Wall clock time and date at job start Mon Mar 30 2020 23:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30850 * 125.41875 * 2 1 4 4 C 1.33316 * 109.68799 * 179.74234 * 3 2 1 5 5 C 1.36663 * 107.78441 * 0.38255 * 4 3 2 6 6 C 1.46764 * 126.84621 * 179.89707 * 5 4 3 7 7 O 1.21679 * 120.00314 * 7.34987 * 6 5 4 8 8 N 1.34773 * 120.00075 * 187.35263 * 6 5 4 9 9 C 1.47427 * 125.64953 * 357.71595 * 8 6 5 10 10 C 1.54904 * 104.83529 * 155.90639 * 9 8 6 11 11 H 1.08997 * 111.00435 * 278.89671 * 10 9 8 12 12 N 1.46502 * 111.00526 * 155.08091 * 10 9 8 13 13 C 1.36935 * 120.00019 * 89.58207 * 12 10 9 14 14 H 1.08004 * 120.00050 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00161 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99952 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47029 * 180.02562 * 17 15 13 19 19 H 1.48491 * 109.47503 * 300.00271 * 17 15 13 20 20 H 1.48501 * 109.47074 * 60.00549 * 17 15 13 21 21 C 1.55155 * 101.61977 * 36.98999 * 10 9 8 22 22 C 1.47019 * 125.65357 * 177.75585 * 8 6 5 23 23 H 1.09011 * 109.88230 * 300.59740 * 22 8 6 24 24 C 1.53005 * 109.88357 * 61.60178 * 22 8 6 25 25 N 1.34496 * 125.41532 * 179.97438 * 2 1 3 26 26 H 0.97004 * 126.47481 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47166 * 270.01987 * 1 2 3 28 28 H 1.09002 * 109.47144 * 30.02390 * 1 2 3 29 29 H 1.09005 * 109.46828 * 150.02545 * 1 2 3 30 30 H 1.08003 * 126.11352 * 180.27412 * 4 3 2 31 31 H 1.09000 * 110.36744 * 37.06297 * 9 8 6 32 32 H 1.09003 * 110.45831 * 274.79282 * 9 8 6 33 33 H 0.97003 * 120.00037 * 269.58472 * 12 10 9 34 34 H 0.96998 * 119.99650 * 359.97438 * 16 15 13 35 35 H 1.09007 * 110.72498 * 82.87845 * 21 10 9 36 36 H 1.08992 * 110.72300 * 206.15787 * 21 10 9 37 37 H 1.08999 * 109.46572 * 58.55219 * 24 22 8 38 38 H 1.08995 * 109.47450 * 178.55060 * 24 22 8 39 39 H 1.09001 * 109.46865 * 298.55283 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7049 0.0056 5 6 3.5976 -0.6608 0.0007 6 6 4.8029 -1.4983 0.0020 7 8 5.8983 -0.9877 0.1427 8 7 4.6963 -2.8328 -0.1528 9 6 3.4350 -3.5846 -0.2847 10 6 3.8241 -4.8841 -1.0327 11 1 3.8941 -4.7108 -2.1065 12 7 2.8778 -5.9629 -0.7382 13 6 1.7651 -6.1297 -1.5188 14 1 1.5851 -5.4657 -2.3514 15 6 0.8687 -7.1523 -1.2402 16 7 1.0878 -7.9612 -0.2254 17 14 -0.6494 -7.3793 -2.3047 18 1 -1.4392 -8.5318 -1.8013 19 1 -1.4800 -6.1496 -2.2512 20 1 -0.2363 -7.6370 -3.7077 21 6 5.2197 -5.1877 -0.4263 22 6 5.8186 -3.7803 -0.2172 23 1 6.4714 -3.5256 -1.0523 24 6 6.6094 -3.7401 1.0920 25 7 2.2864 -1.0961 0.0005 26 1 1.9849 -2.0181 0.0013 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 4.3978 1.3722 0.0112 31 1 2.7122 -3.0134 -0.8673 32 1 3.0273 -3.8203 0.6983 33 1 3.0393 -6.5591 0.0098 34 1 1.8760 -7.8430 0.3276 35 1 5.1214 -5.7099 0.5254 36 1 5.8258 -5.7657 -1.1238 37 1 5.9491 -3.9881 1.9230 38 1 7.4239 -4.4630 1.0469 39 1 7.0186 -2.7405 1.2387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988364618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:28 Heat of formation + Delta-G solvation = 22.146450 kcal Electronic energy + Delta-G solvation = -22008.695138 eV Core-core repulsion = 18758.903979 eV Total energy + Delta-G solvation = -3249.791159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.40337 -41.13194 -38.90669 -36.40091 -34.36388 -33.33057 -33.11779 -32.21075 -29.97751 -28.47715 -26.98832 -25.78593 -24.55431 -22.65140 -22.41460 -21.46758 -20.84352 -19.50760 -18.61818 -17.88791 -17.25926 -16.91358 -16.59139 -16.17583 -15.66798 -15.45569 -15.23315 -14.92028 -14.62295 -14.34287 -14.22832 -13.99377 -13.55382 -13.45899 -13.28643 -13.17365 -12.80732 -12.67416 -12.41210 -12.12148 -11.91343 -11.85664 -11.58280 -11.30718 -11.25636 -11.12720 -10.98999 -10.01946 -9.54827 -9.21946 -8.39517 -5.38190 0.14513 1.58372 1.62059 1.64976 1.69205 1.85539 1.92793 2.15573 2.69438 3.14847 3.32319 3.38371 3.58055 3.64206 3.74881 3.98756 3.98895 4.06093 4.20249 4.29287 4.33434 4.41769 4.51639 4.60448 4.67278 4.68762 4.81128 4.92038 4.94014 5.03835 5.11579 5.21123 5.28054 5.42124 5.58790 6.10560 6.23150 6.48755 6.75363 6.87789 7.02933 7.92490 8.03145 9.11426 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.005987 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.599393 B = 4675.820036 C = 6421.868995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.241 3.759 3 N -0.521 5.521 4 C 0.063 3.937 5 C -0.106 4.106 6 C 0.608 3.392 7 O -0.558 6.558 8 N -0.607 5.607 9 C 0.076 3.924 10 C 0.174 3.826 11 H 0.064 0.936 12 N -0.731 5.731 13 C -0.337 4.337 14 H 0.071 0.929 15 C -0.092 4.092 16 N -0.972 5.972 17 Si 1.121 2.879 18 H -0.297 1.297 19 H -0.273 1.273 20 H -0.281 1.281 21 C -0.124 4.124 22 C 0.139 3.861 23 H 0.082 0.918 24 C -0.154 4.154 25 N -0.551 5.551 26 H 0.431 0.569 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.192 0.808 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.365 0.635 34 H 0.247 0.753 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 11.545 0.336 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 N -0.242 5.242 4 C -0.091 4.091 5 C -0.222 4.222 6 C 0.398 3.602 7 O -0.437 6.437 8 N -0.340 5.340 9 C -0.051 4.051 10 C 0.063 3.937 11 H 0.082 0.918 12 N -0.372 5.372 13 C -0.468 4.468 14 H 0.089 0.911 15 C -0.285 4.285 16 N -0.619 5.619 17 Si 0.946 3.054 18 H -0.224 1.224 19 H -0.199 1.199 20 H -0.207 1.207 21 C -0.163 4.163 22 C 0.036 3.964 23 H 0.100 0.900 24 C -0.212 4.212 25 N -0.161 5.161 26 H 0.277 0.723 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.209 0.791 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.198 0.802 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.820 11.858 -0.014 11.997 hybrid contribution 1.708 -0.620 0.619 1.919 sum 3.528 11.238 0.605 11.794 Atomic orbital electron populations 1.20556 0.81328 1.05942 1.05578 1.24320 0.97526 0.81115 0.99329 1.70210 1.02110 1.29217 1.22632 1.22855 0.95346 0.91185 0.99719 1.21026 0.84221 0.95872 1.21068 1.16650 0.87017 0.80185 0.76386 1.90780 1.27320 1.73075 1.52568 1.48495 1.09324 1.05073 1.71087 1.23374 0.85767 0.95083 1.00847 1.21314 0.88979 0.86365 0.97073 0.91753 1.42418 1.25100 1.34202 1.35488 1.20335 1.01364 1.14707 1.10423 0.91128 1.27029 1.05621 0.94515 1.01318 1.71004 1.29965 1.40950 1.19952 0.82706 0.72672 0.76259 0.73734 1.22369 1.19885 1.20741 1.22969 0.95878 0.95024 1.02433 1.21669 0.87742 0.87626 0.99374 0.89955 1.22074 1.00414 1.02862 0.95808 1.44142 1.05628 1.11417 1.54953 0.72271 0.87894 0.87480 0.88796 0.79148 0.91249 0.91522 0.80152 0.94238 0.90241 0.88496 0.93035 0.89308 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.51 71.24 0.75 -0.42 16 2 C 0.24 5.89 8.12 138.20 1.12 7.01 16 3 N -0.52 -14.85 11.20 -187.40 -2.10 -16.95 16 4 C 0.06 1.85 11.67 84.10 0.98 2.83 16 5 C -0.11 -3.17 6.85 40.01 0.27 -2.90 16 6 C 0.61 19.63 7.63 86.47 0.66 20.29 16 7 O -0.56 -20.24 15.87 -4.28 -0.07 -20.31 16 8 N -0.61 -18.02 3.07 -792.52 -2.43 -20.45 16 9 C 0.08 2.31 5.22 86.85 0.45 2.76 16 10 C 0.17 5.89 3.70 46.38 0.17 6.06 16 11 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 12 N -0.73 -31.68 5.26 -316.39 -1.66 -33.34 16 13 C -0.34 -16.68 9.97 84.03 0.84 -15.84 16 14 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 15 C -0.09 -4.86 5.50 84.86 0.47 -4.39 16 16 N -0.97 -55.99 13.70 21.65 0.30 -55.70 16 17 Si 1.12 47.30 29.92 68.60 2.05 49.35 16 18 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 21 C -0.12 -3.41 6.12 31.80 0.19 -3.22 16 22 C 0.14 3.71 3.47 45.36 0.16 3.87 16 23 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 24 C -0.15 -3.79 9.10 71.98 0.66 -3.14 16 25 N -0.55 -14.35 5.45 -176.11 -0.96 -15.31 16 26 H 0.43 10.61 5.39 -92.71 -0.50 10.11 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.07 2.05 5.50 -2.39 -0.01 2.04 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.37 16.68 6.57 -92.71 -0.61 16.07 16 34 H 0.25 14.07 6.77 -92.71 -0.63 13.45 16 35 H 0.08 2.20 7.71 -2.38 -0.02 2.18 16 36 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.55 6.81 -2.39 -0.02 1.53 16 Total: -1.00 -65.02 321.49 1.97 -63.05 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.12 Total: 36.75 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.72 Total: 12.91 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -6.85 Total: -141.74 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.07 Total: -20.31 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.05 Total: 49.35 kcal Total: -65.02 1.97 -63.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988364618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.198 kcal (2) G-P(sol) polarization free energy of solvation -65.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds