Wall clock time and date at job start Mon Mar 30 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30853 * 125.42040 * 2 1 4 4 C 1.33314 * 109.68697 * 179.73871 * 3 2 1 5 5 C 1.36659 * 107.78894 * 0.37545 * 4 3 2 6 6 C 1.46765 * 126.84971 * 179.89247 * 5 4 3 7 7 O 1.21683 * 119.99421 * 353.18257 * 6 5 4 8 8 N 1.34774 * 119.99986 * 173.17982 * 6 5 4 9 9 C 1.47423 * 125.64802 * 354.45155 * 8 6 5 10 10 C 1.54917 * 104.82896 * 204.16408 * 9 8 6 11 11 C 1.55155 * 101.58306 * 322.99132 * 10 9 8 12 12 H 1.09006 * 110.87045 * 277.07214 * 11 10 9 13 13 N 1.46496 * 110.72165 * 153.86843 * 11 10 9 14 14 C 1.36930 * 120.00163 * 91.47386 * 13 11 10 15 15 H 1.07996 * 120.00468 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00054 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47038 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47128 * 300.00509 * 18 16 14 21 21 H 1.48496 * 109.46902 * 60.00200 * 18 16 14 22 22 C 1.47029 * 125.64659 * 174.49287 * 8 6 5 23 23 H 1.08991 * 109.88034 * 298.32390 * 22 8 6 24 24 C 1.52994 * 109.88106 * 59.48655 * 22 8 6 25 25 N 1.34497 * 125.41833 * 179.97438 * 2 1 3 26 26 H 0.97000 * 126.47143 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.46935 * 270.03014 * 1 2 3 28 28 H 1.09002 * 109.46574 * 30.02987 * 1 2 3 29 29 H 1.09001 * 109.46839 * 150.02667 * 1 2 3 30 30 H 1.08002 * 126.10851 * 180.27614 * 4 3 2 31 31 H 1.08994 * 110.36796 * 322.99792 * 9 8 6 32 32 H 1.09000 * 110.36676 * 85.32650 * 9 8 6 33 33 H 1.08997 * 111.00044 * 204.91668 * 10 9 8 34 34 H 1.08999 * 111.00310 * 81.06516 * 10 9 8 35 35 H 0.97005 * 119.99469 * 271.48184 * 13 11 10 36 36 H 0.97001 * 119.99987 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.47078 * 177.80765 * 24 22 8 38 38 H 1.08998 * 109.47548 * 297.80850 * 24 22 8 39 39 H 1.09005 * 109.47388 * 57.80890 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7049 0.0057 5 6 3.5977 -0.6608 0.0010 6 6 4.8029 -1.4983 0.0023 7 8 5.9000 -0.9857 -0.1170 8 7 4.6945 -2.8350 0.1357 9 6 3.4468 -3.5735 0.4027 10 6 3.9035 -4.8967 1.0664 11 6 5.2094 -5.2021 0.2862 12 1 4.9899 -5.6992 -0.6588 13 7 6.1201 -6.0136 1.0973 14 6 6.0749 -7.3798 1.0178 15 1 5.3681 -7.8592 0.3568 16 6 6.9383 -8.1488 1.7861 17 7 7.8001 -7.5646 2.5914 18 14 6.8771 -10.0126 1.6771 19 1 7.8925 -10.5955 2.5906 20 1 5.5264 -10.4874 2.0714 21 1 7.1633 -10.4365 0.2830 22 6 5.8012 -3.7983 0.0399 23 1 6.2471 -3.7529 -0.9536 24 6 6.8570 -3.4851 1.1020 25 7 2.2865 -1.0961 0.0005 26 1 1.9850 -2.0180 0.0006 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 4.3978 1.3721 0.0113 31 1 2.8096 -3.0083 1.0828 32 1 2.9204 -3.7785 -0.5295 33 1 3.1652 -5.6843 0.9159 34 1 4.1071 -4.7517 2.1273 35 1 6.7552 -5.5830 1.6909 36 1 8.4037 -8.1019 3.1280 37 1 7.6549 -4.2258 1.0506 38 1 7.2703 -2.4927 0.9220 39 1 6.3979 -3.5136 2.0903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986059801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:19 Heat of formation + Delta-G solvation = 48.836970 kcal Electronic energy + Delta-G solvation = -21829.609651 eV Core-core repulsion = 18580.975879 eV Total energy + Delta-G solvation = -3248.633772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41868 -39.86558 -37.52216 -34.45121 -33.00043 -32.21866 -31.45062 -30.85185 -29.12429 -27.42345 -25.42167 -24.00395 -23.28174 -21.83930 -21.27890 -20.05241 -19.10143 -17.82493 -17.39769 -16.31525 -16.10258 -15.56582 -15.36857 -14.64506 -14.23142 -14.07871 -13.74876 -13.69322 -13.41901 -13.12475 -12.90728 -12.76402 -12.56626 -12.22500 -11.94685 -11.71792 -11.30469 -11.04499 -10.88993 -10.58756 -10.48453 -10.35801 -10.31448 -10.12601 -9.89317 -9.66141 -9.03491 -8.77930 -8.46078 -7.12127 -5.88843 -3.19647 1.20005 2.63292 2.66850 3.01651 3.33586 3.36396 3.41402 3.42661 4.10681 4.44735 4.48986 4.68914 4.74494 4.99913 5.08214 5.12273 5.15960 5.23668 5.37722 5.42439 5.53144 5.55278 5.65150 5.69378 5.91134 5.97147 6.11501 6.18658 6.38393 6.40816 6.48233 6.60440 6.74889 6.89702 6.99026 7.52757 7.58018 7.74714 8.16209 8.29134 9.40888 9.94574 10.29596 11.33250 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034843 B = 0.003855 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.401388 B = 7262.224526 C = 7868.335408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.228 3.772 3 N -0.497 5.497 4 C 0.066 3.934 5 C -0.078 4.078 6 C 0.606 3.394 7 O -0.525 6.525 8 N -0.608 5.608 9 C 0.085 3.915 10 C -0.151 4.151 11 C 0.175 3.825 12 H 0.067 0.933 13 N -0.715 5.715 14 C -0.251 4.251 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.128 3.872 23 H 0.075 0.925 24 C -0.160 4.160 25 N -0.554 5.554 26 H 0.423 0.577 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.184 0.816 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.392 0.608 36 H 0.258 0.742 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.604 11.462 -5.082 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 N -0.217 5.217 4 C -0.088 4.088 5 C -0.194 4.194 6 C 0.394 3.606 7 O -0.401 6.401 8 N -0.342 5.342 9 C -0.038 4.038 10 C -0.193 4.193 11 C 0.062 3.938 12 H 0.085 0.915 13 N -0.358 5.358 14 C -0.381 4.381 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.212 1.212 21 H -0.211 1.211 22 C 0.025 3.975 23 H 0.093 0.907 24 C -0.218 4.218 25 N -0.163 5.163 26 H 0.266 0.734 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.201 0.799 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.230 0.770 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.226 12.395 -5.174 19.565 hybrid contribution 0.228 -2.232 0.252 2.257 sum -13.998 10.164 -4.922 17.985 Atomic orbital electron populations 1.20293 0.84336 1.04466 1.04045 1.23468 0.95908 0.81833 1.02350 1.70170 1.02129 1.28333 1.21059 1.22629 0.94710 0.91181 1.00276 1.21233 0.83734 0.95891 1.18585 1.16483 0.86873 0.80034 0.77190 1.90834 1.26077 1.72321 1.50854 1.48507 1.10410 1.04948 1.70372 1.22550 0.87165 0.94871 0.99247 1.23581 1.00851 0.93598 1.01266 1.21174 0.89298 0.88684 0.94628 0.91459 1.42650 1.41325 1.02987 1.48793 1.19196 1.16026 0.82299 1.20622 0.91071 1.24771 0.98397 0.98140 0.99154 1.69647 1.24007 1.34591 1.29411 0.86242 0.77154 0.85247 0.77338 1.21622 1.21202 1.21140 1.21956 0.87146 0.88659 0.99740 0.90732 1.22030 0.99130 1.02490 0.98146 1.43852 1.06188 1.10598 1.55668 0.73372 0.89605 0.88707 0.90472 0.79919 0.91836 0.91560 0.90261 0.90395 0.77014 0.93205 0.90002 0.91764 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.23 2.34 8.12 -155.61 -1.26 1.08 16 3 N -0.50 -6.48 11.20 -10.58 -0.12 -6.59 16 4 C 0.07 0.89 11.67 -17.48 -0.20 0.69 16 5 C -0.08 -1.07 6.82 -82.14 -0.56 -1.63 16 6 C 0.61 9.70 7.63 -12.82 -0.10 9.60 16 7 O -0.52 -9.93 15.64 5.20 0.08 -9.85 16 8 N -0.61 -9.14 3.08 -164.52 -0.51 -9.65 16 9 C 0.09 1.02 5.28 -2.53 -0.01 1.00 16 10 C -0.15 -2.28 6.77 -24.58 -0.17 -2.45 16 11 C 0.17 3.18 3.49 -66.10 -0.23 2.95 16 12 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 13 N -0.71 -16.70 4.94 -51.66 -0.25 -16.95 16 14 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 18 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.13 2.21 3.51 -66.95 -0.24 1.97 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 C -0.16 -2.97 7.92 37.15 0.29 -2.68 16 25 N -0.55 -5.74 5.42 -7.02 -0.04 -5.78 16 26 H 0.42 3.37 5.55 -40.82 -0.23 3.14 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.06 0.65 6.21 -51.93 -0.32 0.32 16 32 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.39 9.76 5.06 -40.82 -0.21 9.56 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 38 H 0.06 1.20 6.61 -51.93 -0.34 0.86 16 39 H 0.05 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -32.11 318.62 -7.88 -39.99 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.20 Total: 10.39 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.34 Total: 3.51 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.19 Total: -65.25 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.11 -7.88 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986059801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.823 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds