Wall clock time and date at job start Mon Mar 30 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30858 * 125.41928 * 2 1 4 4 C 1.33315 * 109.69112 * 179.97438 * 3 2 1 5 5 C 1.36668 * 107.78234 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84299 * 180.26681 * 5 4 3 7 7 O 1.21682 * 120.00132 * 22.77013 * 6 5 4 8 8 N 1.34770 * 119.99808 * 202.77056 * 6 5 4 9 9 C 1.46931 * 120.63019 * 6.49905 * 8 6 5 10 10 C 1.53631 * 108.54136 * 126.36983 * 9 8 6 11 11 C 1.53047 * 109.23882 * 54.85654 * 10 9 8 12 12 N 1.46507 * 109.44593 * 178.49964 * 11 10 9 13 13 C 1.36936 * 119.99455 * 275.06354 * 12 11 10 14 14 H 1.08000 * 120.00776 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99768 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00401 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47260 * 119.99987 * 17 15 13 20 20 H 1.48495 * 109.47252 * 240.00277 * 17 15 13 21 21 C 1.53037 * 109.53741 * 298.51171 * 11 10 9 22 22 C 1.46924 * 120.63300 * 186.78380 * 8 6 5 23 23 N 1.34495 * 125.41958 * 179.97438 * 2 1 3 24 24 H 0.97003 * 126.47516 * 0.03403 * 23 2 1 25 25 H 1.09000 * 109.46950 * 270.03479 * 1 2 3 26 26 H 1.08999 * 109.47173 * 30.03986 * 1 2 3 27 27 H 1.09004 * 109.46614 * 150.03852 * 1 2 3 28 28 H 1.08001 * 126.10978 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.58745 * 246.20042 * 9 8 6 30 30 H 1.08995 * 109.58905 * 6.63130 * 9 8 6 31 31 H 1.08999 * 109.63324 * 294.86857 * 10 9 8 32 32 H 1.08994 * 109.43255 * 174.72693 * 10 9 8 33 33 H 1.08997 * 109.46328 * 58.53446 * 11 10 9 34 34 H 0.96994 * 119.99685 * 95.06148 * 12 11 10 35 35 H 0.96999 * 119.99850 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.49741 * 301.41173 * 21 11 10 37 37 H 1.09005 * 109.52278 * 181.33428 * 21 11 10 38 38 H 1.09007 * 109.58314 * 353.37233 * 22 8 6 39 39 H 1.09004 * 109.59152 * 113.65177 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5976 -0.6608 0.0004 6 6 4.8030 -1.4982 0.0063 7 8 5.8549 -1.0475 0.4197 8 7 4.7446 -2.7663 -0.4462 9 6 3.5219 -3.2800 -1.0786 10 6 3.8896 -3.8611 -2.4525 11 6 4.9938 -4.9064 -2.2787 12 7 5.3230 -5.4894 -3.5819 13 6 4.5873 -6.5367 -4.0689 14 1 3.7647 -6.9332 -3.4922 15 6 4.8994 -7.0894 -5.3034 16 7 5.9023 -6.6065 -6.0060 17 14 3.8964 -8.5184 -5.9675 18 1 2.8333 -8.8722 -4.9928 19 1 3.2751 -8.1292 -7.2589 20 1 4.7837 -9.6903 -6.1783 21 6 6.2394 -4.2418 -1.6882 22 6 5.9003 -3.6633 -0.3109 23 7 2.2865 -1.0960 0.0005 24 1 1.9850 -2.0180 0.0004 25 1 -0.3633 0.0006 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3633 -0.8904 -0.5133 28 1 4.3978 1.3723 0.0011 29 1 3.0871 -4.0598 -0.4535 30 1 2.8062 -2.4675 -1.2037 31 1 4.2436 -3.0629 -3.1049 32 1 3.0108 -4.3302 -2.8947 33 1 4.6480 -5.6917 -1.6066 34 1 6.0620 -5.1335 -4.0996 35 1 6.1202 -6.9925 -6.8688 36 1 6.5713 -3.4401 -2.3479 37 1 7.0336 -4.9816 -1.5866 38 1 6.7544 -3.1038 0.0708 39 1 5.6564 -4.4724 0.3776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990269740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:49 Heat of formation + Delta-G solvation = 44.127482 kcal Electronic energy + Delta-G solvation = -21688.766097 eV Core-core repulsion = 18439.928107 eV Total energy + Delta-G solvation = -3248.837990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.52615 -39.79827 -37.44905 -34.72504 -33.17352 -32.30447 -31.86371 -30.79870 -29.40479 -27.64550 -25.13408 -23.40655 -23.31049 -21.94679 -21.27973 -20.36849 -19.57982 -17.77369 -17.12606 -16.59034 -15.96418 -15.88326 -14.91696 -14.86157 -14.18737 -14.12570 -13.84721 -13.68949 -13.53005 -13.39990 -13.22213 -12.98092 -12.76385 -12.41240 -12.08602 -11.68589 -11.14065 -10.98074 -10.91317 -10.63762 -10.52632 -10.29015 -10.24356 -10.01734 -9.92079 -9.75920 -9.00506 -8.82659 -8.53127 -7.06957 -5.85473 -3.15477 1.17140 2.53813 2.64765 2.90214 3.26298 3.36324 3.41373 3.44366 4.09410 4.39384 4.49868 4.68679 4.78845 5.03419 5.13448 5.14177 5.20103 5.23175 5.28901 5.39661 5.45084 5.54498 5.60621 5.64215 5.80465 5.86082 6.09484 6.21558 6.27774 6.36860 6.38700 6.49081 6.75675 6.90827 6.95045 7.28323 7.60110 7.71622 8.03093 8.32353 9.43826 10.00521 10.35199 11.36965 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.004046 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.899162 B = 6918.201528 C = 7747.516636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.230 3.770 3 N -0.496 5.496 4 C 0.066 3.934 5 C -0.081 4.081 6 C 0.594 3.406 7 O -0.531 6.531 8 N -0.604 5.604 9 C 0.090 3.910 10 C -0.148 4.148 11 C 0.180 3.820 12 N -0.724 5.724 13 C -0.243 4.243 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.140 4.140 22 C 0.118 3.882 23 N -0.553 5.553 24 H 0.426 0.574 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.183 0.817 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 9.704 13.506 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.033 4.033 3 N -0.216 5.216 4 C -0.088 4.088 5 C -0.196 4.196 6 C 0.382 3.618 7 O -0.408 6.408 8 N -0.337 5.337 9 C -0.034 4.034 10 C -0.190 4.190 11 C 0.069 3.931 12 N -0.364 5.364 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.179 4.179 22 C -0.004 4.004 23 N -0.163 5.163 24 H 0.269 0.731 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.200 0.800 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.140 10.556 13.681 19.549 hybrid contribution -0.198 -2.010 -0.799 2.173 sum -9.338 8.546 12.882 18.060 Atomic orbital electron populations 1.20309 0.84266 1.04681 1.03983 1.23506 0.95953 0.81798 1.02048 1.70174 1.02100 1.28317 1.20998 1.22623 0.94771 0.91120 1.00266 1.21128 0.83794 0.95939 1.18778 1.16924 0.86400 0.80676 0.77821 1.90826 1.29504 1.72043 1.48433 1.48074 1.15680 1.11338 1.58611 1.22333 0.86271 0.98540 0.96215 1.22752 1.02209 1.00376 0.93624 1.20154 0.91426 0.92473 0.89041 1.42439 1.38236 1.38336 1.17363 1.19259 1.10020 1.07542 1.00633 0.91130 1.24763 0.98612 0.99926 0.97470 1.69674 1.30314 1.43811 1.14011 0.86137 0.79240 0.82186 0.78705 1.20571 1.21829 1.21793 1.22214 0.99732 1.00612 0.95307 1.21679 0.88375 0.92427 0.97966 1.43969 1.06105 1.10436 1.55785 0.73057 0.89666 0.88621 0.90305 0.80015 0.91148 0.90630 0.91928 0.90529 0.93372 0.78175 0.93446 0.91622 0.90289 0.88986 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 36.01 0.38 -0.05 16 2 C 0.23 2.33 8.12 -155.61 -1.26 1.07 16 3 N -0.50 -6.39 11.20 -10.58 -0.12 -6.51 16 4 C 0.07 0.87 11.73 -17.48 -0.21 0.66 16 5 C -0.08 -1.05 6.40 -82.14 -0.53 -1.58 16 6 C 0.59 8.79 7.63 -12.82 -0.10 8.69 16 7 O -0.53 -9.34 16.40 5.20 0.09 -9.25 16 8 N -0.60 -8.17 2.97 -174.01 -0.52 -8.69 16 9 C 0.09 1.08 5.42 -3.48 -0.02 1.06 16 10 C -0.15 -2.36 5.67 -26.38 -0.15 -2.51 16 11 C 0.18 3.27 2.73 -67.88 -0.19 3.09 16 12 N -0.72 -17.28 5.12 -53.38 -0.27 -17.55 16 13 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 17 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C -0.14 -2.22 5.55 -26.62 -0.15 -2.37 16 22 C 0.12 1.60 6.44 -3.71 -0.02 1.58 16 23 N -0.55 -5.51 4.85 -7.01 -0.03 -5.54 16 24 H 0.43 3.19 6.44 -40.82 -0.26 2.92 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.18 2.19 8.06 -52.49 -0.42 1.76 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.79 4.14 -51.93 -0.22 0.58 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -32.97 321.04 -8.15 -41.13 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.35 Total: 9.06 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.48 Total: 2.64 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.22 Total: -65.05 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.97 -8.15 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990269740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.257 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds