Wall clock time and date at job start Mon Mar 30 2020 23:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30853 * 125.42040 * 2 1 4 4 C 1.33314 * 109.68697 * 179.73871 * 3 2 1 5 5 C 1.36659 * 107.78894 * 0.37545 * 4 3 2 6 6 C 1.46765 * 126.84971 * 179.89247 * 5 4 3 7 7 O 1.21683 * 119.99421 * 353.18257 * 6 5 4 8 8 N 1.34774 * 119.99986 * 173.17982 * 6 5 4 9 9 C 1.47423 * 125.64802 * 354.45155 * 8 6 5 10 10 C 1.54917 * 104.82896 * 204.16408 * 9 8 6 11 11 C 1.55155 * 101.58306 * 322.99132 * 10 9 8 12 12 H 1.09006 * 110.87045 * 277.07214 * 11 10 9 13 13 N 1.46496 * 110.72165 * 153.86843 * 11 10 9 14 14 C 1.36930 * 120.00163 * 91.47386 * 13 11 10 15 15 H 1.07996 * 120.00468 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00054 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47038 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47128 * 300.00509 * 18 16 14 21 21 H 1.48496 * 109.46902 * 60.00200 * 18 16 14 22 22 C 1.47029 * 125.64659 * 174.49287 * 8 6 5 23 23 H 1.08991 * 109.88034 * 298.32390 * 22 8 6 24 24 C 1.52994 * 109.88106 * 59.48655 * 22 8 6 25 25 N 1.34497 * 125.41833 * 179.97438 * 2 1 3 26 26 H 0.97000 * 126.47143 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.46935 * 270.03014 * 1 2 3 28 28 H 1.09002 * 109.46574 * 30.02987 * 1 2 3 29 29 H 1.09001 * 109.46839 * 150.02667 * 1 2 3 30 30 H 1.08002 * 126.10851 * 180.27614 * 4 3 2 31 31 H 1.08994 * 110.36796 * 322.99792 * 9 8 6 32 32 H 1.09000 * 110.36676 * 85.32650 * 9 8 6 33 33 H 1.08997 * 111.00044 * 204.91668 * 10 9 8 34 34 H 1.08999 * 111.00310 * 81.06516 * 10 9 8 35 35 H 0.97005 * 119.99469 * 271.48184 * 13 11 10 36 36 H 0.97001 * 119.99987 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.47078 * 177.80765 * 24 22 8 38 38 H 1.08998 * 109.47548 * 297.80850 * 24 22 8 39 39 H 1.09005 * 109.47388 * 57.80890 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7049 0.0057 5 6 3.5977 -0.6608 0.0010 6 6 4.8029 -1.4983 0.0023 7 8 5.9000 -0.9857 -0.1170 8 7 4.6945 -2.8350 0.1357 9 6 3.4468 -3.5735 0.4027 10 6 3.9035 -4.8967 1.0664 11 6 5.2094 -5.2021 0.2862 12 1 4.9899 -5.6992 -0.6588 13 7 6.1201 -6.0136 1.0973 14 6 6.0749 -7.3798 1.0178 15 1 5.3681 -7.8592 0.3568 16 6 6.9383 -8.1488 1.7861 17 7 7.8001 -7.5646 2.5914 18 14 6.8771 -10.0126 1.6771 19 1 7.8925 -10.5955 2.5906 20 1 5.5264 -10.4874 2.0714 21 1 7.1633 -10.4365 0.2830 22 6 5.8012 -3.7983 0.0399 23 1 6.2471 -3.7529 -0.9536 24 6 6.8570 -3.4851 1.1020 25 7 2.2865 -1.0961 0.0005 26 1 1.9850 -2.0180 0.0006 27 1 -0.3633 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 4.3978 1.3721 0.0113 31 1 2.8096 -3.0083 1.0828 32 1 2.9204 -3.7785 -0.5295 33 1 3.1652 -5.6843 0.9159 34 1 4.1071 -4.7517 2.1273 35 1 6.7552 -5.5830 1.6909 36 1 8.4037 -8.1019 3.1280 37 1 7.6549 -4.2258 1.0506 38 1 7.2703 -2.4927 0.9220 39 1 6.3979 -3.5136 2.0903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986059801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:18 Heat of formation + Delta-G solvation = 27.000268 kcal Electronic energy + Delta-G solvation = -21830.556561 eV Core-core repulsion = 18580.975879 eV Total energy + Delta-G solvation = -3249.580682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.34316 -41.13688 -38.88567 -36.07571 -34.19133 -33.29195 -32.71189 -32.15689 -30.69037 -28.30609 -26.90794 -25.62092 -24.63933 -22.96260 -22.28396 -21.02290 -20.49394 -19.48626 -18.74767 -17.41125 -17.26504 -16.80914 -16.64597 -16.15097 -15.71715 -15.33938 -15.02404 -14.90531 -14.58123 -14.26421 -14.00303 -13.69807 -13.48254 -13.29447 -13.20271 -13.14011 -12.95347 -12.85279 -12.59763 -12.13283 -12.11731 -11.66572 -11.62476 -11.49347 -11.23573 -11.02155 -10.92103 -9.95529 -9.49682 -9.03732 -7.94184 -5.23847 0.19455 1.49816 1.52305 1.58210 1.62707 1.71665 1.98050 2.21463 2.57568 3.26597 3.38329 3.50654 3.60121 3.81074 3.84908 4.05292 4.09025 4.20971 4.27533 4.29700 4.45538 4.51668 4.61287 4.61947 4.77968 4.78570 4.85775 4.98935 5.13494 5.14339 5.18754 5.24398 5.42710 5.46540 5.53867 6.24279 6.26726 6.34394 6.82978 6.94128 7.34411 8.07218 8.30475 9.29161 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034843 B = 0.003855 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.401388 B = 7262.224526 C = 7868.335408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.247 3.753 3 N -0.527 5.527 4 C 0.059 3.941 5 C -0.096 4.096 6 C 0.605 3.395 7 O -0.565 6.565 8 N -0.608 5.608 9 C 0.091 3.909 10 C -0.141 4.141 11 C 0.167 3.833 12 H 0.076 0.924 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.084 0.916 16 C -0.074 4.074 17 N -0.971 5.971 18 Si 0.973 3.027 19 H -0.302 1.302 20 H -0.275 1.275 21 H -0.278 1.278 22 C 0.134 3.866 23 H 0.071 0.929 24 C -0.146 4.146 25 N -0.542 5.542 26 H 0.435 0.565 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.182 0.818 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.380 0.620 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.197 11.227 -6.114 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 N -0.248 5.248 4 C -0.095 4.095 5 C -0.212 4.212 6 C 0.395 3.605 7 O -0.444 6.444 8 N -0.341 5.341 9 C -0.031 4.031 10 C -0.182 4.182 11 C 0.057 3.943 12 H 0.094 0.906 13 N -0.373 5.373 14 C -0.374 4.374 15 H 0.102 0.898 16 C -0.266 4.266 17 N -0.621 5.621 18 Si 0.803 3.197 19 H -0.228 1.228 20 H -0.201 1.201 21 H -0.204 1.204 22 C 0.030 3.970 23 H 0.089 0.911 24 C -0.205 4.205 25 N -0.153 5.153 26 H 0.282 0.718 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.199 0.801 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.216 0.784 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.905 12.150 -6.244 22.521 hybrid contribution 1.240 -2.045 0.527 2.448 sum -16.665 10.106 -5.717 20.311 Atomic orbital electron populations 1.20576 0.80733 1.06216 1.05643 1.24381 0.97564 0.80929 0.98878 1.70213 1.01972 1.29815 1.22782 1.22769 0.95360 0.91479 0.99884 1.20764 0.84190 0.95406 1.20854 1.16773 0.87189 0.80154 0.76390 1.90807 1.27815 1.73066 1.52743 1.48468 1.10832 1.04625 1.70130 1.22739 0.86156 0.92900 1.01351 1.23365 0.99225 0.95986 0.99657 1.21398 0.89856 0.88350 0.94721 0.90575 1.42828 1.42330 1.02737 1.49411 1.19646 1.14892 0.83621 1.19207 0.89792 1.25563 0.98923 1.02313 0.99839 1.69818 1.25457 1.35741 1.31102 0.85216 0.77050 0.80364 0.77120 1.22837 1.20084 1.20437 1.21709 0.87535 0.88939 0.98804 0.91083 1.21850 0.99000 1.01324 0.98282 1.43728 1.04810 1.11413 1.55339 0.71849 0.87897 0.88142 0.87567 0.80119 0.89343 0.87783 0.88336 0.92530 0.78402 0.94094 0.92228 0.92316 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 71.24 0.75 0.25 16 2 C 0.25 4.23 8.12 138.20 1.12 5.35 16 3 N -0.53 -12.77 11.20 -187.40 -2.10 -14.87 16 4 C 0.06 1.57 11.67 84.10 0.98 2.55 16 5 C -0.10 -2.46 6.82 40.01 0.27 -2.19 16 6 C 0.60 18.96 7.63 86.47 0.66 19.62 16 7 O -0.57 -21.83 15.64 -4.30 -0.07 -21.90 16 8 N -0.61 -17.36 3.08 -792.63 -2.44 -19.80 16 9 C 0.09 1.84 5.28 86.86 0.46 2.30 16 10 C -0.14 -3.92 6.77 31.99 0.22 -3.70 16 11 C 0.17 5.89 3.49 46.18 0.16 6.05 16 12 H 0.08 2.57 8.09 -2.38 -0.02 2.55 16 13 N -0.73 -34.36 4.94 -317.34 -1.57 -35.93 16 14 C -0.24 -12.52 9.96 84.04 0.84 -11.68 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 17 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 18 Si 0.97 44.24 29.55 68.60 2.03 46.27 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.13 4.59 3.51 45.34 0.16 4.75 16 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 24 C -0.15 -5.66 7.92 71.98 0.57 -5.09 16 25 N -0.54 -9.39 5.42 -176.11 -0.96 -10.35 16 26 H 0.44 4.90 5.55 -92.71 -0.51 4.38 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.18 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.09 1.41 6.21 -2.39 -0.01 1.40 16 32 H 0.10 1.43 7.88 -2.39 -0.02 1.41 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.38 19.57 5.06 -92.70 -0.47 19.10 16 36 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.06 2.55 6.76 -2.39 -0.02 2.53 16 38 H 0.06 2.31 6.61 -2.39 -0.02 2.29 16 39 H 0.05 1.83 8.03 -2.38 -0.02 1.81 16 Total: -1.00 -71.92 318.62 1.93 -69.98 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.10 Total: 29.71 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.65 Total: 14.60 kcal Atomic # 7 Polarization: -131.89 SS G_CDS: -6.78 Total: -138.67 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.90 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.92 1.93 -69.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986059801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.984 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds