 33 H 0.06 0.57 7.14 -51.93 -0.37 0.20 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 36 H 0.39 9.51 7.77 -40.82 -0.32 9.19 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -32.46 322.83 -8.60 -41.07 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.37 Total: 8.26 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.86 Total: 3.73 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.30 Total: -64.74 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.46 -8.60 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970591891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.732 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds