Wall clock time and date at job start Mon Mar 30 2020 23:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30860 * 125.41547 * 2 1 4 4 C 1.33321 * 109.68087 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78890 * 359.97438 * 4 3 2 6 6 C 1.46769 * 126.84477 * 179.97438 * 5 4 3 7 7 O 1.21678 * 119.99894 * 353.48805 * 6 5 4 8 8 N 1.34777 * 119.99902 * 173.48411 * 6 5 4 9 9 C 1.47426 * 125.64750 * 354.45462 * 8 6 5 10 10 C 1.54913 * 104.83091 * 204.16612 * 9 8 6 11 11 C 1.55154 * 101.57834 * 322.98848 * 10 9 8 12 12 H 1.08995 * 110.72347 * 276.95995 * 11 10 9 13 13 N 1.46504 * 110.71967 * 153.86702 * 11 10 9 14 14 C 1.36936 * 119.99970 * 86.45215 * 13 11 10 15 15 H 1.08000 * 119.99789 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99972 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99706 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99953 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46944 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47022 * 59.99810 * 18 16 14 21 21 H 1.48493 * 109.46889 * 299.99712 * 18 16 14 22 22 C 1.47018 * 125.64707 * 174.49475 * 8 6 5 23 23 H 1.08998 * 109.87981 * 59.49413 * 22 8 6 24 24 C 1.52991 * 109.88424 * 298.32021 * 22 8 6 25 25 N 1.34491 * 125.42009 * 180.30734 * 2 1 3 26 26 H 0.97004 * 126.47335 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47055 * 89.98191 * 1 2 3 28 28 H 1.09001 * 109.47126 * 209.97778 * 1 2 3 29 29 H 1.08999 * 109.47206 * 329.97689 * 1 2 3 30 30 H 1.08001 * 126.10537 * 179.97438 * 4 3 2 31 31 H 1.08999 * 110.37190 * 85.32363 * 9 8 6 32 32 H 1.09000 * 110.46191 * 323.05066 * 9 8 6 33 33 H 1.09003 * 110.99975 * 204.91602 * 10 9 8 34 34 H 1.08999 * 111.00449 * 81.06617 * 10 9 8 35 35 H 0.96999 * 119.99783 * 266.45382 * 13 11 10 36 36 H 0.96993 * 120.00372 * 0.02562 * 17 16 14 37 37 H 1.08994 * 109.47305 * 302.19405 * 24 22 8 38 38 H 1.08999 * 109.46838 * 62.19337 * 24 22 8 39 39 H 1.08998 * 109.47486 * 182.19154 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4982 -0.0013 7 8 5.8998 -0.9856 -0.1219 8 7 4.6948 -2.8351 0.1315 9 6 3.4475 -3.5737 0.3999 10 6 3.9051 -4.8973 1.0622 11 6 5.2098 -5.2021 0.2798 12 1 4.9864 -5.7003 -0.6635 13 7 6.1219 -6.0141 1.0892 14 6 6.0084 -7.3787 1.0874 15 1 5.2468 -7.8564 0.4889 16 6 6.8722 -8.1481 1.8548 17 7 7.8007 -7.5658 2.5837 18 14 6.7178 -10.0097 1.8517 19 1 7.7502 -10.5934 2.7454 20 1 6.9130 -10.5203 0.4710 21 1 5.3680 -10.3952 2.3359 22 6 5.8013 -3.7981 0.0335 23 1 6.5545 -3.5755 0.7893 24 6 6.4251 -3.7338 -1.3620 25 7 2.2865 -1.0960 -0.0059 26 1 1.9850 -2.0180 -0.0105 27 1 -0.3633 0.0003 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.3978 1.3722 -0.0011 31 1 2.9197 -3.7783 -0.5316 32 1 2.8096 -3.0098 1.0805 33 1 3.1665 -5.6848 0.9123 34 1 4.1102 -4.7529 2.1229 35 1 6.8061 -5.5850 1.6264 36 1 7.8811 -6.5992 2.5850 37 1 5.6606 -3.9385 -2.1115 38 1 6.8405 -2.7400 -1.5288 39 1 7.2186 -4.4770 -1.4400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986059798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:14 Heat of formation + Delta-G solvation = 42.113287 kcal Electronic energy + Delta-G solvation = -21777.375821 eV Core-core repulsion = 18528.450489 eV Total energy + Delta-G solvation = -3248.925332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46496 -39.90864 -37.57030 -34.63457 -33.14401 -32.27955 -31.46134 -31.11410 -29.15007 -27.48323 -25.28918 -23.78213 -23.31886 -21.73546 -21.31329 -20.26758 -19.75522 -17.76059 -17.40405 -16.47392 -16.24194 -15.70542 -15.24719 -14.83213 -14.18719 -14.15145 -13.76251 -13.66761 -13.63431 -13.14776 -13.04749 -12.86634 -12.77578 -12.48408 -12.18999 -11.81183 -11.39497 -11.09007 -10.76210 -10.66596 -10.53481 -10.41640 -10.33477 -10.07706 -9.96422 -9.30010 -9.05178 -8.84563 -8.52991 -7.20568 -6.22065 -3.24981 1.14688 2.57855 2.62144 2.93408 3.27046 3.44763 3.47678 3.65734 4.06616 4.38846 4.55984 4.62367 4.68892 4.92907 5.00547 5.07840 5.10744 5.15136 5.24880 5.34928 5.50324 5.53922 5.55495 5.60473 5.72551 5.80470 5.87185 6.05058 6.22210 6.33041 6.35964 6.41651 6.49968 6.69308 6.94340 7.43821 7.67037 7.70010 8.08093 8.62629 9.06024 9.92740 10.05913 11.25547 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.003857 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.789783 B = 7257.150998 C = 7798.815281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.229 3.771 3 N -0.496 5.496 4 C 0.067 3.933 5 C -0.080 4.080 6 C 0.607 3.393 7 O -0.525 6.525 8 N -0.609 5.609 9 C 0.086 3.914 10 C -0.152 4.152 11 C 0.183 3.817 12 H 0.068 0.932 13 N -0.725 5.725 14 C -0.339 4.339 15 H 0.067 0.933 16 C -0.039 4.039 17 N -0.938 5.938 18 Si 1.081 2.919 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.295 1.295 22 C 0.128 3.872 23 H 0.079 0.921 24 C -0.154 4.154 25 N -0.554 5.554 26 H 0.423 0.577 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.369 0.631 36 H 0.256 0.744 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 11.339 -6.317 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.034 4.034 3 N -0.216 5.216 4 C -0.087 4.087 5 C -0.196 4.196 6 C 0.395 3.605 7 O -0.401 6.401 8 N -0.343 5.343 9 C -0.037 4.037 10 C -0.193 4.193 11 C 0.071 3.929 12 H 0.086 0.914 13 N -0.367 5.367 14 C -0.470 4.470 15 H 0.085 0.915 16 C -0.238 4.238 17 N -0.582 5.582 18 Si 0.911 3.089 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.222 1.222 22 C 0.025 3.975 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.163 5.163 26 H 0.266 0.734 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.201 0.799 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.323 10.918 -5.894 18.949 hybrid contribution -0.449 0.266 -0.438 0.681 sum -14.771 11.184 -6.332 19.580 Atomic orbital electron populations 1.20299 0.84281 1.04565 1.04026 1.23484 0.95930 0.81801 1.02205 1.70185 1.02100 1.28301 1.21059 1.22638 0.94743 0.91143 1.00137 1.21192 0.83706 0.95873 1.18799 1.16490 0.86933 0.79970 0.77101 1.90842 1.26166 1.72341 1.50800 1.48459 1.10482 1.04883 1.70428 1.22557 0.87154 0.94737 0.99292 1.23563 1.00916 0.93689 1.01169 1.21166 0.89104 0.88183 0.94446 0.91448 1.42349 1.37426 1.03676 1.53211 1.19986 1.17093 0.82560 1.27337 0.91542 1.25819 0.95097 1.06396 0.96469 1.70884 1.34444 1.11052 1.41851 0.83239 0.75607 0.74221 0.75852 1.20957 1.22143 1.22187 1.21942 0.88606 0.88702 0.98291 0.90285 1.22042 1.01047 1.02762 0.95396 1.43840 1.06171 1.10609 1.55688 0.73390 0.89626 0.90415 0.88637 0.79891 0.91546 0.91699 0.90157 0.90453 0.79650 0.93232 0.92951 0.91909 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.23 2.34 8.12 -155.61 -1.26 1.07 16 3 N -0.50 -6.43 11.20 -10.58 -0.12 -6.55 16 4 C 0.07 0.91 11.67 -17.48 -0.20 0.70 16 5 C -0.08 -1.08 6.82 -82.14 -0.56 -1.64 16 6 C 0.61 9.70 7.56 -12.81 -0.10 9.60 16 7 O -0.53 -9.95 16.18 5.21 0.08 -9.87 16 8 N -0.61 -9.14 3.06 -164.52 -0.50 -9.65 16 9 C 0.09 1.04 5.27 -2.53 -0.01 1.02 16 10 C -0.15 -2.33 6.77 -24.58 -0.17 -2.50 16 11 C 0.18 3.36 3.11 -66.09 -0.21 3.15 16 12 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 13 N -0.72 -17.03 5.25 -51.65 -0.27 -17.30 16 14 C -0.34 -8.97 9.98 -15.06 -0.15 -9.12 16 15 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 16 C -0.04 -1.10 5.50 -17.43 -0.10 -1.19 16 17 N -0.94 -28.17 13.70 55.49 0.76 -27.41 16 18 Si 1.08 24.86 29.92 -169.99 -5.09 19.77 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.13 2.19 3.18 -66.96 -0.21 1.97 16 23 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 24 C -0.15 -2.49 9.10 37.15 0.34 -2.15 16 25 N -0.55 -5.72 5.42 -7.02 -0.04 -5.76 16 26 H 0.42 3.36 5.56 -40.82 -0.23 3.13 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 32 H 0.06 0.66 6.23 -51.93 -0.32 0.34 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.37 9.17 6.34 -40.82 -0.26 8.91 16 36 H 0.26 7.60 6.77 -40.82 -0.28 7.33 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.05 7.09 -51.93 -0.37 0.68 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -33.21 321.90 -7.83 -41.04 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.26 Total: 9.98 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.25 Total: 0.89 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.17 Total: -66.67 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.21 -7.83 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986059798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.157 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds