Wall clock time and date at job start Mon Mar 30 2020 23:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30853 * 125.41927 * 2 1 4 4 C 1.33315 * 109.68673 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78971 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84970 * 179.97438 * 5 4 3 7 7 O 1.21678 * 119.99910 * 353.49053 * 6 5 4 8 8 N 1.34777 * 119.99763 * 173.48548 * 6 5 4 9 9 C 1.47420 * 125.65252 * 354.51214 * 8 6 5 10 10 C 1.54911 * 104.83135 * 204.08156 * 9 8 6 11 11 H 1.08998 * 111.03964 * 81.07931 * 10 9 8 12 12 N 1.46501 * 111.00238 * 204.91859 * 10 9 8 13 13 C 1.36946 * 119.99446 * 267.47101 * 12 10 9 14 14 H 1.07996 * 120.00332 * 359.72003 * 13 12 10 15 15 C 1.38813 * 119.99845 * 179.72607 * 13 12 10 16 16 N 1.31626 * 119.99972 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00160 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47023 * 89.99575 * 17 15 13 19 19 H 1.48502 * 109.47233 * 209.99842 * 17 15 13 20 20 H 1.48503 * 109.46859 * 329.99938 * 17 15 13 21 21 C 1.55160 * 101.58130 * 322.98537 * 10 9 8 22 22 C 1.47023 * 125.64420 * 174.45109 * 8 6 5 23 23 H 1.09007 * 110.01084 * 59.50083 * 22 8 6 24 24 C 1.53002 * 109.88636 * 298.40911 * 22 8 6 25 25 N 1.34499 * 125.41906 * 180.32328 * 2 1 3 26 26 H 0.97002 * 126.46898 * 359.97216 * 25 2 1 27 27 H 1.08994 * 109.47242 * 89.97341 * 1 2 3 28 28 H 1.09006 * 109.46824 * 209.97190 * 1 2 3 29 29 H 1.09000 * 109.47057 * 329.97359 * 1 2 3 30 30 H 1.08004 * 126.10790 * 180.02562 * 4 3 2 31 31 H 1.09002 * 110.36816 * 85.24392 * 9 8 6 32 32 H 1.08997 * 110.36348 * 322.91625 * 9 8 6 33 33 H 0.96996 * 120.00890 * 87.18981 * 12 10 9 34 34 H 0.96994 * 119.99964 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.71754 * 153.86548 * 21 10 9 36 36 H 1.08993 * 110.72095 * 277.13943 * 21 10 9 37 37 H 1.08996 * 109.47011 * 302.18876 * 24 22 8 38 38 H 1.08998 * 109.47136 * 62.19317 * 24 22 8 39 39 H 1.09005 * 109.47025 * 182.18822 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.8998 -0.9856 -0.1219 8 7 4.6946 -2.8351 0.1315 9 6 3.4472 -3.5739 0.3986 10 6 3.9045 -4.8983 1.0594 11 1 4.1092 -4.7559 2.1205 12 7 2.9118 -5.9564 0.8564 13 6 1.9367 -6.1694 1.7941 14 1 1.9022 -5.5604 2.6853 15 6 0.9927 -7.1683 1.5991 16 7 1.0344 -7.9103 0.5128 17 14 -0.3370 -7.4593 2.8784 18 1 -1.5214 -6.6218 2.5607 19 1 -0.7272 -8.8921 2.8697 20 1 0.1806 -7.0953 4.2219 21 6 5.2093 -5.2025 0.2770 22 6 5.8010 -3.7983 0.0326 23 1 6.5562 -3.5777 0.7871 24 6 6.4253 -3.7324 -1.3628 25 7 2.2865 -1.0961 -0.0062 26 1 1.9849 -2.0180 -0.0110 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 4.3978 1.3722 -0.0003 31 1 2.9197 -3.7773 -0.5333 32 1 2.8109 -3.0097 1.0805 33 1 2.9427 -6.5035 0.0561 34 1 0.3746 -8.6080 0.3764 35 1 5.8876 -5.8074 0.8787 36 1 4.9858 -5.6967 -0.6684 37 1 5.6610 -3.9361 -2.1127 38 1 6.8410 -2.7384 -1.5282 39 1 7.2187 -4.4757 -1.4413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988364617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:26 Heat of formation + Delta-G solvation = 18.496093 kcal Electronic energy + Delta-G solvation = -21948.708164 eV Core-core repulsion = 18698.758713 eV Total energy + Delta-G solvation = -3249.949451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35353 -41.05353 -38.80972 -36.06090 -34.27316 -33.30568 -33.08634 -32.17050 -30.16871 -28.43641 -26.89584 -25.90715 -24.48170 -22.56530 -22.22678 -21.37325 -20.75724 -19.32070 -18.60748 -17.74147 -17.28027 -16.72263 -16.62969 -16.03980 -15.50156 -15.30427 -15.19892 -14.80025 -14.51998 -14.30395 -14.20494 -13.88864 -13.52696 -13.44243 -13.26265 -13.08270 -12.90529 -12.85808 -12.41571 -12.16254 -12.08516 -11.83228 -11.60824 -11.53302 -11.26873 -11.10029 -10.99350 -9.95081 -9.50585 -9.10483 -7.97617 -5.28301 0.18328 1.49347 1.51411 1.58592 1.65774 1.68803 1.97552 2.20185 2.54549 3.23384 3.32420 3.44239 3.70153 3.72675 3.87587 4.02956 4.09908 4.16339 4.25387 4.39097 4.43530 4.50852 4.56843 4.67883 4.70958 4.75917 4.84131 4.98947 5.05522 5.06119 5.17900 5.30206 5.33813 5.45676 5.51948 6.15588 6.22774 6.30508 6.79114 6.93249 7.31745 8.00642 8.25837 9.24619 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.005824 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.489851 B = 4806.127182 C = 6460.308540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.241 3.759 3 N -0.522 5.522 4 C 0.062 3.938 5 C -0.104 4.104 6 C 0.608 3.392 7 O -0.561 6.561 8 N -0.607 5.607 9 C 0.074 3.926 10 C 0.169 3.831 11 H 0.067 0.933 12 N -0.719 5.719 13 C -0.248 4.248 14 H 0.079 0.921 15 C -0.062 4.062 16 N -0.963 5.963 17 Si 0.966 3.034 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.272 1.272 21 C -0.124 4.124 22 C 0.138 3.862 23 H 0.080 0.920 24 C -0.153 4.153 25 N -0.548 5.548 26 H 0.431 0.569 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.190 0.810 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.379 0.621 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 10.926 -1.866 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 N -0.242 5.242 4 C -0.093 4.093 5 C -0.220 4.220 6 C 0.398 3.602 7 O -0.440 6.440 8 N -0.340 5.340 9 C -0.053 4.053 10 C 0.058 3.942 11 H 0.085 0.915 12 N -0.357 5.357 13 C -0.379 4.379 14 H 0.097 0.903 15 C -0.255 4.255 16 N -0.612 5.612 17 Si 0.795 3.205 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.197 1.197 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.099 0.901 24 C -0.211 4.211 25 N -0.157 5.157 26 H 0.276 0.724 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.207 0.793 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.212 0.788 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.061 12.012 -1.769 12.521 hybrid contribution -0.568 -1.780 0.225 1.882 sum 2.493 10.231 -1.544 10.643 Atomic orbital electron populations 1.20547 0.81373 1.05906 1.05546 1.24290 0.97474 0.81092 0.99441 1.70207 1.02128 1.29252 1.22662 1.22839 0.95312 0.91257 0.99871 1.21020 0.84270 0.95823 1.20889 1.16641 0.86942 0.80275 0.76381 1.90781 1.27226 1.73054 1.52949 1.48500 1.11056 1.04658 1.69761 1.23393 0.86261 0.95442 1.00169 1.21385 0.88763 0.86501 0.97520 0.91463 1.42407 1.31819 1.37423 1.24090 1.19588 1.04721 1.13346 1.00253 0.90350 1.25459 1.01801 0.98826 0.99458 1.69789 1.38479 1.24331 1.28632 0.85265 0.79628 0.76419 0.79158 1.21142 1.22663 1.19695 1.22966 0.96956 0.94780 1.01600 1.21651 0.88629 0.87481 0.98717 0.90148 1.22064 1.01269 1.02648 0.95118 1.43940 1.05559 1.11378 1.54850 0.72381 0.87914 0.88764 0.87592 0.79257 0.91339 0.91244 0.78812 0.93889 0.88610 0.90213 0.92873 0.93009 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.51 71.24 0.75 -0.39 16 2 C 0.24 5.83 8.12 138.20 1.12 6.95 16 3 N -0.52 -14.83 11.20 -187.39 -2.10 -16.93 16 4 C 0.06 1.79 11.66 84.10 0.98 2.77 16 5 C -0.10 -3.09 6.82 40.01 0.27 -2.82 16 6 C 0.61 19.56 7.56 86.47 0.65 20.22 16 7 O -0.56 -20.44 16.17 -4.28 -0.07 -20.51 16 8 N -0.61 -17.88 3.07 -792.62 -2.43 -20.30 16 9 C 0.07 2.20 4.97 86.86 0.43 2.63 16 10 C 0.17 5.66 3.71 46.38 0.17 5.84 16 11 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 12 N -0.72 -30.97 5.24 -316.36 -1.66 -32.62 16 13 C -0.25 -12.07 9.96 84.03 0.84 -11.23 16 14 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 15 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 16 N -0.96 -53.74 13.06 21.65 0.28 -53.45 16 17 Si 0.97 42.06 29.55 68.60 2.03 44.09 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C -0.12 -3.41 6.13 31.78 0.19 -3.21 16 22 C 0.14 3.69 3.43 45.34 0.16 3.84 16 23 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 24 C -0.15 -3.75 9.10 71.98 0.65 -3.09 16 25 N -0.55 -14.05 5.42 -176.11 -0.95 -15.01 16 26 H 0.43 10.31 5.56 -92.71 -0.52 9.80 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.19 4.95 8.06 -2.91 -0.02 4.92 16 31 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 32 H 0.07 2.03 6.23 -2.39 -0.01 2.01 16 33 H 0.38 17.72 7.76 -92.71 -0.72 17.00 16 34 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 36 H 0.08 2.22 7.71 -2.39 -0.02 2.20 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.43 7.09 -2.39 -0.02 1.41 16 39 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -62.63 324.01 1.63 -61.00 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.16 Total: 34.98 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.69 Total: 18.75 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -6.86 Total: -138.32 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.07 Total: -20.51 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -62.63 1.63 -61.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988364617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.492 kcal (2) G-P(sol) polarization free energy of solvation -62.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds