Wall clock time and date at job start Tue Mar 31 2020 00:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47351 * 2 1 4 4 N 1.33319 * 126.10931 * 270.00235 * 3 2 1 5 5 C 1.30861 * 109.68357 * 179.97438 * 4 3 2 6 6 N 1.34497 * 109.16369 * 359.76246 * 5 4 3 7 7 H 0.97000 * 126.47043 * 180.25050 * 6 5 4 8 8 C 1.36661 * 126.10480 * 89.99641 * 3 2 1 9 9 C 1.46766 * 126.84404 * 359.97361 * 8 3 2 10 10 O 1.21687 * 119.99994 * 359.97438 * 9 8 3 11 11 N 1.34774 * 120.00175 * 179.97438 * 9 8 3 12 12 C 1.47031 * 125.64691 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26879 * 181.01415 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 H 1.08999 * 111.00338 * 82.57390 * 14 13 12 16 16 N 1.46503 * 110.99889 * 206.42102 * 14 13 12 17 17 C 1.36940 * 119.99702 * 204.99896 * 16 14 13 18 18 H 1.08001 * 120.00403 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00018 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47230 * 119.99768 * 21 19 17 24 24 H 1.48506 * 109.47173 * 239.99722 * 21 19 17 25 25 C 1.47422 * 125.65171 * 179.97438 * 11 9 8 26 26 H 1.09004 * 109.47429 * 59.99725 * 1 2 3 27 27 H 1.09002 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47304 * 299.99804 * 1 2 3 29 29 H 1.09004 * 109.47456 * 240.00729 * 2 1 3 30 30 H 1.08998 * 109.47450 * 120.00718 * 2 1 3 31 31 H 1.08004 * 125.41508 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.88059 * 61.59780 * 12 11 9 33 33 H 1.08994 * 109.87878 * 300.43060 * 12 11 9 34 34 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 35 35 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 36 36 H 0.96997 * 120.00424 * 25.00514 * 16 14 13 37 37 H 0.96992 * 120.00284 * 180.02562 * 20 19 17 38 38 H 1.09000 * 110.36378 * 37.07938 * 25 11 9 39 39 H 1.08998 * 110.37024 * 274.75654 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2942 2.1616 -1.0771 5 6 2.7122 3.3451 -0.7070 6 7 2.7283 3.4076 0.6364 7 1 2.9925 4.1698 1.1750 8 6 2.3007 2.1801 1.1041 9 6 2.1567 1.7745 2.5073 10 8 1.7604 0.6568 2.7800 11 7 2.4633 2.6401 3.4938 12 6 2.9501 4.0148 3.3070 13 6 3.1890 4.6109 4.7103 14 6 3.3627 3.3505 5.5983 15 1 4.3825 2.9701 5.5415 16 7 2.9852 3.6298 6.9860 17 6 3.5156 2.8825 8.0035 18 1 4.2126 2.0874 7.7831 19 6 3.1576 3.1468 9.3184 20 7 2.3086 4.1161 9.5871 21 14 3.8817 2.1279 10.7064 22 1 4.8035 1.1087 10.1436 23 1 4.6299 3.0147 11.6332 24 1 2.7868 1.4499 11.4460 25 6 2.3651 2.3657 4.9389 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.9947 4.1460 -1.3743 32 1 2.2022 4.6040 2.7764 33 1 3.8838 4.0041 2.7449 34 1 4.0938 5.2187 4.7222 35 1 2.3282 5.1971 5.0320 36 1 2.3595 4.3441 7.1840 37 1 2.0587 4.3010 10.5059 38 1 2.6533 1.3359 5.1499 39 1 1.3524 2.5573 5.2936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970591891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:21 Heat of formation + Delta-G solvation = 15.757683 kcal Electronic energy + Delta-G solvation = -21585.910445 eV Core-core repulsion = 18335.842248 eV Total energy + Delta-G solvation = -3250.068197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.30525 -40.79161 -38.74215 -36.15273 -35.14091 -33.59755 -32.86410 -31.32067 -30.21053 -29.07087 -26.26586 -25.10936 -24.17635 -23.01104 -22.40899 -21.54905 -20.36698 -19.46524 -18.65023 -17.60948 -17.49222 -16.69111 -16.58348 -16.00325 -15.72571 -15.48182 -15.12604 -14.91155 -14.77736 -14.38289 -14.35914 -13.90104 -13.80050 -13.32766 -13.17617 -12.94098 -12.64799 -12.43654 -12.39252 -12.10724 -12.00695 -11.82390 -11.69279 -11.48039 -11.07251 -11.02039 -10.91275 -9.95033 -9.48422 -9.11154 -8.00343 -5.30412 0.23245 1.46216 1.48175 1.57029 1.69177 1.83531 2.08753 2.20172 2.53504 3.29203 3.41997 3.50828 3.56361 3.83852 3.94298 4.06008 4.11060 4.20380 4.25234 4.42901 4.46772 4.49137 4.54530 4.66681 4.75315 4.77249 4.89388 5.04310 5.11515 5.14107 5.23421 5.27886 5.30721 5.49807 5.51013 6.21644 6.32918 6.36834 6.88298 6.97534 7.29409 7.99600 8.23568 9.22424 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.003725 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.505447 B = 7515.315448 C = 8115.334937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.087 3.913 4 N -0.530 5.530 5 C 0.240 3.760 6 N -0.546 5.546 7 H 0.437 0.563 8 C -0.103 4.103 9 C 0.598 3.402 10 O -0.565 6.565 11 N -0.614 5.614 12 C 0.094 3.906 13 C -0.126 4.126 14 C 0.166 3.834 15 H 0.067 0.933 16 N -0.721 5.721 17 C -0.249 4.249 18 H 0.075 0.925 19 C -0.066 4.066 20 N -0.964 5.964 21 Si 0.969 3.031 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.295 1.295 25 C 0.094 3.906 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.379 0.621 37 H 0.253 0.747 38 H 0.048 0.952 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 3.088 -21.948 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.048 4.048 4 N -0.250 5.250 5 C -0.044 4.044 6 N -0.156 5.156 7 H 0.283 0.717 8 C -0.219 4.219 9 C 0.388 3.612 10 O -0.445 6.445 11 N -0.347 5.347 12 C -0.029 4.029 13 C -0.165 4.165 14 C 0.055 3.945 15 H 0.085 0.915 16 N -0.360 5.360 17 C -0.381 4.381 18 H 0.093 0.907 19 C -0.259 4.259 20 N -0.614 5.614 21 Si 0.798 3.202 22 H -0.193 1.193 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.032 4.032 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.283 0.717 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.212 0.788 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.864 2.089 -22.504 22.677 hybrid contribution 0.036 0.264 2.413 2.427 sum 1.899 2.353 -20.091 20.318 Atomic orbital electron populations 1.21540 0.93882 1.02428 1.00879 1.20033 0.96703 0.89035 1.03138 1.21181 0.98964 0.97385 0.87233 1.70134 1.20267 1.04254 1.30357 1.26187 0.98132 0.97750 0.82340 1.43824 1.49888 1.12571 1.09305 0.71673 1.20536 1.17973 0.90004 0.93415 1.16887 0.77407 0.83817 0.83081 1.90793 1.48948 1.21311 1.83407 1.48427 1.65112 1.14891 1.06243 1.22415 1.00147 0.81125 0.99166 1.22852 1.04235 0.97183 0.92222 1.21469 0.95485 0.93744 0.83805 0.91494 1.42415 1.53464 1.39733 1.00410 1.19646 1.20165 1.11237 0.87003 0.90689 1.25500 1.00552 1.00180 0.99672 1.69791 1.38546 1.34103 1.18942 0.85151 0.77459 0.78087 0.79510 1.19257 1.21677 1.22275 1.23040 1.00656 1.00817 0.78724 0.92281 0.90847 0.94711 0.89561 0.90804 0.71713 0.88980 0.88704 0.87483 0.90343 0.78842 0.93833 0.93291 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.05 -1.31 5.93 29.85 0.18 -1.14 16 3 C 0.09 2.31 6.40 41.96 0.27 2.58 16 4 N -0.53 -11.95 11.20 -187.58 -2.10 -14.05 16 5 C 0.24 3.26 13.01 180.33 2.35 5.60 16 6 N -0.55 -8.42 5.67 -188.04 -1.07 -9.48 16 7 H 0.44 4.00 5.14 -92.71 -0.48 3.52 16 8 C -0.10 -2.65 6.89 40.01 0.28 -2.38 16 9 C 0.60 19.32 7.82 86.47 0.68 19.99 16 10 O -0.57 -22.45 15.07 -4.31 -0.06 -22.51 16 11 N -0.61 -18.08 3.33 -816.39 -2.72 -20.79 16 12 C 0.09 1.80 5.12 86.73 0.44 2.24 16 13 C -0.13 -3.07 6.60 31.78 0.21 -2.86 16 14 C 0.17 5.94 3.71 46.38 0.17 6.11 16 15 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 16 N -0.72 -33.93 5.24 -316.37 -1.66 -35.59 16 17 C -0.25 -13.29 9.96 84.03 0.84 -12.45 16 18 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 19 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 20 N -0.96 -56.89 13.06 21.65 0.28 -56.61 16 21 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 25 C 0.09 3.45 6.60 86.85 0.57 4.02 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 30 H 0.07 2.21 6.48 -2.39 -0.02 2.19 16 31 H 0.27 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.09 1.28 7.24 -2.39 -0.02 1.26 16 33 H 0.10 1.27 7.14 -2.39 -0.02 1.25 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 1.99 8.01 -2.39 -0.02 1.97 16 36 H 0.38 18.93 7.77 -92.71 -0.72 18.21 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.94 322.83 1.75 -72.20 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.12 Total: 23.51 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 7.16 Total: 16.14 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -7.26 Total: -136.53 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.94 1.75 -72.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970591891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.957 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds