Wall clock time and date at job start Mon Mar 30 2020 23:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30853 * 125.41699 * 2 1 4 4 C 1.33324 * 109.68151 * 179.78723 * 3 2 1 5 5 C 1.36661 * 107.78728 * 0.38177 * 4 3 2 6 6 C 1.46769 * 126.84400 * 179.89698 * 5 4 3 7 7 O 1.21680 * 120.00000 * 7.38175 * 6 5 4 8 8 N 1.34769 * 119.99907 * 187.38229 * 6 5 4 9 9 C 1.47429 * 125.65039 * 357.60599 * 8 6 5 10 10 C 1.54905 * 104.83375 * 155.90588 * 9 8 6 11 11 C 1.55155 * 101.58229 * 37.00807 * 10 9 8 12 12 H 1.09007 * 110.71765 * 83.03849 * 11 10 9 13 13 N 1.46498 * 110.72349 * 206.13294 * 11 10 9 14 14 C 1.36938 * 120.00295 * 273.55264 * 13 11 10 15 15 H 1.08002 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00392 * 179.97438 * 14 13 11 17 17 N 1.31623 * 119.99604 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00318 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47045 * 59.99951 * 18 16 14 20 20 H 1.48492 * 109.46912 * 299.99710 * 18 16 14 21 21 H 1.48501 * 109.46869 * 179.97438 * 18 16 14 22 22 C 1.47024 * 125.64845 * 177.64586 * 8 6 5 23 23 H 1.08994 * 109.88048 * 61.60842 * 22 8 6 24 24 C 1.52997 * 109.88190 * 300.44040 * 22 8 6 25 25 N 1.34502 * 125.41603 * 180.02562 * 2 1 3 26 26 H 0.97000 * 126.47585 * 359.95665 * 25 2 1 27 27 H 1.09002 * 109.46884 * 269.97036 * 1 2 3 28 28 H 1.08994 * 109.47204 * 29.97416 * 1 2 3 29 29 H 1.08999 * 109.46927 * 149.97446 * 1 2 3 30 30 H 1.07996 * 126.10357 * 180.28492 * 4 3 2 31 31 H 1.08994 * 110.36663 * 37.06536 * 9 8 6 32 32 H 1.09005 * 110.45967 * 274.79273 * 9 8 6 33 33 H 1.09000 * 111.00872 * 278.93706 * 10 9 8 34 34 H 1.08999 * 111.00460 * 155.08694 * 10 9 8 35 35 H 0.97004 * 119.99796 * 93.54343 * 13 11 10 36 36 H 0.96999 * 120.00270 * 0.02562 * 17 16 14 37 37 H 1.08998 * 109.47537 * 302.19045 * 24 22 8 38 38 H 1.09002 * 109.46787 * 62.19237 * 24 22 8 39 39 H 1.09006 * 109.47058 * 182.18833 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 3.5976 -0.6609 -0.0009 6 6 4.8029 -1.4983 -0.0008 7 8 5.8984 -0.9878 0.1401 8 7 4.6963 -2.8327 -0.1567 9 6 3.4348 -3.5846 -0.2865 10 6 3.8226 -4.8832 -1.0367 11 6 5.2193 -5.1866 -0.4329 12 1 5.1227 -5.7122 0.5172 13 7 6.0326 -5.9628 -1.3721 14 6 5.9380 -7.3287 -1.3933 15 1 5.2639 -7.8338 -0.7173 16 6 6.7083 -8.0642 -2.2836 17 7 7.5293 -7.4485 -3.1078 18 14 6.5796 -9.9275 -2.3120 19 1 5.1847 -10.3225 -2.6333 20 1 6.9537 -10.4698 -0.9812 21 1 7.4979 -10.4713 -3.3446 22 6 5.8188 -3.7799 -0.2246 23 1 6.3841 -3.7520 0.7069 24 6 6.7300 -3.4233 -1.4007 25 7 2.2865 -1.0961 -0.0005 26 1 1.9850 -2.0181 -0.0003 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 4.3978 1.3721 0.0101 31 1 2.7106 -3.0131 -0.8669 32 1 3.0294 -3.8214 0.6972 33 1 3.8908 -4.7087 -2.1105 34 1 3.1191 -5.6863 -0.8169 35 1 6.6382 -5.5091 -1.9791 36 1 7.5964 -6.4810 -3.0928 37 1 6.1521 -3.4347 -2.3247 38 1 7.1496 -2.4291 -1.2468 39 1 7.5379 -4.1520 -1.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986059796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:11 Heat of formation + Delta-G solvation = 53.177437 kcal Electronic energy + Delta-G solvation = -21894.156338 eV Core-core repulsion = 18645.710783 eV Total energy + Delta-G solvation = -3248.445555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.46882 -39.95911 -37.63381 -34.72541 -33.12094 -32.26599 -31.48599 -30.98591 -28.96880 -27.43874 -25.43964 -23.96739 -23.34619 -21.89316 -21.38772 -20.11699 -19.26949 -17.86385 -17.52372 -16.46724 -16.11648 -15.71391 -15.36195 -14.97963 -14.30629 -14.15971 -13.80374 -13.71085 -13.50638 -13.17048 -12.91511 -12.82115 -12.67891 -12.33958 -12.07523 -11.95162 -11.46064 -10.99895 -10.75854 -10.51680 -10.48548 -10.39437 -10.31821 -10.06563 -9.89870 -9.29836 -9.05462 -8.84484 -8.52599 -7.19931 -6.22203 -3.24643 1.15648 2.58590 2.62206 2.94034 3.27758 3.44876 3.47791 3.65799 4.07371 4.35941 4.55900 4.63507 4.67224 4.91316 5.02886 5.08718 5.11704 5.16603 5.31365 5.32754 5.49939 5.51224 5.57928 5.62040 5.78584 5.80977 5.96406 6.04156 6.30981 6.32226 6.35717 6.47647 6.56638 6.75177 6.94625 7.43949 7.67910 7.70747 8.08596 8.63103 9.07162 9.93719 10.07274 11.25289 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033358 B = 0.003914 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.165449 B = 7152.495576 C = 7752.186790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.229 3.771 3 N -0.496 5.496 4 C 0.067 3.933 5 C -0.080 4.080 6 C 0.607 3.393 7 O -0.525 6.525 8 N -0.608 5.608 9 C 0.086 3.914 10 C -0.151 4.151 11 C 0.180 3.820 12 H 0.066 0.934 13 N -0.727 5.727 14 C -0.340 4.340 15 H 0.066 0.934 16 C -0.040 4.040 17 N -0.939 5.939 18 Si 1.081 2.919 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.284 1.284 22 C 0.129 3.871 23 H 0.077 0.923 24 C -0.160 4.160 25 N -0.555 5.555 26 H 0.423 0.577 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.184 0.816 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.375 0.625 36 H 0.255 0.745 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.355 11.178 6.680 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 N -0.217 5.217 4 C -0.087 4.087 5 C -0.196 4.196 6 C 0.395 3.605 7 O -0.402 6.402 8 N -0.342 5.342 9 C -0.038 4.038 10 C -0.192 4.192 11 C 0.068 3.932 12 H 0.084 0.916 13 N -0.372 5.372 14 C -0.470 4.470 15 H 0.084 0.916 16 C -0.238 4.238 17 N -0.583 5.583 18 Si 0.911 3.089 19 H -0.222 1.222 20 H -0.221 1.221 21 H -0.210 1.210 22 C 0.026 3.974 23 H 0.095 0.905 24 C -0.218 4.218 25 N -0.166 5.166 26 H 0.268 0.732 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.201 0.799 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.213 0.787 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.534 10.775 6.152 18.361 hybrid contribution -0.440 0.226 0.568 0.754 sum -13.974 11.001 6.721 19.012 Atomic orbital electron populations 1.20298 0.84298 1.04557 1.04017 1.23493 0.95945 0.81862 1.02205 1.70180 1.02097 1.28333 1.21043 1.22635 0.94743 0.91131 1.00178 1.21200 0.83699 0.95887 1.18771 1.16487 0.86943 0.79965 0.77094 1.90838 1.26310 1.72399 1.50620 1.48496 1.08775 1.05322 1.71575 1.22600 0.86617 0.94475 1.00127 1.23554 1.01026 0.94013 1.00602 1.21103 0.89316 0.88651 0.94116 0.91595 1.42664 1.48527 1.03928 1.42087 1.20033 1.23881 0.82825 1.20311 0.91600 1.25817 0.96107 1.06558 0.95349 1.70899 1.38546 1.09891 1.38974 0.83231 0.75656 0.74137 0.75855 1.22212 1.22147 1.20962 1.21876 0.87186 0.88882 0.99443 0.90520 1.22021 0.99978 1.02317 0.97490 1.44038 1.06186 1.10672 1.55703 0.73159 0.89618 0.88652 0.90432 0.79902 0.91954 0.91167 0.90511 0.90159 0.78750 0.93357 0.92520 0.91677 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.23 2.35 8.12 -155.61 -1.26 1.09 16 3 N -0.50 -6.47 11.20 -10.58 -0.12 -6.59 16 4 C 0.07 0.91 11.67 -17.47 -0.20 0.70 16 5 C -0.08 -1.09 6.85 -82.14 -0.56 -1.65 16 6 C 0.61 9.67 7.58 -12.82 -0.10 9.58 16 7 O -0.53 -9.88 15.90 5.21 0.08 -9.80 16 8 N -0.61 -9.11 3.08 -164.52 -0.51 -9.62 16 9 C 0.09 1.02 5.53 -2.53 -0.01 1.01 16 10 C -0.15 -2.29 6.77 -24.59 -0.17 -2.46 16 11 C 0.18 3.32 3.46 -66.10 -0.23 3.09 16 12 H 0.07 1.22 8.12 -51.92 -0.42 0.80 16 13 N -0.73 -17.01 5.02 -51.65 -0.26 -17.27 16 14 C -0.34 -9.00 9.98 -15.06 -0.15 -9.15 16 15 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 16 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 17 N -0.94 -28.10 13.70 55.49 0.76 -27.34 16 18 Si 1.08 24.86 29.92 -169.99 -5.09 19.77 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.13 2.21 3.46 -66.95 -0.23 1.98 16 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 24 C -0.16 -2.89 7.95 37.16 0.30 -2.60 16 25 N -0.55 -5.79 5.45 -7.01 -0.04 -5.83 16 26 H 0.42 3.41 5.39 -40.82 -0.22 3.19 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.06 0.62 5.49 -51.93 -0.29 0.34 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.37 9.08 3.76 -40.82 -0.15 8.92 16 36 H 0.26 7.53 6.77 -40.82 -0.28 7.25 16 37 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.06 1.18 6.84 -51.93 -0.36 0.83 16 39 H 0.08 1.49 6.67 -51.93 -0.35 1.15 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -33.24 316.95 -7.79 -41.03 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.07 Total: 10.52 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.34 Total: 0.35 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.16 Total: -66.65 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.24 -7.79 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986059796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.209 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds