Wall clock time and date at job start Mon Mar 30 2020 23:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30855 * 125.41789 * 2 1 4 4 C 1.33316 * 109.68608 * 179.78548 * 3 2 1 5 5 C 1.36664 * 107.78662 * 0.37752 * 4 3 2 6 6 C 1.46761 * 126.84899 * 179.89220 * 5 4 3 7 7 O 1.21680 * 120.00072 * 359.69262 * 6 5 4 8 8 N 1.34779 * 120.00234 * 179.68961 * 6 5 4 9 9 C 1.47021 * 125.64811 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.40175 * 178.90217 * 9 8 6 11 11 C 1.55398 * 102.82846 * 337.97362 * 10 9 8 12 12 H 1.08995 * 110.92495 * 277.25662 * 11 10 9 13 13 N 1.46502 * 111.03571 * 153.47428 * 11 10 9 14 14 C 1.46502 * 119.99880 * 306.22783 * 13 11 10 15 15 C 1.36939 * 119.99798 * 126.23563 * 13 11 10 16 16 H 1.07997 * 119.99983 * 23.30361 * 15 13 11 17 17 C 1.38813 * 119.99654 * 203.30696 * 15 13 11 18 18 N 1.31619 * 119.99966 * 14.02036 * 17 15 13 19 19 Si 1.86800 * 120.00023 * 194.01667 * 17 15 13 20 20 H 1.48500 * 109.46929 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46800 * 120.00262 * 19 17 15 22 22 H 1.48497 * 109.47142 * 240.00292 * 19 17 15 23 23 C 1.47429 * 125.64907 * 180.02562 * 8 6 5 24 24 N 1.34500 * 125.41750 * 180.02562 * 2 1 3 25 25 H 0.96996 * 126.46988 * 359.96241 * 24 2 1 26 26 H 1.08999 * 109.47022 * 269.97060 * 1 2 3 27 27 H 1.08999 * 109.47044 * 29.97073 * 1 2 3 28 28 H 1.08998 * 109.46993 * 149.97541 * 1 2 3 29 29 H 1.07996 * 126.10957 * 180.27636 * 4 3 2 30 30 H 1.09000 * 109.88171 * 298.39881 * 9 8 6 31 31 H 1.09001 * 109.88420 * 59.40437 * 9 8 6 32 32 H 1.08998 * 110.72483 * 96.24872 * 10 9 8 33 33 H 1.09005 * 110.71916 * 219.51861 * 10 9 8 34 34 H 1.09003 * 109.46887 * 95.17133 * 14 13 11 35 35 H 1.09004 * 109.46791 * 215.16925 * 14 13 11 36 36 H 1.09000 * 109.47409 * 335.16803 * 14 13 11 37 37 H 0.97000 * 120.00217 * 179.97438 * 18 17 15 38 38 H 1.09001 * 110.36325 * 322.92975 * 23 8 6 39 39 H 1.08997 * 110.36372 * 85.25213 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0047 5 6 3.5976 -0.6608 -0.0008 6 6 4.8029 -1.4983 -0.0006 7 8 5.9038 -0.9801 -0.0009 8 7 4.6903 -2.8413 -0.0002 9 6 3.4282 -3.5954 0.0008 10 6 3.7871 -5.0961 -0.0272 11 6 5.2275 -5.0955 -0.6105 12 1 5.2066 -5.0401 -1.6988 13 7 5.9771 -6.2714 -0.1615 14 6 6.0851 -6.5689 1.2689 15 6 6.5770 -7.0922 -1.0789 16 1 6.8314 -6.7133 -2.0577 17 6 6.8579 -8.4115 -0.7507 18 7 6.3127 -8.9544 0.3171 19 14 8.0096 -9.4162 -1.8248 20 1 8.4864 -8.5806 -2.9560 21 1 9.1722 -9.8663 -1.0179 22 1 7.2861 -10.6001 -2.3539 23 6 5.8124 -3.7976 0.0006 24 7 2.2865 -1.0961 -0.0005 25 1 1.9850 -2.0180 -0.0004 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3978 1.3722 0.0101 30 1 2.8605 -3.3668 0.9027 31 1 2.8418 -3.3380 -0.8813 32 1 3.7795 -5.5133 0.9798 33 1 3.1052 -5.6436 -0.6778 34 1 5.3101 -7.2815 1.5513 35 1 7.0657 -6.9968 1.4779 36 1 5.9601 -5.6500 1.8417 37 1 6.5087 -9.8763 0.5463 38 1 6.6301 -3.4233 -0.6153 39 1 6.1556 -3.9789 1.0191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971210813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:06 Heat of formation + Delta-G solvation = 57.275713 kcal Electronic energy + Delta-G solvation = -21702.421788 eV Core-core repulsion = 18454.153947 eV Total energy + Delta-G solvation = -3248.267840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.40698 -39.62665 -37.50533 -35.02629 -33.00221 -32.18380 -31.52861 -29.99694 -28.38413 -27.35798 -26.14510 -24.25569 -22.75849 -21.85041 -21.15606 -19.96539 -19.47351 -17.60573 -17.16973 -16.33092 -16.17911 -15.66736 -15.31580 -14.66897 -14.19558 -14.08110 -13.64452 -13.57812 -13.39544 -13.00901 -12.88175 -12.72094 -12.60677 -12.50410 -12.11282 -11.52716 -11.05398 -10.88804 -10.63627 -10.59641 -10.49159 -10.39708 -10.30798 -10.06545 -9.99020 -9.86526 -8.79426 -8.67310 -8.43966 -6.91012 -5.85504 -3.33608 1.19806 2.64800 2.66451 3.04266 3.31373 3.33081 3.39756 3.41701 4.11303 4.38467 4.46963 4.71826 4.74227 4.96632 5.03023 5.12679 5.15489 5.23590 5.33676 5.46323 5.53461 5.58841 5.67760 5.73704 5.82691 6.14202 6.19357 6.31545 6.41761 6.48618 6.65365 6.72533 6.99546 7.23287 7.50789 7.59071 7.70485 7.74781 8.13629 8.26003 9.09161 9.71138 10.19301 11.18984 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.003688 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.915638 B = 7590.684844 C = 7945.166946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.229 3.771 3 N -0.497 5.497 4 C 0.066 3.934 5 C -0.079 4.079 6 C 0.605 3.395 7 O -0.529 6.529 8 N -0.611 5.611 9 C 0.091 3.909 10 C -0.149 4.149 11 C 0.174 3.826 12 H 0.080 0.920 13 N -0.583 5.583 14 C 0.157 3.843 15 C -0.264 4.264 16 H 0.071 0.929 17 C 0.007 3.993 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.086 3.914 24 N -0.554 5.554 25 H 0.423 0.577 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.184 0.816 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.002 0.998 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 12.525 0.537 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 N -0.217 5.217 4 C -0.088 4.088 5 C -0.195 4.195 6 C 0.393 3.607 7 O -0.406 6.406 8 N -0.345 5.345 9 C -0.033 4.033 10 C -0.189 4.189 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.303 5.303 14 C 0.013 3.987 15 C -0.393 4.393 16 H 0.089 0.911 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C -0.038 4.038 24 N -0.163 5.163 25 H 0.267 0.733 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.201 0.799 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.908 13.444 0.613 17.970 hybrid contribution 0.645 -1.983 -0.408 2.124 sum -11.263 11.462 0.205 16.071 Atomic orbital electron populations 1.20296 0.84315 1.04519 1.04029 1.23472 0.95916 0.81826 1.02300 1.70174 1.02116 1.28335 1.21089 1.22632 0.94718 0.91167 1.00248 1.21214 0.83724 0.95884 1.18673 1.16493 0.86954 0.80111 0.77155 1.90847 1.25972 1.72418 1.51355 1.48380 1.09290 1.04518 1.72319 1.22218 0.86740 0.94730 0.99586 1.23276 1.00916 0.91204 1.03512 1.21458 0.88454 0.86456 0.97336 0.90191 1.43817 1.58290 1.25249 1.02973 1.20835 1.01113 0.94470 0.82271 1.19262 1.32786 0.90822 0.96418 0.91127 1.25032 0.99916 0.96272 0.98003 1.70072 1.44104 1.13184 1.27358 0.86161 0.80467 0.79970 0.79796 1.20179 1.21477 1.21651 1.23091 0.88951 0.89444 1.02305 1.43866 1.06182 1.10691 1.55603 0.73348 0.89625 0.88683 0.90428 0.79901 0.92282 0.92131 0.90125 0.90123 0.94709 0.93864 0.97932 0.93637 0.90455 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.23 2.38 8.12 -155.61 -1.26 1.11 16 3 N -0.50 -6.52 11.20 -10.58 -0.12 -6.64 16 4 C 0.07 0.91 11.66 -17.48 -0.20 0.70 16 5 C -0.08 -1.09 6.89 -82.14 -0.57 -1.66 16 6 C 0.60 9.91 7.82 -12.82 -0.10 9.81 16 7 O -0.53 -10.34 17.16 5.21 0.09 -10.25 16 8 N -0.61 -9.45 3.33 -172.02 -0.57 -10.02 16 9 C 0.09 1.12 5.12 -3.07 -0.02 1.10 16 10 C -0.15 -2.26 6.53 -24.77 -0.16 -2.42 16 11 C 0.17 3.27 3.53 -65.65 -0.23 3.03 16 12 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 13 N -0.58 -13.62 2.96 -170.87 -0.51 -14.12 16 14 C 0.16 3.62 7.62 59.85 0.46 4.08 16 15 C -0.26 -6.89 9.60 -15.06 -0.14 -7.03 16 16 H 0.07 1.82 7.86 -52.49 -0.41 1.40 16 17 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 18 N -0.90 -25.12 10.79 55.49 0.60 -24.53 16 19 Si 0.91 21.12 29.58 -169.99 -5.03 16.09 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 C 0.09 1.53 6.47 -2.52 -0.02 1.51 16 24 N -0.55 -5.88 5.67 -7.02 -0.04 -5.92 16 25 H 0.42 3.52 5.13 -40.82 -0.21 3.31 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 30 H 0.06 0.61 7.26 -51.93 -0.38 0.23 16 31 H 0.06 0.62 7.10 -51.93 -0.37 0.25 16 32 H 0.08 1.31 7.10 -51.93 -0.37 0.94 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 35 H 0.04 1.09 7.39 -51.93 -0.38 0.70 16 36 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 37 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 39 H 0.07 1.34 6.33 -51.93 -0.33 1.01 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -31.80 317.72 -7.98 -39.78 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.24 Total: 0.54 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.96 Total: 10.29 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.64 Total: -61.24 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.80 -7.98 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971210813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.056 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds