Wall clock time and date at job start Mon Mar 30 2020 23:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30860 * 125.41547 * 2 1 4 4 C 1.33321 * 109.68087 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78890 * 359.97438 * 4 3 2 6 6 C 1.46769 * 126.84477 * 179.97438 * 5 4 3 7 7 O 1.21678 * 119.99894 * 353.48805 * 6 5 4 8 8 N 1.34777 * 119.99902 * 173.48411 * 6 5 4 9 9 C 1.47426 * 125.64750 * 354.45462 * 8 6 5 10 10 C 1.54913 * 104.83091 * 204.16612 * 9 8 6 11 11 C 1.55154 * 101.57834 * 322.98848 * 10 9 8 12 12 H 1.08995 * 110.72347 * 276.95995 * 11 10 9 13 13 N 1.46504 * 110.71967 * 153.86702 * 11 10 9 14 14 C 1.36936 * 119.99970 * 86.45215 * 13 11 10 15 15 H 1.08000 * 119.99789 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99972 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99706 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99953 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46944 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47022 * 59.99810 * 18 16 14 21 21 H 1.48493 * 109.46889 * 299.99712 * 18 16 14 22 22 C 1.47018 * 125.64707 * 174.49475 * 8 6 5 23 23 H 1.08998 * 109.87981 * 59.49413 * 22 8 6 24 24 C 1.52991 * 109.88424 * 298.32021 * 22 8 6 25 25 N 1.34491 * 125.42009 * 180.30734 * 2 1 3 26 26 H 0.97004 * 126.47335 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47055 * 89.98191 * 1 2 3 28 28 H 1.09001 * 109.47126 * 209.97778 * 1 2 3 29 29 H 1.08999 * 109.47206 * 329.97689 * 1 2 3 30 30 H 1.08001 * 126.10537 * 179.97438 * 4 3 2 31 31 H 1.08999 * 110.37190 * 85.32363 * 9 8 6 32 32 H 1.09000 * 110.46191 * 323.05066 * 9 8 6 33 33 H 1.09003 * 110.99975 * 204.91602 * 10 9 8 34 34 H 1.08999 * 111.00449 * 81.06617 * 10 9 8 35 35 H 0.96999 * 119.99783 * 266.45382 * 13 11 10 36 36 H 0.96993 * 120.00372 * 0.02562 * 17 16 14 37 37 H 1.08994 * 109.47305 * 302.19405 * 24 22 8 38 38 H 1.08999 * 109.46838 * 62.19337 * 24 22 8 39 39 H 1.08998 * 109.47486 * 182.19154 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4982 -0.0013 7 8 5.8998 -0.9856 -0.1219 8 7 4.6948 -2.8351 0.1315 9 6 3.4475 -3.5737 0.3999 10 6 3.9051 -4.8973 1.0622 11 6 5.2098 -5.2021 0.2798 12 1 4.9864 -5.7003 -0.6635 13 7 6.1219 -6.0141 1.0892 14 6 6.0084 -7.3787 1.0874 15 1 5.2468 -7.8564 0.4889 16 6 6.8722 -8.1481 1.8548 17 7 7.8007 -7.5658 2.5837 18 14 6.7178 -10.0097 1.8517 19 1 7.7502 -10.5934 2.7454 20 1 6.9130 -10.5203 0.4710 21 1 5.3680 -10.3952 2.3359 22 6 5.8013 -3.7981 0.0335 23 1 6.5545 -3.5755 0.7893 24 6 6.4251 -3.7338 -1.3620 25 7 2.2865 -1.0960 -0.0059 26 1 1.9850 -2.0180 -0.0105 27 1 -0.3633 0.0003 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.3978 1.3722 -0.0011 31 1 2.9197 -3.7783 -0.5316 32 1 2.8096 -3.0098 1.0805 33 1 3.1665 -5.6848 0.9123 34 1 4.1102 -4.7529 2.1229 35 1 6.8061 -5.5850 1.6264 36 1 7.8811 -6.5992 2.5850 37 1 5.6606 -3.9385 -2.1115 38 1 6.8405 -2.7400 -1.5288 39 1 7.2186 -4.4770 -1.4400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986059798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:13 Heat of formation + Delta-G solvation = 19.053281 kcal Electronic energy + Delta-G solvation = -21778.375778 eV Core-core repulsion = 18528.450489 eV Total energy + Delta-G solvation = -3249.925289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.38864 -41.17265 -38.94164 -36.37163 -34.29215 -33.29889 -32.77995 -32.31484 -30.71438 -28.33960 -26.81653 -25.20176 -24.84033 -22.87948 -22.40523 -21.44686 -20.88257 -19.51341 -18.65486 -17.72032 -17.38105 -16.87423 -16.58376 -16.20961 -15.74414 -15.38298 -15.09720 -14.97471 -14.58731 -14.46664 -14.16310 -13.88848 -13.65299 -13.41821 -13.23620 -13.16485 -12.79278 -12.75799 -12.45759 -12.23846 -11.88582 -11.81039 -11.60144 -11.32753 -11.27678 -11.10432 -10.92713 -10.03774 -9.54867 -9.17372 -8.39089 -5.35884 0.13987 1.54024 1.60862 1.67031 1.70103 1.85788 1.91727 2.15591 2.72109 3.20629 3.36989 3.42249 3.50246 3.64678 3.73852 3.97408 4.03909 4.09919 4.17647 4.21090 4.31129 4.39505 4.49464 4.56849 4.70938 4.75617 4.82309 4.87492 5.05231 5.07464 5.10937 5.14066 5.28302 5.41332 5.60340 6.19329 6.26172 6.46816 6.77953 6.86709 7.03781 7.92457 8.06216 9.11992 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.003857 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.789783 B = 7257.150998 C = 7798.815281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.248 3.752 3 N -0.526 5.526 4 C 0.061 3.939 5 C -0.098 4.098 6 C 0.606 3.394 7 O -0.567 6.567 8 N -0.608 5.608 9 C 0.092 3.908 10 C -0.143 4.143 11 C 0.177 3.823 12 H 0.074 0.926 13 N -0.741 5.741 14 C -0.327 4.327 15 H 0.077 0.923 16 C -0.104 4.104 17 N -0.977 5.977 18 Si 1.128 2.872 19 H -0.299 1.299 20 H -0.277 1.277 21 H -0.274 1.274 22 C 0.134 3.866 23 H 0.047 0.953 24 C -0.145 4.145 25 N -0.543 5.543 26 H 0.435 0.565 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.182 0.818 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.357 0.643 36 H 0.242 0.758 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.918 10.962 -7.467 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 N -0.247 5.247 4 C -0.093 4.093 5 C -0.214 4.214 6 C 0.396 3.604 7 O -0.446 6.446 8 N -0.341 5.341 9 C -0.030 4.030 10 C -0.184 4.184 11 C 0.067 3.933 12 H 0.092 0.908 13 N -0.382 5.382 14 C -0.458 4.458 15 H 0.095 0.905 16 C -0.295 4.295 17 N -0.625 5.625 18 Si 0.952 3.048 19 H -0.226 1.226 20 H -0.203 1.203 21 H -0.200 1.200 22 C 0.030 3.970 23 H 0.065 0.935 24 C -0.203 4.203 25 N -0.153 5.153 26 H 0.281 0.719 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.199 0.801 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.189 0.811 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.140 10.546 -7.081 22.145 hybrid contribution 0.601 0.498 -0.124 0.790 sum -17.539 11.044 -7.204 21.943 Atomic orbital electron populations 1.20586 0.80660 1.06222 1.05734 1.24402 0.97587 0.80884 0.98698 1.70230 1.01924 1.29770 1.22780 1.22780 0.95403 0.91425 0.99703 1.20720 0.84146 0.95390 1.21112 1.16788 0.87250 0.80075 0.76292 1.90814 1.27954 1.73091 1.52744 1.48440 1.10896 1.04590 1.70187 1.22734 0.86187 0.92688 1.01390 1.23358 0.99328 0.96155 0.99560 1.21367 0.89611 0.87959 0.94351 0.90817 1.42540 1.38323 1.03406 1.53937 1.20358 1.15976 0.83901 1.25607 0.90500 1.27200 0.95178 1.10301 0.96808 1.70998 1.36769 1.10241 1.44509 0.82629 0.76020 0.69721 0.76380 1.22566 1.20283 1.19958 1.21662 0.88761 0.88749 0.97870 0.93499 1.21937 1.01181 1.01820 0.95337 1.43715 1.04785 1.11424 1.55384 0.71883 0.87710 0.87624 0.88133 0.80085 0.87761 0.89147 0.88399 0.92670 0.81073 0.94713 0.90936 0.92845 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.25 4.23 8.12 138.20 1.12 5.35 16 3 N -0.53 -12.68 11.20 -187.39 -2.10 -14.78 16 4 C 0.06 1.61 11.67 84.10 0.98 2.60 16 5 C -0.10 -2.51 6.82 40.01 0.27 -2.24 16 6 C 0.61 19.12 7.56 86.47 0.65 19.77 16 7 O -0.57 -22.13 16.18 -4.28 -0.07 -22.20 16 8 N -0.61 -17.57 3.06 -792.63 -2.43 -19.99 16 9 C 0.09 1.91 5.27 86.86 0.46 2.37 16 10 C -0.14 -4.08 6.77 31.99 0.22 -3.87 16 11 C 0.18 6.35 3.11 46.18 0.14 6.49 16 12 H 0.07 2.58 7.84 -2.39 -0.02 2.56 16 13 N -0.74 -35.32 5.25 -317.32 -1.67 -36.99 16 14 C -0.33 -17.22 9.98 84.03 0.84 -16.38 16 15 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 16 C -0.10 -5.81 5.50 84.86 0.47 -5.34 16 17 N -0.98 -60.44 13.70 21.65 0.30 -60.14 16 18 Si 1.13 49.84 29.92 68.60 2.05 51.89 16 19 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.13 4.61 3.18 45.34 0.14 4.75 16 23 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 24 C -0.14 -4.67 9.10 71.98 0.66 -4.02 16 25 N -0.54 -9.39 5.42 -176.11 -0.95 -10.34 16 26 H 0.44 4.91 5.56 -92.71 -0.52 4.40 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 32 H 0.09 1.47 6.23 -2.39 -0.01 1.45 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.36 18.58 6.34 -92.71 -0.59 17.99 16 36 H 0.24 15.08 6.77 -92.71 -0.63 14.45 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.82 7.09 -2.39 -0.02 1.80 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -74.95 321.90 1.95 -73.00 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.12 Total: 29.81 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.70 Total: 9.75 kcal Atomic # 7 Polarization: -135.39 SS G_CDS: -6.85 Total: -142.24 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.20 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -74.95 1.95 -73.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986059798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.050 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds