Wall clock time and date at job start Mon Mar 30 2020 23:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30850 * 125.41875 * 2 1 4 4 C 1.33316 * 109.68799 * 179.74234 * 3 2 1 5 5 C 1.36663 * 107.78441 * 0.38255 * 4 3 2 6 6 C 1.46764 * 126.84621 * 179.89707 * 5 4 3 7 7 O 1.21679 * 120.00314 * 7.34987 * 6 5 4 8 8 N 1.34773 * 120.00075 * 187.35263 * 6 5 4 9 9 C 1.47427 * 125.64953 * 357.71595 * 8 6 5 10 10 C 1.54904 * 104.83529 * 155.90639 * 9 8 6 11 11 H 1.08997 * 111.00435 * 278.89671 * 10 9 8 12 12 N 1.46502 * 111.00526 * 155.08091 * 10 9 8 13 13 C 1.36935 * 120.00019 * 89.58207 * 12 10 9 14 14 H 1.08004 * 120.00050 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00161 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99952 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47029 * 180.02562 * 17 15 13 19 19 H 1.48491 * 109.47503 * 300.00271 * 17 15 13 20 20 H 1.48501 * 109.47074 * 60.00549 * 17 15 13 21 21 C 1.55155 * 101.61977 * 36.98999 * 10 9 8 22 22 C 1.47019 * 125.65357 * 177.75585 * 8 6 5 23 23 H 1.09011 * 109.88230 * 300.59740 * 22 8 6 24 24 C 1.53005 * 109.88357 * 61.60178 * 22 8 6 25 25 N 1.34496 * 125.41532 * 179.97438 * 2 1 3 26 26 H 0.97004 * 126.47481 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47166 * 270.01987 * 1 2 3 28 28 H 1.09002 * 109.47144 * 30.02390 * 1 2 3 29 29 H 1.09005 * 109.46828 * 150.02545 * 1 2 3 30 30 H 1.08003 * 126.11352 * 180.27412 * 4 3 2 31 31 H 1.09000 * 110.36744 * 37.06297 * 9 8 6 32 32 H 1.09003 * 110.45831 * 274.79282 * 9 8 6 33 33 H 0.97003 * 120.00037 * 269.58472 * 12 10 9 34 34 H 0.96998 * 119.99650 * 359.97438 * 16 15 13 35 35 H 1.09007 * 110.72498 * 82.87845 * 21 10 9 36 36 H 1.08992 * 110.72300 * 206.15787 * 21 10 9 37 37 H 1.08999 * 109.46572 * 58.55219 * 24 22 8 38 38 H 1.08995 * 109.47450 * 178.55060 * 24 22 8 39 39 H 1.09001 * 109.46865 * 298.55283 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7049 0.0056 5 6 3.5976 -0.6608 0.0007 6 6 4.8029 -1.4983 0.0020 7 8 5.8983 -0.9877 0.1427 8 7 4.6963 -2.8328 -0.1528 9 6 3.4350 -3.5846 -0.2847 10 6 3.8241 -4.8841 -1.0327 11 1 3.8941 -4.7108 -2.1065 12 7 2.8778 -5.9629 -0.7382 13 6 1.7651 -6.1297 -1.5188 14 1 1.5851 -5.4657 -2.3514 15 6 0.8687 -7.1523 -1.2402 16 7 1.0878 -7.9612 -0.2254 17 14 -0.6494 -7.3793 -2.3047 18 1 -1.4392 -8.5318 -1.8013 19 1 -1.4800 -6.1496 -2.2512 20 1 -0.2363 -7.6370 -3.7077 21 6 5.2197 -5.1877 -0.4263 22 6 5.8186 -3.7803 -0.2172 23 1 6.4714 -3.5256 -1.0523 24 6 6.6094 -3.7401 1.0920 25 7 2.2864 -1.0961 0.0005 26 1 1.9849 -2.0181 0.0013 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 4.3978 1.3722 0.0112 31 1 2.7122 -3.0134 -0.8673 32 1 3.0273 -3.8203 0.6983 33 1 3.0393 -6.5591 0.0098 34 1 1.8760 -7.8430 0.3276 35 1 5.1214 -5.7099 0.5254 36 1 5.8258 -5.7657 -1.1238 37 1 5.9491 -3.9881 1.9230 38 1 7.4239 -4.4630 1.0469 39 1 7.0186 -2.7405 1.2387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988364618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:29 Heat of formation + Delta-G solvation = 41.891429 kcal Electronic energy + Delta-G solvation = -22007.838932 eV Core-core repulsion = 18758.903979 eV Total energy + Delta-G solvation = -3248.934953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.29459 -39.86156 -37.54294 -34.68793 -33.21155 -32.12414 -31.62327 -31.12450 -28.40827 -27.44739 -25.78627 -24.03688 -23.21767 -21.51230 -21.04724 -20.27714 -19.68510 -17.69468 -17.39452 -16.60024 -16.02097 -15.66504 -15.22052 -14.65951 -14.24818 -14.11037 -13.82963 -13.59989 -13.50749 -13.14050 -12.97319 -12.83619 -12.56879 -12.55134 -12.26851 -11.91552 -11.32796 -11.05812 -10.87342 -10.75414 -10.55600 -10.35980 -10.18424 -10.14040 -9.89362 -9.40622 -9.21575 -8.75370 -8.39959 -7.36009 -6.34350 -3.38809 1.30305 2.75858 2.76866 3.07704 3.37125 3.37340 3.40069 3.58012 4.25363 4.41509 4.53878 4.78965 4.81288 5.00546 5.03891 5.21693 5.27349 5.30764 5.33869 5.44506 5.48168 5.55508 5.61332 5.67639 5.73492 5.81839 5.82891 5.88051 6.11959 6.16856 6.25413 6.42591 6.53398 6.53896 7.14794 7.49652 7.55629 7.86380 8.14177 8.50756 8.92761 9.79685 9.92417 11.12812 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.005987 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.599393 B = 4675.820036 C = 6421.868995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.233 3.767 3 N -0.499 5.499 4 C 0.065 3.935 5 C -0.084 4.084 6 C 0.608 3.392 7 O -0.535 6.535 8 N -0.609 5.609 9 C 0.061 3.939 10 C 0.181 3.819 11 H 0.070 0.930 12 N -0.722 5.722 13 C -0.348 4.348 14 H 0.067 0.933 15 C -0.035 4.035 16 N -0.935 5.935 17 Si 1.079 2.921 18 H -0.283 1.283 19 H -0.294 1.294 20 H -0.293 1.293 21 C -0.137 4.137 22 C 0.141 3.859 23 H 0.077 0.923 24 C -0.161 4.161 25 N -0.551 5.551 26 H 0.428 0.572 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.371 0.629 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 10.813 0.886 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 N -0.220 5.220 4 C -0.089 4.089 5 C -0.200 4.200 6 C 0.397 3.603 7 O -0.412 6.412 8 N -0.342 5.342 9 C -0.065 4.065 10 C 0.068 3.932 11 H 0.088 0.912 12 N -0.363 5.363 13 C -0.478 4.478 14 H 0.085 0.915 15 C -0.234 4.234 16 N -0.578 5.578 17 Si 0.909 3.091 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.220 1.220 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.095 0.905 24 C -0.220 4.220 25 N -0.162 5.162 26 H 0.275 0.725 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.199 0.801 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.205 0.795 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.269 11.086 0.551 11.329 hybrid contribution 1.517 -0.480 0.460 1.656 sum 3.786 10.607 1.011 11.307 Atomic orbital electron populations 1.20328 0.84263 1.04699 1.04115 1.23503 0.96018 0.81825 1.01754 1.70164 1.02025 1.28396 1.21393 1.22589 0.94768 0.91035 1.00525 1.21122 0.83867 0.95782 1.19272 1.16524 0.86934 0.80030 0.76806 1.90799 1.26400 1.72718 1.51329 1.48502 1.09209 1.05120 1.71409 1.23694 0.85510 0.95999 1.01345 1.21185 0.88165 0.86831 0.97034 0.91164 1.42339 1.24946 1.33049 1.35918 1.20034 1.01100 1.15808 1.10906 0.91514 1.25831 1.02842 0.94134 1.00620 1.70908 1.29545 1.39116 1.18271 0.83265 0.75144 0.76118 0.74614 1.20840 1.22106 1.22020 1.23056 0.97698 0.94583 1.02293 1.21549 0.87919 0.88333 0.98452 0.90539 1.22144 1.00031 1.03036 0.96742 1.44169 1.06099 1.11122 1.54803 0.72524 0.89590 0.88715 0.90084 0.80063 0.91735 0.91108 0.79465 0.93219 0.90381 0.89906 0.92621 0.91657 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.51 36.01 0.38 -0.30 16 2 C 0.23 3.05 8.12 -155.62 -1.26 1.79 16 3 N -0.50 -7.44 11.20 -10.58 -0.12 -7.56 16 4 C 0.07 0.97 11.67 -17.48 -0.20 0.77 16 5 C -0.08 -1.29 6.85 -82.14 -0.56 -1.85 16 6 C 0.61 10.02 7.63 -12.82 -0.10 9.92 16 7 O -0.54 -9.81 15.87 5.21 0.08 -9.73 16 8 N -0.61 -9.35 3.07 -164.48 -0.50 -9.86 16 9 C 0.06 0.97 5.22 -2.53 -0.01 0.95 16 10 C 0.18 3.16 3.70 -65.78 -0.24 2.92 16 11 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 12 N -0.72 -15.84 5.26 -51.35 -0.27 -16.11 16 13 C -0.35 -8.76 9.97 -15.06 -0.15 -8.91 16 14 H 0.07 1.65 7.83 -52.48 -0.41 1.24 16 15 C -0.04 -0.94 5.50 -17.43 -0.10 -1.04 16 16 N -0.93 -26.72 13.70 55.49 0.76 -25.96 16 17 Si 1.08 23.83 29.92 -169.99 -5.09 18.75 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 21 C -0.14 -2.00 6.12 -24.87 -0.15 -2.15 16 22 C 0.14 1.99 3.47 -66.93 -0.23 1.76 16 23 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 24 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 25 N -0.55 -7.54 5.45 -7.02 -0.04 -7.58 16 26 H 0.43 5.57 5.39 -40.82 -0.22 5.35 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.18 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.06 0.99 5.50 -51.93 -0.29 0.71 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.37 8.46 6.57 -40.82 -0.27 8.20 16 34 H 0.26 7.18 6.77 -40.82 -0.28 6.90 16 35 H 0.08 1.14 7.71 -51.93 -0.40 0.74 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.01 6.81 -51.93 -0.35 0.66 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -30.75 321.49 -7.86 -38.62 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.24 Total: 12.51 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.30 Total: 2.08 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.17 Total: -67.08 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.75 -7.86 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988364618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.508 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds