Wall clock time and date at job start Mon Mar 30 2020 23:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30852 * 125.41748 * 2 1 4 4 C 1.33318 * 109.68876 * 179.74343 * 3 2 1 5 5 C 1.36672 * 107.78125 * 0.38229 * 4 3 2 6 6 C 1.46759 * 126.84148 * 179.89715 * 5 4 3 7 7 O 1.21677 * 120.00446 * 7.20338 * 6 5 4 8 8 N 1.34782 * 119.99629 * 187.20339 * 6 5 4 9 9 C 1.46497 * 119.99913 * 6.06252 * 8 6 5 10 10 C 1.46495 * 119.99950 * 186.05694 * 8 6 5 11 11 C 1.53789 * 113.61307 * 120.00353 * 10 8 6 12 12 C 1.53777 * 87.08119 * 89.20313 * 11 10 8 13 13 N 1.46493 * 113.61809 * 139.98327 * 12 11 10 14 14 C 1.36932 * 120.00479 * 156.52617 * 13 12 11 15 15 H 1.08005 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00278 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00048 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47260 * 89.99766 * 18 16 14 20 20 H 1.48503 * 109.46922 * 210.00059 * 18 16 14 21 21 H 1.48501 * 109.46757 * 329.99552 * 18 16 14 22 22 C 1.53777 * 87.17529 * 25.38883 * 12 11 10 23 23 N 1.34488 * 125.41696 * 179.97438 * 2 1 3 24 24 H 0.96998 * 126.47530 * 0.04246 * 23 2 1 25 25 H 1.09008 * 109.47197 * 270.02750 * 1 2 3 26 26 H 1.09004 * 109.47225 * 30.01761 * 1 2 3 27 27 H 1.08996 * 109.47210 * 150.02652 * 1 2 3 28 28 H 1.07996 * 126.11487 * 180.27128 * 4 3 2 29 29 H 1.08996 * 109.47177 * 275.13165 * 9 8 6 30 30 H 1.09004 * 109.47230 * 35.13903 * 9 8 6 31 31 H 1.09003 * 109.47003 * 155.13457 * 9 8 6 32 32 H 1.08999 * 112.85325 * 348.80651 * 10 8 6 33 33 H 1.09001 * 113.61135 * 334.64893 * 11 10 8 34 34 H 1.08998 * 113.61348 * 203.75238 * 11 10 8 35 35 H 1.09001 * 113.61378 * 270.80214 * 12 11 10 36 36 H 0.97008 * 120.00020 * 336.52958 * 13 12 11 37 37 H 0.97007 * 119.99638 * 180.02562 * 17 16 14 38 38 H 1.09005 * 113.61547 * 89.15968 * 22 12 11 39 39 H 1.09003 * 113.61743 * 220.06495 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0056 5 6 3.5975 -0.6608 0.0007 6 6 4.8028 -1.4982 0.0019 7 8 5.8985 -0.9873 0.1400 8 7 4.6960 -2.8331 -0.1499 9 6 3.3940 -3.4346 -0.4485 10 6 5.8820 -3.6827 -0.0164 11 6 5.7677 -4.7282 1.1057 12 6 5.1487 -5.6691 0.0586 13 7 5.6006 -7.0575 0.1771 14 6 4.8291 -8.0735 -0.3203 15 1 3.8871 -7.8513 -0.7997 16 6 5.2571 -9.3892 -0.2076 17 7 6.4048 -9.6600 0.3770 18 14 4.2049 -10.7752 -0.8868 19 1 4.5805 -11.0352 -2.2997 20 1 4.4248 -12.0037 -0.0820 21 1 2.7727 -10.3885 -0.8184 22 6 5.9105 -4.8619 -1.0057 23 7 2.2864 -1.0960 0.0005 24 1 1.9849 -2.0180 0.0003 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 4.3977 1.3722 0.0111 29 1 2.8484 -3.5996 0.4805 30 1 2.8230 -2.7644 -1.0912 31 1 3.5419 -4.3872 -0.9571 32 1 6.8104 -3.1123 0.0113 33 1 5.0770 -4.4432 1.8993 34 1 6.7312 -5.0696 1.4841 35 1 4.0650 -5.5820 -0.0202 36 1 6.4465 -7.2572 0.6080 37 1 6.7041 -10.5794 0.4555 38 1 6.9131 -5.2400 -1.2057 39 1 5.3349 -4.6847 -1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998547782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:57 Heat of formation + Delta-G solvation = 80.943894 kcal Electronic energy + Delta-G solvation = -21502.750330 eV Core-core repulsion = 18255.508819 eV Total energy + Delta-G solvation = -3247.241511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.55396 -40.17314 -38.04441 -35.01869 -33.46310 -32.57799 -31.98414 -30.07087 -27.93653 -27.45289 -25.28686 -24.66647 -23.32415 -21.63393 -21.50205 -20.21814 -19.05120 -17.80343 -17.17954 -16.59120 -16.08982 -15.94400 -15.10346 -14.97786 -14.65899 -14.21806 -13.86922 -13.64636 -13.41477 -13.32676 -13.03306 -12.84452 -12.67307 -12.52826 -12.01573 -11.79862 -11.56130 -10.98933 -10.87223 -10.61390 -10.49063 -10.36004 -10.28986 -10.06790 -9.85871 -9.59067 -8.98058 -8.85674 -8.54561 -7.07716 -5.88107 -3.17845 1.10258 2.53813 2.59113 2.89270 3.20594 3.35226 3.39913 3.42445 4.04939 4.34190 4.49478 4.62606 4.72429 4.89996 4.97641 5.04301 5.09787 5.17554 5.26894 5.31895 5.39182 5.40890 5.50239 5.59699 5.74633 5.81108 6.06634 6.18668 6.22700 6.27217 6.35864 6.44069 6.58641 6.90744 6.97197 7.24634 7.56967 7.67622 8.00641 8.29777 9.41189 9.98180 10.32426 11.34033 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027027 B = 0.003682 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.752155 B = 7601.781053 C = 8438.107111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.230 3.770 3 N -0.497 5.497 4 C 0.069 3.931 5 C -0.084 4.084 6 C 0.595 3.405 7 O -0.527 6.527 8 N -0.589 5.589 9 C 0.048 3.952 10 C 0.114 3.886 11 C -0.161 4.161 12 C 0.159 3.841 13 N -0.712 5.712 14 C -0.249 4.249 15 H 0.070 0.930 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.175 4.175 23 N -0.556 5.556 24 H 0.426 0.574 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.184 0.816 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 16.704 -1.034 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.034 4.034 3 N -0.217 5.217 4 C -0.085 4.085 5 C -0.200 4.200 6 C 0.383 3.617 7 O -0.403 6.403 8 N -0.321 5.321 9 C -0.096 4.096 10 C 0.011 3.989 11 C -0.201 4.201 12 C 0.047 3.953 13 N -0.350 5.350 14 C -0.380 4.380 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.738 3.262 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.217 4.217 23 N -0.168 5.168 24 H 0.272 0.728 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.201 0.799 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.594 17.570 -1.018 20.542 hybrid contribution -0.115 -2.243 -0.241 2.259 sum -10.709 15.327 -1.259 18.740 Atomic orbital electron populations 1.20309 0.84283 1.04560 1.04104 1.23512 0.95979 0.81940 1.01954 1.70180 1.02105 1.28412 1.21051 1.22652 0.94755 0.91171 0.99932 1.21167 0.83766 0.95906 1.19124 1.16891 0.86927 0.81061 0.76783 1.90833 1.26298 1.72718 1.50411 1.47384 1.09230 1.05589 1.69882 1.22402 0.84932 1.01448 1.00792 1.22016 0.87560 0.90548 0.98803 1.23879 1.02405 0.96577 0.97283 1.21894 0.96339 0.84801 0.92259 1.42414 1.24039 0.99522 1.68989 1.19250 1.01421 0.86325 1.31003 0.91177 1.24780 0.97379 0.97397 1.01120 1.69659 1.21003 1.18873 1.48175 0.86196 0.79490 0.82087 0.78405 1.21607 1.21684 1.20741 1.24327 1.03313 0.95629 0.98398 1.44231 1.06126 1.10816 1.55606 0.72808 0.89567 0.88662 0.90375 0.79919 0.92148 0.91595 0.87468 0.87640 0.92018 0.89046 0.90351 0.77968 0.93323 0.88926 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 36.00 0.38 -0.01 16 2 C 0.23 2.20 8.12 -155.63 -1.26 0.94 16 3 N -0.50 -6.12 11.20 -10.58 -0.12 -6.24 16 4 C 0.07 0.87 11.67 -17.47 -0.20 0.67 16 5 C -0.08 -1.05 6.62 -82.14 -0.54 -1.59 16 6 C 0.60 8.68 7.63 -12.81 -0.10 8.58 16 7 O -0.53 -9.26 16.39 5.21 0.09 -9.17 16 8 N -0.59 -7.86 3.08 -174.41 -0.54 -8.40 16 9 C 0.05 0.48 7.42 59.85 0.44 0.93 16 10 C 0.11 1.72 4.48 -67.02 -0.30 1.42 16 11 C -0.16 -2.58 7.49 -25.92 -0.19 -2.78 16 12 C 0.16 2.88 3.79 -67.13 -0.25 2.63 16 13 N -0.71 -16.91 5.41 -52.64 -0.28 -17.19 16 14 C -0.25 -6.56 9.97 -15.06 -0.15 -6.71 16 15 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 18 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.17 -2.85 7.10 -25.83 -0.18 -3.03 16 23 N -0.56 -5.26 5.13 -7.02 -0.04 -5.29 16 24 H 0.43 2.99 5.13 -40.82 -0.21 2.78 16 25 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.06 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.07 0.54 5.60 -51.93 -0.29 0.25 16 31 H 0.11 1.20 4.53 -51.93 -0.24 0.96 16 32 H 0.11 1.67 7.21 -51.93 -0.37 1.30 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.51 8.11 -51.93 -0.42 1.08 16 35 H 0.08 1.33 5.43 -51.93 -0.28 1.05 16 36 H 0.39 9.86 7.91 -40.82 -0.32 9.54 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.06 0.93 7.45 -51.93 -0.39 0.54 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -32.96 319.27 -7.84 -40.80 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.00 Total: 10.10 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.46 Total: 0.66 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.25 Total: -63.67 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.96 -7.84 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998547782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.740 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds