Wall clock time and date at job start Mon Mar 30 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30858 * 125.41928 * 2 1 4 4 C 1.33315 * 109.69112 * 179.97438 * 3 2 1 5 5 C 1.36668 * 107.78234 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84299 * 180.26681 * 5 4 3 7 7 O 1.21682 * 120.00132 * 22.77013 * 6 5 4 8 8 N 1.34770 * 119.99808 * 202.77056 * 6 5 4 9 9 C 1.46931 * 120.63019 * 6.49905 * 8 6 5 10 10 C 1.53631 * 108.54136 * 126.36983 * 9 8 6 11 11 C 1.53047 * 109.23882 * 54.85654 * 10 9 8 12 12 N 1.46507 * 109.44593 * 178.49964 * 11 10 9 13 13 C 1.36936 * 119.99455 * 275.06354 * 12 11 10 14 14 H 1.08000 * 120.00776 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99768 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00401 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47260 * 119.99987 * 17 15 13 20 20 H 1.48495 * 109.47252 * 240.00277 * 17 15 13 21 21 C 1.53037 * 109.53741 * 298.51171 * 11 10 9 22 22 C 1.46924 * 120.63300 * 186.78380 * 8 6 5 23 23 N 1.34495 * 125.41958 * 179.97438 * 2 1 3 24 24 H 0.97003 * 126.47516 * 0.03403 * 23 2 1 25 25 H 1.09000 * 109.46950 * 270.03479 * 1 2 3 26 26 H 1.08999 * 109.47173 * 30.03986 * 1 2 3 27 27 H 1.09004 * 109.46614 * 150.03852 * 1 2 3 28 28 H 1.08001 * 126.10978 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.58745 * 246.20042 * 9 8 6 30 30 H 1.08995 * 109.58905 * 6.63130 * 9 8 6 31 31 H 1.08999 * 109.63324 * 294.86857 * 10 9 8 32 32 H 1.08994 * 109.43255 * 174.72693 * 10 9 8 33 33 H 1.08997 * 109.46328 * 58.53446 * 11 10 9 34 34 H 0.96994 * 119.99685 * 95.06148 * 12 11 10 35 35 H 0.96999 * 119.99850 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.49741 * 301.41173 * 21 11 10 37 37 H 1.09005 * 109.52278 * 181.33428 * 21 11 10 38 38 H 1.09007 * 109.58314 * 353.37233 * 22 8 6 39 39 H 1.09004 * 109.59152 * 113.65177 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5976 -0.6608 0.0004 6 6 4.8030 -1.4982 0.0063 7 8 5.8549 -1.0475 0.4197 8 7 4.7446 -2.7663 -0.4462 9 6 3.5219 -3.2800 -1.0786 10 6 3.8896 -3.8611 -2.4525 11 6 4.9938 -4.9064 -2.2787 12 7 5.3230 -5.4894 -3.5819 13 6 4.5873 -6.5367 -4.0689 14 1 3.7647 -6.9332 -3.4922 15 6 4.8994 -7.0894 -5.3034 16 7 5.9023 -6.6065 -6.0060 17 14 3.8964 -8.5184 -5.9675 18 1 2.8333 -8.8722 -4.9928 19 1 3.2751 -8.1292 -7.2589 20 1 4.7837 -9.6903 -6.1783 21 6 6.2394 -4.2418 -1.6882 22 6 5.9003 -3.6633 -0.3109 23 7 2.2865 -1.0960 0.0005 24 1 1.9850 -2.0180 0.0004 25 1 -0.3633 0.0006 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3633 -0.8904 -0.5133 28 1 4.3978 1.3723 0.0011 29 1 3.0871 -4.0598 -0.4535 30 1 2.8062 -2.4675 -1.2037 31 1 4.2436 -3.0629 -3.1049 32 1 3.0108 -4.3302 -2.8947 33 1 4.6480 -5.6917 -1.6066 34 1 6.0620 -5.1335 -4.0996 35 1 6.1202 -6.9925 -6.8688 36 1 6.5713 -3.4401 -2.3479 37 1 7.0336 -4.9816 -1.5866 38 1 6.7544 -3.1038 0.0708 39 1 5.6564 -4.4724 0.3776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990269740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:48 Heat of formation + Delta-G solvation = 21.488795 kcal Electronic energy + Delta-G solvation = -21689.747784 eV Core-core repulsion = 18439.928107 eV Total energy + Delta-G solvation = -3249.819677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.41971 -40.95005 -38.77582 -36.29131 -34.35580 -33.57431 -32.90830 -31.91268 -31.05745 -28.51262 -26.63634 -24.83527 -24.58508 -23.14226 -22.24798 -21.51250 -20.69746 -19.21043 -18.69631 -17.64884 -17.03502 -16.84695 -16.68556 -15.88712 -15.51290 -15.41249 -15.22162 -15.03102 -14.76457 -14.59050 -14.19821 -13.91125 -13.46011 -13.34738 -13.21606 -13.19074 -12.89042 -12.67261 -12.32888 -12.12356 -12.05571 -11.75241 -11.53727 -11.36222 -11.18769 -11.10957 -10.88144 -9.93426 -9.49963 -9.03126 -7.94223 -5.23558 0.21367 1.48349 1.48829 1.58510 1.64387 1.66151 1.94066 2.24394 2.56251 3.28760 3.39299 3.52089 3.73468 3.77516 3.92337 4.04839 4.06053 4.23520 4.30135 4.32501 4.50447 4.59200 4.62098 4.76913 4.77441 4.78043 4.86094 4.94789 5.01218 5.12918 5.23642 5.41204 5.45125 5.51885 5.54198 6.16212 6.24538 6.27276 6.83060 6.91672 7.33242 8.08446 8.31147 9.29748 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.004046 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.899162 B = 6918.201528 C = 7747.516636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.245 3.755 3 N -0.527 5.527 4 C 0.054 3.946 5 C -0.098 4.098 6 C 0.594 3.406 7 O -0.567 6.567 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.139 4.139 11 C 0.174 3.826 12 N -0.739 5.739 13 C -0.235 4.235 14 H 0.083 0.917 15 C -0.078 4.078 16 N -0.973 5.973 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.297 1.297 20 H -0.298 1.298 21 C -0.130 4.130 22 C 0.124 3.876 23 N -0.542 5.542 24 H 0.438 0.562 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.181 0.819 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.369 0.631 35 H 0.249 0.751 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 9.121 15.143 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 N -0.248 5.248 4 C -0.099 4.099 5 C -0.213 4.213 6 C 0.383 3.617 7 O -0.447 6.447 8 N -0.335 5.335 9 C -0.023 4.023 10 C -0.180 4.180 11 C 0.065 3.935 12 N -0.378 5.378 13 C -0.366 4.366 14 H 0.101 0.899 15 C -0.270 4.270 16 N -0.624 5.624 17 Si 0.800 3.200 18 H -0.184 1.184 19 H -0.225 1.225 20 H -0.225 1.225 21 C -0.169 4.169 22 C 0.002 3.998 23 N -0.153 5.153 24 H 0.285 0.715 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.199 0.801 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.200 0.800 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.978 9.957 15.371 21.883 hybrid contribution 0.625 -1.754 -1.247 2.241 sum -11.353 8.203 14.124 19.892 Atomic orbital electron populations 1.20570 0.80911 1.06117 1.05645 1.24361 0.97529 0.81009 0.98998 1.70199 1.02083 1.29829 1.22687 1.22781 0.95347 0.91578 1.00219 1.20815 0.84420 0.95576 1.20521 1.17128 0.86486 0.80806 0.77258 1.90803 1.30979 1.72723 1.50147 1.48118 1.16087 1.11042 1.58246 1.22380 0.85902 0.99959 0.94108 1.22515 1.00806 0.98873 0.95774 1.20426 0.93061 0.93244 0.86743 1.42695 1.37703 1.38292 1.19129 1.19696 1.09496 1.07167 1.00289 0.89895 1.25567 1.00137 1.02961 0.98344 1.69839 1.32574 1.45699 1.14292 0.85106 0.78057 0.78843 0.77963 1.18440 1.22484 1.22509 1.22078 0.98705 0.99793 0.96305 1.21628 0.88632 0.92974 0.96588 1.43857 1.04855 1.11219 1.55410 0.71502 0.87736 0.88317 0.87735 0.80140 0.87706 0.88788 0.94287 0.90940 0.92446 0.79955 0.94214 0.93560 0.90511 0.89487 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 71.24 0.75 0.19 16 2 C 0.25 4.28 8.12 138.20 1.12 5.40 16 3 N -0.53 -12.87 11.20 -187.39 -2.10 -14.97 16 4 C 0.05 1.42 11.73 84.10 0.99 2.40 16 5 C -0.10 -2.40 6.40 40.01 0.26 -2.15 16 6 C 0.59 16.99 7.63 86.47 0.66 17.65 16 7 O -0.57 -19.96 16.40 -4.29 -0.07 -20.03 16 8 N -0.60 -15.15 2.97 -822.67 -2.44 -17.59 16 9 C 0.10 2.07 5.42 86.51 0.47 2.54 16 10 C -0.14 -4.20 5.67 30.82 0.17 -4.02 16 11 C 0.17 6.13 2.73 45.02 0.12 6.25 16 12 N -0.74 -35.40 5.12 -322.79 -1.65 -37.05 16 13 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 14 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 15 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 16 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 17 Si 0.97 44.47 29.55 68.60 2.03 46.49 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 21 C -0.13 -4.07 5.55 30.67 0.17 -3.90 16 22 C 0.12 3.18 6.44 86.36 0.56 3.73 16 23 N -0.54 -9.24 4.85 -176.10 -0.85 -10.09 16 24 H 0.44 4.80 6.44 -92.71 -0.60 4.21 16 25 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.64 4.14 -2.39 -0.01 1.64 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.37 19.67 7.80 -92.71 -0.72 18.95 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.09 2.38 7.00 -2.38 -0.02 2.36 16 39 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -72.87 321.04 1.52 -71.35 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.24 Total: 27.65 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.57 Total: 12.78 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -6.76 Total: -138.24 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.07 Total: -20.03 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.87 1.52 -71.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990269740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.836 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds