Wall clock time and date at job start Mon Mar 30 2020 23:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30853 * 125.41699 * 2 1 4 4 C 1.33324 * 109.68151 * 179.78723 * 3 2 1 5 5 C 1.36661 * 107.78728 * 0.38177 * 4 3 2 6 6 C 1.46769 * 126.84400 * 179.89698 * 5 4 3 7 7 O 1.21680 * 120.00000 * 7.38175 * 6 5 4 8 8 N 1.34769 * 119.99907 * 187.38229 * 6 5 4 9 9 C 1.47429 * 125.65039 * 357.60599 * 8 6 5 10 10 C 1.54905 * 104.83375 * 155.90588 * 9 8 6 11 11 C 1.55155 * 101.58229 * 37.00807 * 10 9 8 12 12 H 1.09007 * 110.71765 * 83.03849 * 11 10 9 13 13 N 1.46498 * 110.72349 * 206.13294 * 11 10 9 14 14 C 1.36938 * 120.00295 * 273.55264 * 13 11 10 15 15 H 1.08002 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00392 * 179.97438 * 14 13 11 17 17 N 1.31623 * 119.99604 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00318 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47045 * 59.99951 * 18 16 14 20 20 H 1.48492 * 109.46912 * 299.99710 * 18 16 14 21 21 H 1.48501 * 109.46869 * 179.97438 * 18 16 14 22 22 C 1.47024 * 125.64845 * 177.64586 * 8 6 5 23 23 H 1.08994 * 109.88048 * 61.60842 * 22 8 6 24 24 C 1.52997 * 109.88190 * 300.44040 * 22 8 6 25 25 N 1.34502 * 125.41603 * 180.02562 * 2 1 3 26 26 H 0.97000 * 126.47585 * 359.95665 * 25 2 1 27 27 H 1.09002 * 109.46884 * 269.97036 * 1 2 3 28 28 H 1.08994 * 109.47204 * 29.97416 * 1 2 3 29 29 H 1.08999 * 109.46927 * 149.97446 * 1 2 3 30 30 H 1.07996 * 126.10357 * 180.28492 * 4 3 2 31 31 H 1.08994 * 110.36663 * 37.06536 * 9 8 6 32 32 H 1.09005 * 110.45967 * 274.79273 * 9 8 6 33 33 H 1.09000 * 111.00872 * 278.93706 * 10 9 8 34 34 H 1.08999 * 111.00460 * 155.08694 * 10 9 8 35 35 H 0.97004 * 119.99796 * 93.54343 * 13 11 10 36 36 H 0.96999 * 120.00270 * 0.02562 * 17 16 14 37 37 H 1.08998 * 109.47537 * 302.19045 * 24 22 8 38 38 H 1.09002 * 109.46787 * 62.19237 * 24 22 8 39 39 H 1.09006 * 109.47058 * 182.18833 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 3.5976 -0.6609 -0.0009 6 6 4.8029 -1.4983 -0.0008 7 8 5.8984 -0.9878 0.1401 8 7 4.6963 -2.8327 -0.1567 9 6 3.4348 -3.5846 -0.2865 10 6 3.8226 -4.8832 -1.0367 11 6 5.2193 -5.1866 -0.4329 12 1 5.1227 -5.7122 0.5172 13 7 6.0326 -5.9628 -1.3721 14 6 5.9380 -7.3287 -1.3933 15 1 5.2639 -7.8338 -0.7173 16 6 6.7083 -8.0642 -2.2836 17 7 7.5293 -7.4485 -3.1078 18 14 6.5796 -9.9275 -2.3120 19 1 5.1847 -10.3225 -2.6333 20 1 6.9537 -10.4698 -0.9812 21 1 7.4979 -10.4713 -3.3446 22 6 5.8188 -3.7799 -0.2246 23 1 6.3841 -3.7520 0.7069 24 6 6.7300 -3.4233 -1.4007 25 7 2.2865 -1.0961 -0.0005 26 1 1.9850 -2.0181 -0.0003 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 4.3978 1.3721 0.0101 31 1 2.7106 -3.0131 -0.8669 32 1 3.0294 -3.8214 0.6972 33 1 3.8908 -4.7087 -2.1105 34 1 3.1191 -5.6863 -0.8169 35 1 6.6382 -5.5091 -1.9791 36 1 7.5964 -6.4810 -3.0928 37 1 6.1521 -3.4347 -2.3247 38 1 7.1496 -2.4291 -1.2468 39 1 7.5379 -4.1520 -1.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986059796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:10 Heat of formation + Delta-G solvation = 30.476549 kcal Electronic energy + Delta-G solvation = -21895.140722 eV Core-core repulsion = 18645.710783 eV Total energy + Delta-G solvation = -3249.429939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.39887 -41.23403 -39.00719 -36.40391 -34.31493 -33.32210 -32.72395 -32.28256 -30.54996 -28.33082 -26.88798 -25.63549 -24.76908 -23.03340 -22.40401 -21.10597 -20.64946 -19.55369 -18.88818 -17.60285 -17.24430 -17.11958 -16.54736 -16.40552 -15.73308 -15.41937 -15.12304 -14.99390 -14.61703 -14.31769 -14.09745 -13.89145 -13.52910 -13.47935 -13.32531 -13.23212 -12.92609 -12.66222 -12.45475 -12.06809 -11.86719 -11.78382 -11.56561 -11.30233 -11.27544 -11.10092 -10.92888 -10.03989 -9.54608 -9.15587 -8.38399 -5.34523 0.14738 1.53482 1.60972 1.67682 1.70157 1.85970 1.91900 2.16247 2.72437 3.19532 3.36871 3.41974 3.50671 3.67880 3.69860 3.92687 4.03749 4.11901 4.15279 4.22349 4.33251 4.40296 4.47832 4.54830 4.66228 4.75312 4.82309 4.86229 5.02778 5.06044 5.09535 5.11687 5.32018 5.41727 5.61308 6.18501 6.25954 6.48769 6.78192 6.87235 7.06691 7.96807 8.08333 9.12725 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033358 B = 0.003914 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.165449 B = 7152.495576 C = 7752.186790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.247 3.753 3 N -0.526 5.526 4 C 0.061 3.939 5 C -0.098 4.098 6 C 0.606 3.394 7 O -0.565 6.565 8 N -0.607 5.607 9 C 0.092 3.908 10 C -0.140 4.140 11 C 0.172 3.828 12 H 0.070 0.930 13 N -0.744 5.744 14 C -0.330 4.330 15 H 0.075 0.925 16 C -0.104 4.104 17 N -0.977 5.977 18 Si 1.128 2.872 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.299 1.299 22 C 0.136 3.864 23 H 0.071 0.929 24 C -0.148 4.148 25 N -0.545 5.545 26 H 0.435 0.565 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.367 0.633 36 H 0.242 0.758 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.798 10.900 7.835 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 N -0.247 5.247 4 C -0.093 4.093 5 C -0.214 4.214 6 C 0.396 3.604 7 O -0.444 6.444 8 N -0.340 5.340 9 C -0.031 4.031 10 C -0.181 4.181 11 C 0.062 3.938 12 H 0.088 0.912 13 N -0.388 5.388 14 C -0.461 4.461 15 H 0.093 0.907 16 C -0.295 4.295 17 N -0.625 5.625 18 Si 0.953 3.047 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.225 1.225 22 C 0.032 3.968 23 H 0.089 0.911 24 C -0.206 4.206 25 N -0.156 5.156 26 H 0.283 0.717 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.200 0.800 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.203 0.797 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.057 10.502 7.352 21.337 hybrid contribution 0.532 0.424 0.272 0.733 sum -16.525 10.926 7.624 21.227 Atomic orbital electron populations 1.20583 0.80704 1.06179 1.05741 1.24408 0.97604 0.80955 0.98750 1.70224 1.01950 1.29778 1.22750 1.22786 0.95397 0.91415 0.99733 1.20753 0.84150 0.95436 1.21048 1.16767 0.87257 0.80048 0.76306 1.90811 1.27995 1.73104 1.52469 1.48458 1.09174 1.05046 1.71320 1.22773 0.85699 0.92595 1.01989 1.23337 0.98894 0.96326 0.99547 1.21313 0.90488 0.88563 0.93459 0.91200 1.42848 1.49461 1.03500 1.43004 1.20406 1.22396 0.84286 1.18990 0.90710 1.27172 0.96315 1.10351 0.95642 1.71008 1.41051 1.09188 1.41258 0.82621 0.76283 0.69751 0.76070 1.20030 1.20408 1.22521 1.21624 0.87782 0.88944 0.98496 0.91060 1.21860 0.99566 1.01390 0.97772 1.43914 1.04855 1.11452 1.55427 0.71714 0.87668 0.88154 0.87700 0.80025 0.89252 0.87702 0.92492 0.88495 0.79691 0.94735 0.93268 0.92080 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.51 71.24 0.75 0.24 16 2 C 0.25 4.27 8.12 138.20 1.12 5.39 16 3 N -0.53 -12.76 11.20 -187.39 -2.10 -14.86 16 4 C 0.06 1.61 11.67 84.10 0.98 2.59 16 5 C -0.10 -2.52 6.85 40.01 0.27 -2.24 16 6 C 0.61 18.93 7.58 86.47 0.66 19.59 16 7 O -0.56 -21.63 15.90 -4.29 -0.07 -21.69 16 8 N -0.61 -17.37 3.08 -792.63 -2.44 -19.81 16 9 C 0.09 1.89 5.53 86.85 0.48 2.37 16 10 C -0.14 -3.95 6.77 31.98 0.22 -3.74 16 11 C 0.17 6.17 3.46 46.18 0.16 6.33 16 12 H 0.07 2.47 8.12 -2.38 -0.02 2.45 16 13 N -0.74 -35.10 5.02 -317.32 -1.59 -36.69 16 14 C -0.33 -17.35 9.98 84.03 0.84 -16.51 16 15 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 16 C -0.10 -5.79 5.50 84.86 0.47 -5.33 16 17 N -0.98 -60.05 13.70 21.65 0.30 -59.75 16 18 Si 1.13 49.87 29.92 68.60 2.05 51.93 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 22 C 0.14 4.63 3.46 45.34 0.16 4.79 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 24 C -0.15 -5.55 7.95 71.98 0.57 -4.98 16 25 N -0.54 -9.56 5.45 -176.10 -0.96 -10.52 16 26 H 0.44 5.07 5.39 -92.71 -0.50 4.57 16 27 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.09 1.40 5.49 -2.39 -0.01 1.39 16 32 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.37 18.42 3.76 -92.71 -0.35 18.07 16 36 H 0.24 14.92 6.77 -92.71 -0.63 14.29 16 37 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 38 H 0.06 2.32 6.84 -2.39 -0.02 2.30 16 39 H 0.06 2.40 6.67 -2.38 -0.02 2.39 16 Total: -1.00 -74.23 316.95 2.24 -71.99 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.38 Total: 30.91 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.67 Total: 8.50 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -6.80 Total: -141.64 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.07 Total: -21.69 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.93 kcal Total: -74.23 2.24 -71.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986059796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.468 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds