Wall clock time and date at job start Mon Mar 30 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30855 * 125.41789 * 2 1 4 4 C 1.33316 * 109.68608 * 179.78548 * 3 2 1 5 5 C 1.36664 * 107.78662 * 0.37752 * 4 3 2 6 6 C 1.46761 * 126.84899 * 179.89220 * 5 4 3 7 7 O 1.21680 * 120.00072 * 359.69262 * 6 5 4 8 8 N 1.34779 * 120.00234 * 179.68961 * 6 5 4 9 9 C 1.47021 * 125.64811 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.40175 * 178.90217 * 9 8 6 11 11 C 1.55398 * 102.82846 * 337.97362 * 10 9 8 12 12 H 1.08995 * 110.92495 * 277.25662 * 11 10 9 13 13 N 1.46502 * 111.03571 * 153.47428 * 11 10 9 14 14 C 1.46502 * 119.99880 * 306.22783 * 13 11 10 15 15 C 1.36939 * 119.99798 * 126.23563 * 13 11 10 16 16 H 1.07997 * 119.99983 * 23.30361 * 15 13 11 17 17 C 1.38813 * 119.99654 * 203.30696 * 15 13 11 18 18 N 1.31619 * 119.99966 * 14.02036 * 17 15 13 19 19 Si 1.86800 * 120.00023 * 194.01667 * 17 15 13 20 20 H 1.48500 * 109.46929 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46800 * 120.00262 * 19 17 15 22 22 H 1.48497 * 109.47142 * 240.00292 * 19 17 15 23 23 C 1.47429 * 125.64907 * 180.02562 * 8 6 5 24 24 N 1.34500 * 125.41750 * 180.02562 * 2 1 3 25 25 H 0.96996 * 126.46988 * 359.96241 * 24 2 1 26 26 H 1.08999 * 109.47022 * 269.97060 * 1 2 3 27 27 H 1.08999 * 109.47044 * 29.97073 * 1 2 3 28 28 H 1.08998 * 109.46993 * 149.97541 * 1 2 3 29 29 H 1.07996 * 126.10957 * 180.27636 * 4 3 2 30 30 H 1.09000 * 109.88171 * 298.39881 * 9 8 6 31 31 H 1.09001 * 109.88420 * 59.40437 * 9 8 6 32 32 H 1.08998 * 110.72483 * 96.24872 * 10 9 8 33 33 H 1.09005 * 110.71916 * 219.51861 * 10 9 8 34 34 H 1.09003 * 109.46887 * 95.17133 * 14 13 11 35 35 H 1.09004 * 109.46791 * 215.16925 * 14 13 11 36 36 H 1.09000 * 109.47409 * 335.16803 * 14 13 11 37 37 H 0.97000 * 120.00217 * 179.97438 * 18 17 15 38 38 H 1.09001 * 110.36325 * 322.92975 * 23 8 6 39 39 H 1.08997 * 110.36372 * 85.25213 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0047 5 6 3.5976 -0.6608 -0.0008 6 6 4.8029 -1.4983 -0.0006 7 8 5.9038 -0.9801 -0.0009 8 7 4.6903 -2.8413 -0.0002 9 6 3.4282 -3.5954 0.0008 10 6 3.7871 -5.0961 -0.0272 11 6 5.2275 -5.0955 -0.6105 12 1 5.2066 -5.0401 -1.6988 13 7 5.9771 -6.2714 -0.1615 14 6 6.0851 -6.5689 1.2689 15 6 6.5770 -7.0922 -1.0789 16 1 6.8314 -6.7133 -2.0577 17 6 6.8579 -8.4115 -0.7507 18 7 6.3127 -8.9544 0.3171 19 14 8.0096 -9.4162 -1.8248 20 1 8.4864 -8.5806 -2.9560 21 1 9.1722 -9.8663 -1.0179 22 1 7.2861 -10.6001 -2.3539 23 6 5.8124 -3.7976 0.0006 24 7 2.2865 -1.0961 -0.0005 25 1 1.9850 -2.0180 -0.0004 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3978 1.3722 0.0101 30 1 2.8605 -3.3668 0.9027 31 1 2.8418 -3.3380 -0.8813 32 1 3.7795 -5.5133 0.9798 33 1 3.1052 -5.6436 -0.6778 34 1 5.3101 -7.2815 1.5513 35 1 7.0657 -6.9968 1.4779 36 1 5.9601 -5.6500 1.8417 37 1 6.5087 -9.8763 0.5463 38 1 6.6301 -3.4233 -0.6153 39 1 6.1556 -3.9789 1.0191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971210813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:05 Heat of formation + Delta-G solvation = 36.281606 kcal Electronic energy + Delta-G solvation = -21703.332160 eV Core-core repulsion = 18454.153947 eV Total energy + Delta-G solvation = -3249.178213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.34332 -40.91672 -38.93500 -36.70088 -34.11696 -33.34749 -32.76175 -31.42175 -29.69284 -28.33009 -28.06655 -25.64617 -24.28232 -22.94334 -22.17384 -21.03376 -20.92447 -18.98949 -18.75211 -17.66186 -17.39585 -16.78887 -16.66820 -16.16737 -15.57601 -15.23968 -14.99774 -14.84035 -14.48590 -14.36403 -14.28521 -13.93286 -13.60568 -13.39318 -13.20334 -12.99329 -12.87949 -12.59427 -12.43824 -12.21064 -12.10546 -11.88465 -11.59858 -11.55137 -11.24838 -11.13391 -10.67870 -9.98448 -9.50693 -8.82488 -7.86732 -5.36114 0.17376 1.45413 1.48592 1.57326 1.61815 1.70772 1.97642 2.19322 2.49364 3.23033 3.31549 3.42116 3.53510 3.77927 3.86576 4.00159 4.11171 4.18723 4.24238 4.34359 4.44561 4.58116 4.67398 4.77955 4.80948 4.85169 4.90582 5.05084 5.13612 5.14188 5.24250 5.35170 5.44969 5.62776 5.68540 6.22867 6.28856 6.30268 6.81134 6.89926 7.10982 7.80471 8.24108 9.15956 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.003688 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.915638 B = 7590.684844 C = 7945.166946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.248 3.752 3 N -0.526 5.526 4 C 0.062 3.938 5 C -0.097 4.097 6 C 0.605 3.395 7 O -0.572 6.572 8 N -0.611 5.611 9 C 0.096 3.904 10 C -0.137 4.137 11 C 0.167 3.833 12 H 0.076 0.924 13 N -0.599 5.599 14 C 0.176 3.824 15 C -0.270 4.270 16 H 0.070 0.930 17 C -0.044 4.044 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.097 3.903 24 N -0.544 5.544 25 H 0.435 0.565 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.183 0.817 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.015 0.985 35 H 0.012 0.988 36 H 0.029 0.971 37 H 0.249 0.751 38 H 0.058 0.942 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 13.283 0.081 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 N -0.247 5.247 4 C -0.093 4.093 5 C -0.213 4.213 6 C 0.395 3.605 7 O -0.452 6.452 8 N -0.344 5.344 9 C -0.027 4.027 10 C -0.177 4.177 11 C 0.057 3.943 12 H 0.094 0.906 13 N -0.320 5.320 14 C 0.031 3.969 15 C -0.400 4.400 16 H 0.088 0.912 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.194 1.194 21 H -0.220 1.220 22 H -0.216 1.216 23 C -0.027 4.027 24 N -0.154 5.154 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.200 0.800 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.548 14.210 0.142 20.337 hybrid contribution 1.371 -2.105 -0.274 2.527 sum -13.177 12.105 -0.131 17.894 Atomic orbital electron populations 1.20582 0.80714 1.06217 1.05695 1.24390 0.97572 0.80906 0.98776 1.70222 1.01946 1.29754 1.22786 1.22787 0.95388 0.91411 0.99684 1.20726 0.84110 0.95410 1.21086 1.16782 0.87277 0.80195 0.76269 1.90818 1.27816 1.73190 1.53388 1.48357 1.09695 1.04258 1.72065 1.22370 0.85699 0.92000 1.02602 1.23087 0.98180 0.93581 1.02816 1.21572 0.90423 0.84894 0.97373 0.90587 1.43941 1.59416 1.26052 1.02633 1.20533 0.98586 0.94971 0.82818 1.19541 1.32516 0.91225 0.96708 0.91211 1.25703 1.01530 0.97374 0.99373 1.70203 1.45466 1.13148 1.28867 0.85238 0.78443 0.78517 0.78417 1.19352 1.22009 1.21628 1.22727 0.89394 0.89539 1.01084 1.43749 1.04837 1.11485 1.55328 0.71917 0.87797 0.88087 0.87650 0.79985 0.89251 0.89060 0.91014 0.88880 0.96651 0.96966 0.95230 0.94132 0.92298 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.51 71.24 0.75 0.24 16 2 C 0.25 4.30 8.12 138.20 1.12 5.42 16 3 N -0.53 -12.74 11.20 -187.39 -2.10 -14.84 16 4 C 0.06 1.63 11.66 84.10 0.98 2.61 16 5 C -0.10 -2.52 6.89 40.01 0.28 -2.25 16 6 C 0.60 19.35 7.82 86.47 0.68 20.03 16 7 O -0.57 -22.74 17.16 -4.28 -0.07 -22.81 16 8 N -0.61 -17.99 3.33 -816.38 -2.72 -20.70 16 9 C 0.10 2.02 5.12 86.73 0.44 2.46 16 10 C -0.14 -3.83 6.53 31.87 0.21 -3.63 16 11 C 0.17 6.14 3.53 46.47 0.16 6.31 16 12 H 0.08 2.85 7.95 -2.39 -0.02 2.83 16 13 N -0.60 -28.15 2.96 -694.52 -2.05 -30.21 16 14 C 0.18 8.20 7.62 127.77 0.97 9.17 16 15 C -0.27 -14.21 9.60 84.03 0.81 -13.41 16 16 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 17 C -0.04 -2.36 5.08 84.86 0.43 -1.93 16 18 N -0.93 -52.70 10.79 21.65 0.23 -52.46 16 19 Si 0.97 43.83 29.58 68.60 2.03 45.86 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 C 0.10 3.45 6.47 86.86 0.56 4.01 16 24 N -0.54 -9.66 5.67 -176.11 -1.00 -10.65 16 25 H 0.43 5.23 5.13 -92.71 -0.48 4.75 16 26 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.09 1.43 7.26 -2.39 -0.02 1.41 16 31 H 0.09 1.44 7.10 -2.39 -0.02 1.42 16 32 H 0.07 2.18 7.10 -2.39 -0.02 2.16 16 33 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.02 0.77 7.33 -2.39 -0.02 0.75 16 35 H 0.01 0.61 7.39 -2.38 -0.02 0.59 16 36 H 0.03 1.19 6.34 -2.39 -0.02 1.17 16 37 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 38 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 39 H 0.06 2.29 6.33 -2.39 -0.02 2.27 16 Total: -1.00 -70.77 317.72 2.31 -68.46 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.60 Total: 8.33 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 7.39 Total: 29.03 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -7.63 Total: -128.87 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.07 Total: -22.81 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -70.77 2.31 -68.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971210813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.744 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds