Wall clock time and date at job start Mon Mar 30 2020 23:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30853 * 125.41927 * 2 1 4 4 C 1.33315 * 109.68673 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78971 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84970 * 179.97438 * 5 4 3 7 7 O 1.21678 * 119.99910 * 353.49053 * 6 5 4 8 8 N 1.34777 * 119.99763 * 173.48548 * 6 5 4 9 9 C 1.47420 * 125.65252 * 354.51214 * 8 6 5 10 10 C 1.54911 * 104.83135 * 204.08156 * 9 8 6 11 11 H 1.08998 * 111.03964 * 81.07931 * 10 9 8 12 12 N 1.46501 * 111.00238 * 204.91859 * 10 9 8 13 13 C 1.36946 * 119.99446 * 267.47101 * 12 10 9 14 14 H 1.07996 * 120.00332 * 359.72003 * 13 12 10 15 15 C 1.38813 * 119.99845 * 179.72607 * 13 12 10 16 16 N 1.31626 * 119.99972 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00160 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47023 * 89.99575 * 17 15 13 19 19 H 1.48502 * 109.47233 * 209.99842 * 17 15 13 20 20 H 1.48503 * 109.46859 * 329.99938 * 17 15 13 21 21 C 1.55160 * 101.58130 * 322.98537 * 10 9 8 22 22 C 1.47023 * 125.64420 * 174.45109 * 8 6 5 23 23 H 1.09007 * 110.01084 * 59.50083 * 22 8 6 24 24 C 1.53002 * 109.88636 * 298.40911 * 22 8 6 25 25 N 1.34499 * 125.41906 * 180.32328 * 2 1 3 26 26 H 0.97002 * 126.46898 * 359.97216 * 25 2 1 27 27 H 1.08994 * 109.47242 * 89.97341 * 1 2 3 28 28 H 1.09006 * 109.46824 * 209.97190 * 1 2 3 29 29 H 1.09000 * 109.47057 * 329.97359 * 1 2 3 30 30 H 1.08004 * 126.10790 * 180.02562 * 4 3 2 31 31 H 1.09002 * 110.36816 * 85.24392 * 9 8 6 32 32 H 1.08997 * 110.36348 * 322.91625 * 9 8 6 33 33 H 0.96996 * 120.00890 * 87.18981 * 12 10 9 34 34 H 0.96994 * 119.99964 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.71754 * 153.86548 * 21 10 9 36 36 H 1.08993 * 110.72095 * 277.13943 * 21 10 9 37 37 H 1.08996 * 109.47011 * 302.18876 * 24 22 8 38 38 H 1.08998 * 109.47136 * 62.19317 * 24 22 8 39 39 H 1.09005 * 109.47025 * 182.18822 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.8998 -0.9856 -0.1219 8 7 4.6946 -2.8351 0.1315 9 6 3.4472 -3.5739 0.3986 10 6 3.9045 -4.8983 1.0594 11 1 4.1092 -4.7559 2.1205 12 7 2.9118 -5.9564 0.8564 13 6 1.9367 -6.1694 1.7941 14 1 1.9022 -5.5604 2.6853 15 6 0.9927 -7.1683 1.5991 16 7 1.0344 -7.9103 0.5128 17 14 -0.3370 -7.4593 2.8784 18 1 -1.5214 -6.6218 2.5607 19 1 -0.7272 -8.8921 2.8697 20 1 0.1806 -7.0953 4.2219 21 6 5.2093 -5.2025 0.2770 22 6 5.8010 -3.7983 0.0326 23 1 6.5562 -3.5777 0.7871 24 6 6.4253 -3.7324 -1.3628 25 7 2.2865 -1.0961 -0.0062 26 1 1.9849 -2.0180 -0.0110 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 4.3978 1.3722 -0.0003 31 1 2.9197 -3.7773 -0.5333 32 1 2.8109 -3.0097 1.0805 33 1 2.9427 -6.5035 0.0561 34 1 0.3746 -8.6080 0.3764 35 1 5.8876 -5.8074 0.8787 36 1 4.9858 -5.6967 -0.6684 37 1 5.6610 -3.9361 -2.1127 38 1 6.8410 -2.7384 -1.5282 39 1 7.2187 -4.4757 -1.4413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988364617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:26 Heat of formation + Delta-G solvation = 37.501089 kcal Electronic energy + Delta-G solvation = -21947.884046 eV Core-core repulsion = 18698.758713 eV Total energy + Delta-G solvation = -3249.125332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.25426 -39.78898 -37.45865 -34.38420 -33.12846 -32.09430 -31.57943 -31.08950 -28.61580 -27.42035 -25.70099 -24.19499 -23.18656 -21.44273 -20.87900 -20.17328 -19.60128 -17.57638 -17.36218 -16.45473 -16.01769 -15.57006 -15.19058 -14.56479 -14.16475 -13.94422 -13.82418 -13.49246 -13.33437 -13.12231 -12.84057 -12.80567 -12.54194 -12.47830 -12.25085 -11.80966 -11.31991 -11.17224 -10.94442 -10.77975 -10.47646 -10.38935 -10.20683 -10.13983 -9.93490 -9.85078 -9.19524 -8.69984 -8.35987 -7.27872 -6.01190 -3.33580 1.33349 2.78753 2.81763 3.12262 3.27685 3.34965 3.36101 3.41314 4.27974 4.37205 4.58176 4.84711 4.90199 5.05909 5.12407 5.25067 5.32059 5.35096 5.39520 5.47316 5.51225 5.63767 5.67377 5.72817 5.78517 5.85402 5.93563 6.01497 6.19131 6.28452 6.30263 6.48041 6.57077 6.63417 7.18228 7.47585 7.56834 7.89086 8.15232 8.19717 9.28160 9.79777 10.14977 11.20236 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.005824 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.489851 B = 4806.127182 C = 6460.308540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.233 3.767 3 N -0.500 5.500 4 C 0.064 3.936 5 C -0.083 4.083 6 C 0.608 3.392 7 O -0.536 6.536 8 N -0.609 5.609 9 C 0.059 3.941 10 C 0.176 3.824 11 H 0.071 0.929 12 N -0.710 5.710 13 C -0.257 4.257 14 H 0.073 0.927 15 C -0.004 4.004 16 N -0.927 5.927 17 Si 0.908 3.092 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.280 1.280 21 C -0.137 4.137 22 C 0.140 3.860 23 H 0.076 0.924 24 C -0.161 4.161 25 N -0.549 5.549 26 H 0.428 0.572 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.182 0.818 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.388 0.612 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 10.320 -2.279 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 N -0.220 5.220 4 C -0.090 4.090 5 C -0.199 4.199 6 C 0.397 3.603 7 O -0.414 6.414 8 N -0.343 5.343 9 C -0.067 4.067 10 C 0.063 3.937 11 H 0.089 0.911 12 N -0.349 5.349 13 C -0.388 4.388 14 H 0.091 0.909 15 C -0.201 4.201 16 N -0.573 5.573 17 Si 0.739 3.261 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.206 1.206 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.094 0.906 24 C -0.219 4.219 25 N -0.159 5.159 26 H 0.273 0.727 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.199 0.801 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.223 0.777 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.414 11.375 -2.201 12.078 hybrid contribution -0.724 -1.678 0.347 1.860 sum 2.690 9.696 -1.854 10.232 Atomic orbital electron populations 1.20321 0.84304 1.04687 1.04069 1.23479 0.95975 0.81795 1.01878 1.70163 1.02048 1.28388 1.21403 1.22584 0.94742 0.91085 1.00607 1.21133 0.83901 0.95767 1.19115 1.16517 0.86873 0.80109 0.76821 1.90801 1.26249 1.72670 1.51633 1.48507 1.10921 1.04716 1.70108 1.23705 0.86190 0.96487 1.00362 1.21254 0.88428 0.86908 0.97110 0.91083 1.42341 1.31344 1.36314 1.24922 1.19249 1.04967 1.14454 1.00085 0.90924 1.24786 0.99441 0.98216 0.97704 1.69656 1.37534 1.23365 1.26767 0.86187 0.81778 0.77358 0.80812 1.21506 1.21545 1.20566 1.23059 0.98331 0.94339 1.01878 1.21543 0.88836 0.88193 0.97772 0.90567 1.22131 1.00857 1.02741 0.96150 1.43967 1.06082 1.11048 1.54761 0.72728 0.89640 0.90082 0.88749 0.80091 0.91229 0.91645 0.77738 0.93148 0.89963 0.90247 0.92550 0.91651 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.51 36.01 0.38 -0.29 16 2 C 0.23 3.02 8.12 -155.61 -1.26 1.75 16 3 N -0.50 -7.41 11.20 -10.58 -0.12 -7.53 16 4 C 0.06 0.95 11.66 -17.48 -0.20 0.75 16 5 C -0.08 -1.26 6.82 -82.14 -0.56 -1.82 16 6 C 0.61 9.99 7.56 -12.82 -0.10 9.89 16 7 O -0.54 -9.87 16.17 5.21 0.08 -9.79 16 8 N -0.61 -9.30 3.07 -164.51 -0.50 -9.81 16 9 C 0.06 0.92 4.97 -2.53 -0.01 0.91 16 10 C 0.18 3.05 3.71 -65.78 -0.24 2.81 16 11 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 12 N -0.71 -15.56 5.24 -51.35 -0.27 -15.83 16 13 C -0.26 -6.38 9.96 -15.05 -0.15 -6.53 16 14 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 15 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 16 N -0.93 -25.72 13.06 55.49 0.72 -24.99 16 17 Si 0.91 20.64 29.55 -169.99 -5.02 15.62 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.14 -1.99 6.13 -24.89 -0.15 -2.15 16 22 C 0.14 1.98 3.43 -66.95 -0.23 1.75 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 C -0.16 -2.09 9.10 37.16 0.34 -1.76 16 25 N -0.55 -7.41 5.42 -7.02 -0.04 -7.45 16 26 H 0.43 5.43 5.56 -40.82 -0.23 5.20 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.18 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 32 H 0.07 1.00 6.23 -51.93 -0.32 0.68 16 33 H 0.39 9.12 7.76 -40.82 -0.32 8.80 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.94 7.09 -51.93 -0.37 0.57 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -29.81 324.01 -7.95 -37.76 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.39 Total: 12.04 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.29 Total: 5.10 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -0.21 Total: -65.62 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.81 -7.95 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988364617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.262 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds