Wall clock time and date at job start Mon Mar 30 2020 23:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30855 * 125.41901 * 2 1 4 4 C 1.33313 * 109.68537 * 179.97438 * 3 2 1 5 5 C 1.36660 * 107.78670 * 359.97438 * 4 3 2 6 6 C 1.46770 * 126.84613 * 180.02562 * 5 4 3 7 7 O 1.21676 * 120.00035 * 352.29632 * 6 5 4 8 8 N 1.34774 * 120.00026 * 172.30173 * 6 5 4 9 9 C 1.47427 * 125.64869 * 2.21309 * 8 6 5 10 10 C 1.54910 * 104.83249 * 204.09377 * 9 8 6 11 11 H 1.08992 * 111.00438 * 204.91712 * 10 9 8 12 12 N 1.46507 * 111.00234 * 81.06495 * 10 9 8 13 13 C 1.36931 * 119.99978 * 86.45836 * 12 10 9 14 14 H 1.08000 * 120.00220 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00048 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99896 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00221 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47107 * 59.99712 * 17 15 13 19 19 H 1.48502 * 109.47184 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 299.99735 * 17 15 13 21 21 C 1.55160 * 101.57899 * 322.99233 * 10 9 8 22 22 C 1.47020 * 125.64945 * 181.90823 * 8 6 5 23 23 H 1.09001 * 109.88168 * 59.55550 * 22 8 6 24 24 C 1.53000 * 109.88148 * 298.39228 * 22 8 6 25 25 N 1.34489 * 125.41563 * 179.68631 * 2 1 3 26 26 H 0.97001 * 126.47912 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46939 * 90.03148 * 1 2 3 28 28 H 1.09002 * 109.47221 * 330.03384 * 1 2 3 29 29 H 1.08997 * 109.47264 * 210.03284 * 1 2 3 30 30 H 1.08001 * 126.10773 * 179.97438 * 4 3 2 31 31 H 1.09003 * 110.36539 * 322.93308 * 9 8 6 32 32 H 1.08994 * 110.36508 * 85.14409 * 9 8 6 33 33 H 0.97005 * 119.99956 * 266.45105 * 12 10 9 34 34 H 0.97006 * 119.99980 * 179.97438 * 16 15 13 35 35 H 1.09007 * 110.71861 * 153.86887 * 21 10 9 36 36 H 1.08994 * 110.71670 * 276.95397 * 21 10 9 37 37 H 1.09002 * 109.47052 * 61.45076 * 24 22 8 38 38 H 1.09001 * 109.47202 * 181.45238 * 24 22 8 39 39 H 1.08997 * 109.47130 * 301.45258 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5975 -0.6608 0.0015 6 6 4.8028 -1.4983 0.0029 7 8 5.8984 -0.9880 -0.1379 8 7 4.6961 -2.8326 0.1601 9 6 3.4347 -3.5839 0.2937 10 6 3.8239 -4.8821 1.0439 11 1 3.1196 -5.6850 0.8265 12 7 3.9192 -4.6464 2.4867 13 6 2.8007 -4.7397 3.2711 14 1 1.8481 -4.9866 2.8261 15 6 2.8910 -4.5158 4.6381 16 7 4.0518 -4.2143 5.1803 17 14 1.3651 -4.6423 5.7080 18 1 0.8006 -6.0120 5.6053 19 1 1.7263 -4.3609 7.1207 20 1 0.3552 -3.6551 5.2488 21 6 5.2189 -5.1864 0.4367 22 6 5.8181 -3.7808 0.2204 23 1 6.4736 -3.5270 1.0535 24 6 6.6024 -3.7429 -1.0928 25 7 2.2864 -1.0960 0.0060 26 1 1.9849 -2.0180 0.0114 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3634 0.8903 0.5133 29 1 -0.3633 -0.8897 0.5143 30 1 4.3978 1.3722 0.0003 31 1 2.7121 -3.0116 0.8756 32 1 3.0275 -3.8194 -0.6895 33 1 4.7748 -4.4243 2.8864 34 1 4.1148 -4.0575 6.1356 35 1 5.8257 -5.7637 1.1344 36 1 5.1198 -5.7127 -0.5126 37 1 7.0115 -2.7438 -1.2430 38 1 7.4166 -4.4664 -1.0507 39 1 5.9379 -3.9916 -1.9202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988364613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:24 Heat of formation + Delta-G solvation = 43.015040 kcal Electronic energy + Delta-G solvation = -22325.685103 eV Core-core repulsion = 19076.798874 eV Total energy + Delta-G solvation = -3248.886229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12882 -39.68930 -37.36696 -34.12402 -33.05525 -31.99097 -31.47664 -30.97275 -28.60437 -27.32830 -25.73028 -23.98231 -23.30750 -21.35562 -20.99206 -19.88322 -19.49422 -17.50726 -17.14249 -16.40529 -15.89568 -15.49242 -14.87229 -14.67975 -14.00060 -13.94126 -13.79670 -13.43341 -13.27965 -13.01892 -12.92502 -12.62688 -12.48129 -12.34309 -11.98002 -11.83174 -11.27548 -11.07803 -10.90629 -10.78484 -10.45701 -10.24409 -10.14421 -10.02456 -9.85392 -9.69463 -9.16836 -8.54817 -8.20752 -7.18286 -5.94182 -3.26187 1.49122 2.91433 2.96318 3.26674 3.31355 3.35702 3.38690 3.59583 4.39088 4.41799 4.66874 4.92266 4.93060 5.13794 5.21298 5.31075 5.35104 5.40196 5.45695 5.54811 5.59773 5.62465 5.72091 5.77746 5.83181 5.95986 5.97439 6.07584 6.25836 6.33600 6.41381 6.55865 6.62605 6.71216 7.29759 7.49344 7.73011 8.02432 8.22328 8.37246 9.34256 9.88220 10.22557 11.27229 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.007313 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.318915 B = 3827.663083 C = 5364.472750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.227 3.773 3 N -0.499 5.499 4 C 0.061 3.939 5 C -0.074 4.074 6 C 0.610 3.390 7 O -0.537 6.537 8 N -0.596 5.596 9 C 0.054 3.946 10 C 0.172 3.828 11 H 0.073 0.927 12 N -0.710 5.710 13 C -0.257 4.257 14 H 0.071 0.929 15 C -0.004 4.004 16 N -0.924 5.924 17 Si 0.908 3.092 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C -0.137 4.137 22 C 0.140 3.860 23 H 0.077 0.923 24 C -0.160 4.160 25 N -0.548 5.548 26 H 0.425 0.575 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.387 0.613 34 H 0.259 0.741 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 1.222 -13.094 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.037 4.037 3 N -0.219 5.219 4 C -0.092 4.092 5 C -0.190 4.190 6 C 0.398 3.602 7 O -0.415 6.415 8 N -0.329 5.329 9 C -0.073 4.073 10 C 0.059 3.941 11 H 0.091 0.909 12 N -0.350 5.350 13 C -0.388 4.388 14 H 0.089 0.911 15 C -0.202 4.202 16 N -0.570 5.570 17 Si 0.738 3.262 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.212 1.212 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.095 0.905 24 C -0.218 4.218 25 N -0.159 5.159 26 H 0.270 0.730 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.198 0.802 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.496 2.313 -13.039 13.697 hybrid contribution -0.446 -1.182 0.910 1.557 sum -3.942 1.131 -12.130 12.805 Atomic orbital electron populations 1.20279 0.84502 1.04660 1.03673 1.23418 0.95886 0.81950 1.02421 1.70130 1.02079 1.28419 1.21282 1.22552 0.94688 0.91138 1.00860 1.21131 0.83838 0.95763 1.18313 1.16459 0.86850 0.80059 0.76786 1.90789 1.26399 1.72642 1.51653 1.48277 1.08703 1.05047 1.70851 1.23647 0.86726 0.97785 0.99167 1.21286 0.94345 0.92579 0.85875 0.90881 1.42332 1.09732 1.83024 0.99869 1.19124 0.88522 1.41862 0.89298 0.91078 1.24792 0.96876 1.01609 0.96898 1.69651 1.22983 1.52786 1.11577 0.86278 0.82169 0.77825 0.79904 1.21047 1.21528 1.21197 1.23045 0.98162 0.94960 1.01394 1.21504 0.88162 0.88527 0.98075 0.90472 1.22142 0.99950 1.03035 0.96680 1.44039 1.06136 1.10783 1.54931 0.72950 0.89871 0.88793 0.90310 0.80159 0.90626 0.92460 0.77865 0.93131 0.89484 0.90559 0.91317 0.91817 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.51 36.01 0.38 -0.31 16 2 C 0.23 3.21 8.12 -155.62 -1.26 1.95 16 3 N -0.50 -8.19 11.20 -10.59 -0.12 -8.31 16 4 C 0.06 1.04 11.67 -17.48 -0.20 0.83 16 5 C -0.07 -1.27 6.85 -82.14 -0.56 -1.84 16 6 C 0.61 11.32 7.62 -12.81 -0.10 11.22 16 7 O -0.54 -11.07 15.88 5.21 0.08 -10.99 16 8 N -0.60 -10.08 3.06 -164.51 -0.50 -10.58 16 9 C 0.05 0.83 5.22 -2.53 -0.01 0.82 16 10 C 0.17 2.93 3.69 -65.78 -0.24 2.69 16 11 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 12 N -0.71 -16.15 5.27 -51.35 -0.27 -16.42 16 13 C -0.26 -6.54 9.98 -15.06 -0.15 -6.69 16 14 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 15 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 16 N -0.92 -26.92 13.06 55.49 0.72 -26.20 16 17 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.14 -1.96 6.05 -24.89 -0.15 -2.11 16 22 C 0.14 2.20 3.46 -66.95 -0.23 1.97 16 23 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 24 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 25 N -0.55 -8.03 5.45 -7.02 -0.04 -8.07 16 26 H 0.42 5.47 5.38 -40.82 -0.22 5.25 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.18 2.77 8.06 -52.49 -0.42 2.34 16 31 H 0.08 1.27 5.49 -51.93 -0.29 0.98 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 9.77 7.82 -40.82 -0.32 9.45 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 37 H 0.07 1.06 6.82 -51.93 -0.35 0.70 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -32.05 323.38 -7.93 -39.97 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.36 Total: 12.93 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -2.29 Total: 6.51 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.21 Total: -69.57 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.05 -7.93 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988364613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.989 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds