Wall clock time and date at job start Mon Mar 30 2020 23:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30855 * 125.41901 * 2 1 4 4 C 1.33313 * 109.68537 * 179.97438 * 3 2 1 5 5 C 1.36660 * 107.78670 * 359.97438 * 4 3 2 6 6 C 1.46770 * 126.84613 * 180.02562 * 5 4 3 7 7 O 1.21676 * 120.00035 * 352.29632 * 6 5 4 8 8 N 1.34774 * 120.00026 * 172.30173 * 6 5 4 9 9 C 1.47427 * 125.64869 * 2.21309 * 8 6 5 10 10 C 1.54910 * 104.83249 * 204.09377 * 9 8 6 11 11 H 1.08992 * 111.00438 * 204.91712 * 10 9 8 12 12 N 1.46507 * 111.00234 * 81.06495 * 10 9 8 13 13 C 1.36931 * 119.99978 * 86.45836 * 12 10 9 14 14 H 1.08000 * 120.00220 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00048 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99896 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00221 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47107 * 59.99712 * 17 15 13 19 19 H 1.48502 * 109.47184 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 299.99735 * 17 15 13 21 21 C 1.55160 * 101.57899 * 322.99233 * 10 9 8 22 22 C 1.47020 * 125.64945 * 181.90823 * 8 6 5 23 23 H 1.09001 * 109.88168 * 59.55550 * 22 8 6 24 24 C 1.53000 * 109.88148 * 298.39228 * 22 8 6 25 25 N 1.34489 * 125.41563 * 179.68631 * 2 1 3 26 26 H 0.97001 * 126.47912 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46939 * 90.03148 * 1 2 3 28 28 H 1.09002 * 109.47221 * 330.03384 * 1 2 3 29 29 H 1.08997 * 109.47264 * 210.03284 * 1 2 3 30 30 H 1.08001 * 126.10773 * 179.97438 * 4 3 2 31 31 H 1.09003 * 110.36539 * 322.93308 * 9 8 6 32 32 H 1.08994 * 110.36508 * 85.14409 * 9 8 6 33 33 H 0.97005 * 119.99956 * 266.45105 * 12 10 9 34 34 H 0.97006 * 119.99980 * 179.97438 * 16 15 13 35 35 H 1.09007 * 110.71861 * 153.86887 * 21 10 9 36 36 H 1.08994 * 110.71670 * 276.95397 * 21 10 9 37 37 H 1.09002 * 109.47052 * 61.45076 * 24 22 8 38 38 H 1.09001 * 109.47202 * 181.45238 * 24 22 8 39 39 H 1.08997 * 109.47130 * 301.45258 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5975 -0.6608 0.0015 6 6 4.8028 -1.4983 0.0029 7 8 5.8984 -0.9880 -0.1379 8 7 4.6961 -2.8326 0.1601 9 6 3.4347 -3.5839 0.2937 10 6 3.8239 -4.8821 1.0439 11 1 3.1196 -5.6850 0.8265 12 7 3.9192 -4.6464 2.4867 13 6 2.8007 -4.7397 3.2711 14 1 1.8481 -4.9866 2.8261 15 6 2.8910 -4.5158 4.6381 16 7 4.0518 -4.2143 5.1803 17 14 1.3651 -4.6423 5.7080 18 1 0.8006 -6.0120 5.6053 19 1 1.7263 -4.3609 7.1207 20 1 0.3552 -3.6551 5.2488 21 6 5.2189 -5.1864 0.4367 22 6 5.8181 -3.7808 0.2204 23 1 6.4736 -3.5270 1.0535 24 6 6.6024 -3.7429 -1.0928 25 7 2.2864 -1.0960 0.0060 26 1 1.9849 -2.0180 0.0114 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3634 0.8903 0.5133 29 1 -0.3633 -0.8897 0.5143 30 1 4.3978 1.3722 0.0003 31 1 2.7121 -3.0116 0.8756 32 1 3.0275 -3.8194 -0.6895 33 1 4.7748 -4.4243 2.8864 34 1 4.1148 -4.0575 6.1356 35 1 5.8257 -5.7637 1.1344 36 1 5.1198 -5.7127 -0.5126 37 1 7.0115 -2.7438 -1.2430 38 1 7.4166 -4.4664 -1.0507 39 1 5.9379 -3.9916 -1.9202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988364613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:23 Heat of formation + Delta-G solvation = 21.000517 kcal Electronic energy + Delta-G solvation = -22326.639725 eV Core-core repulsion = 19076.798874 eV Total energy + Delta-G solvation = -3249.840851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.33357 -41.02331 -38.79950 -35.86031 -34.29223 -33.22629 -33.05550 -32.11099 -30.20809 -28.41971 -26.92290 -25.78647 -24.65936 -22.56909 -22.32439 -21.13805 -20.74855 -19.31063 -18.50915 -17.77487 -17.17445 -16.77326 -16.44531 -16.09417 -15.47956 -15.38545 -15.18394 -14.83187 -14.45091 -14.40901 -14.14048 -13.58236 -13.47703 -13.31632 -13.25471 -13.17029 -12.88946 -12.73905 -12.34679 -12.30469 -12.10514 -11.69009 -11.61309 -11.48217 -11.23488 -11.06411 -10.99689 -9.91418 -9.47524 -9.03144 -7.96620 -5.26309 0.22203 1.46513 1.48361 1.54636 1.67303 1.76578 2.04061 2.25286 2.53536 3.28985 3.34241 3.49848 3.73046 3.76977 3.85709 4.05701 4.08870 4.24470 4.31248 4.40977 4.51223 4.56323 4.63268 4.69713 4.73768 4.83834 4.86311 5.05050 5.07496 5.12912 5.17564 5.31378 5.40409 5.47152 5.51563 6.22095 6.23370 6.38974 6.81601 6.98765 7.30470 8.04905 8.26577 9.26380 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.007313 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.318915 B = 3827.663083 C = 5364.472750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.238 3.762 3 N -0.524 5.524 4 C 0.052 3.948 5 C -0.098 4.098 6 C 0.602 3.398 7 O -0.571 6.571 8 N -0.598 5.598 9 C 0.060 3.940 10 C 0.160 3.840 11 H 0.095 0.905 12 N -0.726 5.726 13 C -0.239 4.239 14 H 0.089 0.911 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.306 1.306 20 H -0.277 1.277 21 C -0.121 4.121 22 C 0.134 3.866 23 H 0.043 0.957 24 C -0.148 4.148 25 N -0.543 5.543 26 H 0.433 0.567 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.183 0.817 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -0.092 -15.144 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.026 4.026 3 N -0.245 5.245 4 C -0.102 4.102 5 C -0.214 4.214 6 C 0.391 3.609 7 O -0.451 6.451 8 N -0.329 5.329 9 C -0.065 4.065 10 C 0.050 3.950 11 H 0.113 0.887 12 N -0.364 5.364 13 C -0.371 4.371 14 H 0.107 0.893 15 C -0.268 4.268 16 N -0.620 5.620 17 Si 0.798 3.202 18 H -0.199 1.199 19 H -0.233 1.233 20 H -0.203 1.203 21 C -0.159 4.159 22 C 0.031 3.969 23 H 0.061 0.939 24 C -0.206 4.206 25 N -0.154 5.154 26 H 0.280 0.720 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.200 0.800 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.948 0.949 -15.159 16.312 hybrid contribution 0.269 -0.775 1.442 1.659 sum -5.679 0.174 -13.717 14.847 Atomic orbital electron populations 1.20548 0.80914 1.05807 1.05787 1.24382 0.97656 0.81126 0.99478 1.70162 1.01958 1.29622 1.22776 1.22750 0.95368 0.91457 1.00634 1.20988 0.84520 0.95735 1.20153 1.16711 0.86920 0.80652 0.76585 1.90757 1.27660 1.73317 1.53382 1.48381 1.09684 1.04824 1.70005 1.23639 0.85867 0.96047 1.00996 1.21640 0.96640 0.93740 0.82969 0.88722 1.42554 1.08268 1.83201 1.02352 1.19632 0.89777 1.38223 0.89439 0.89270 1.25570 0.99209 1.03336 0.98665 1.69829 1.25180 1.56067 1.10943 0.85294 0.79286 0.78299 0.77369 1.19866 1.23290 1.20274 1.22995 0.96028 0.94031 1.02885 1.21614 0.87943 0.89110 0.98235 0.93859 1.22037 1.00554 1.02292 0.95731 1.43976 1.05166 1.11410 1.54828 0.71954 0.87142 0.88216 0.88530 0.79965 0.91923 0.88013 0.79915 0.94336 0.90195 0.86483 0.93791 0.89612 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.51 71.24 0.75 -0.36 16 2 C 0.24 6.25 8.12 138.20 1.12 7.37 16 3 N -0.52 -16.81 11.20 -187.40 -2.10 -18.91 16 4 C 0.05 1.78 11.67 84.10 0.98 2.76 16 5 C -0.10 -3.33 6.85 40.01 0.27 -3.06 16 6 C 0.60 22.54 7.62 86.47 0.66 23.20 16 7 O -0.57 -24.37 15.88 -4.27 -0.07 -24.44 16 8 N -0.60 -19.62 3.06 -792.62 -2.43 -22.05 16 9 C 0.06 1.69 5.22 86.85 0.45 2.14 16 10 C 0.16 5.03 3.69 46.38 0.17 5.20 16 11 H 0.10 2.63 8.13 -2.39 -0.02 2.61 16 12 N -0.73 -32.48 5.27 -316.37 -1.67 -34.15 16 13 C -0.24 -11.87 9.98 84.03 0.84 -11.03 16 14 H 0.09 4.02 7.83 -2.91 -0.02 4.00 16 15 C -0.08 -4.10 5.50 84.86 0.47 -3.63 16 16 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 17 Si 0.97 43.76 29.55 68.60 2.03 45.79 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 21 C -0.12 -3.14 6.05 31.78 0.19 -2.95 16 22 C 0.13 4.09 3.46 45.34 0.16 4.24 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 C -0.15 -3.74 9.11 71.98 0.66 -3.09 16 25 N -0.54 -14.94 5.45 -176.11 -0.96 -15.90 16 26 H 0.43 10.00 5.38 -92.71 -0.50 9.50 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.18 5.85 8.06 -2.91 -0.02 5.83 16 31 H 0.06 1.95 5.49 -2.39 -0.01 1.94 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.37 19.00 7.82 -92.70 -0.72 18.28 16 34 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 35 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 36 H 0.12 2.14 7.85 -2.39 -0.02 2.12 16 37 H 0.04 1.34 6.82 -2.39 -0.02 1.32 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.03 323.38 1.66 -70.36 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.14 Total: 36.39 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.72 Total: 20.78 kcal Atomic # 7 Polarization: -142.02 SS G_CDS: -6.87 Total: -148.89 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.07 Total: -24.44 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -72.03 1.66 -70.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988364613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.363 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds