Wall clock time and date at job start Mon Mar 30 2020 23:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30852 * 125.41748 * 2 1 4 4 C 1.33318 * 109.68876 * 179.74343 * 3 2 1 5 5 C 1.36672 * 107.78125 * 0.38229 * 4 3 2 6 6 C 1.46759 * 126.84148 * 179.89715 * 5 4 3 7 7 O 1.21677 * 120.00446 * 7.20338 * 6 5 4 8 8 N 1.34782 * 119.99629 * 187.20339 * 6 5 4 9 9 C 1.46497 * 119.99913 * 6.06252 * 8 6 5 10 10 C 1.46495 * 119.99950 * 186.05694 * 8 6 5 11 11 C 1.53789 * 113.61307 * 120.00353 * 10 8 6 12 12 C 1.53777 * 87.08119 * 89.20313 * 11 10 8 13 13 N 1.46493 * 113.61809 * 139.98327 * 12 11 10 14 14 C 1.36932 * 120.00479 * 156.52617 * 13 12 11 15 15 H 1.08005 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00278 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00048 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47260 * 89.99766 * 18 16 14 20 20 H 1.48503 * 109.46922 * 210.00059 * 18 16 14 21 21 H 1.48501 * 109.46757 * 329.99552 * 18 16 14 22 22 C 1.53777 * 87.17529 * 25.38883 * 12 11 10 23 23 N 1.34488 * 125.41696 * 179.97438 * 2 1 3 24 24 H 0.96998 * 126.47530 * 0.04246 * 23 2 1 25 25 H 1.09008 * 109.47197 * 270.02750 * 1 2 3 26 26 H 1.09004 * 109.47225 * 30.01761 * 1 2 3 27 27 H 1.08996 * 109.47210 * 150.02652 * 1 2 3 28 28 H 1.07996 * 126.11487 * 180.27128 * 4 3 2 29 29 H 1.08996 * 109.47177 * 275.13165 * 9 8 6 30 30 H 1.09004 * 109.47230 * 35.13903 * 9 8 6 31 31 H 1.09003 * 109.47003 * 155.13457 * 9 8 6 32 32 H 1.08999 * 112.85325 * 348.80651 * 10 8 6 33 33 H 1.09001 * 113.61135 * 334.64893 * 11 10 8 34 34 H 1.08998 * 113.61348 * 203.75238 * 11 10 8 35 35 H 1.09001 * 113.61378 * 270.80214 * 12 11 10 36 36 H 0.97008 * 120.00020 * 336.52958 * 13 12 11 37 37 H 0.97007 * 119.99638 * 180.02562 * 17 16 14 38 38 H 1.09005 * 113.61547 * 89.15968 * 22 12 11 39 39 H 1.09003 * 113.61743 * 220.06495 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0056 5 6 3.5975 -0.6608 0.0007 6 6 4.8028 -1.4982 0.0019 7 8 5.8985 -0.9873 0.1400 8 7 4.6960 -2.8331 -0.1499 9 6 3.3940 -3.4346 -0.4485 10 6 5.8820 -3.6827 -0.0164 11 6 5.7677 -4.7282 1.1057 12 6 5.1487 -5.6691 0.0586 13 7 5.6006 -7.0575 0.1771 14 6 4.8291 -8.0735 -0.3203 15 1 3.8871 -7.8513 -0.7997 16 6 5.2571 -9.3892 -0.2076 17 7 6.4048 -9.6600 0.3770 18 14 4.2049 -10.7752 -0.8868 19 1 4.5805 -11.0352 -2.2997 20 1 4.4248 -12.0037 -0.0820 21 1 2.7727 -10.3885 -0.8184 22 6 5.9105 -4.8619 -1.0057 23 7 2.2864 -1.0960 0.0005 24 1 1.9849 -2.0180 0.0003 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 4.3977 1.3722 0.0111 29 1 2.8484 -3.5996 0.4805 30 1 2.8230 -2.7644 -1.0912 31 1 3.5419 -4.3872 -0.9571 32 1 6.8104 -3.1123 0.0113 33 1 5.0770 -4.4432 1.8993 34 1 6.7312 -5.0696 1.4841 35 1 4.0650 -5.5820 -0.0202 36 1 6.4465 -7.2572 0.6080 37 1 6.7041 -10.5794 0.4555 38 1 6.9131 -5.2400 -1.2057 39 1 5.3349 -4.6847 -1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998547782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:56 Heat of formation + Delta-G solvation = 58.374115 kcal Electronic energy + Delta-G solvation = -21503.729029 eV Core-core repulsion = 18255.508819 eV Total energy + Delta-G solvation = -3248.220210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.40980 -41.36834 -39.33212 -36.32598 -35.06307 -33.56338 -32.76790 -31.83955 -28.80855 -28.36873 -26.69802 -26.23327 -24.67493 -22.84806 -22.47362 -21.12124 -20.32805 -19.08580 -18.79210 -17.73055 -17.02477 -17.01754 -16.69464 -15.95119 -15.93482 -15.61621 -15.10955 -15.02945 -14.33635 -14.31307 -14.05240 -13.70546 -13.52679 -13.42438 -13.22529 -13.20424 -12.98344 -12.80183 -12.55193 -12.14796 -11.97813 -11.76152 -11.48505 -11.22960 -11.11442 -11.06549 -10.86506 -9.92171 -9.49337 -9.00563 -7.94254 -5.23254 0.17452 1.49241 1.50491 1.58546 1.60457 1.69816 1.99180 2.19668 2.57048 3.28415 3.37387 3.50856 3.69493 3.74125 3.85913 3.92417 4.05296 4.16897 4.25527 4.28884 4.35440 4.56522 4.59866 4.67790 4.77078 4.84508 4.85936 4.87993 5.02173 5.08664 5.13187 5.22491 5.45289 5.51158 5.64641 6.15788 6.24531 6.27024 6.82863 6.91326 7.33506 8.09293 8.31742 9.29206 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027027 B = 0.003682 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.752155 B = 7601.781053 C = 8438.107111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.245 3.755 3 N -0.528 5.528 4 C 0.060 3.940 5 C -0.099 4.099 6 C 0.595 3.405 7 O -0.566 6.566 8 N -0.587 5.587 9 C 0.041 3.959 10 C 0.129 3.871 11 C -0.152 4.152 12 C 0.149 3.851 13 N -0.728 5.728 14 C -0.242 4.242 15 H 0.084 0.916 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.971 3.029 19 H -0.290 1.290 20 H -0.300 1.300 21 H -0.264 1.264 22 C -0.164 4.164 23 N -0.545 5.545 24 H 0.438 0.562 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.183 0.817 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.077 0.923 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.849 17.317 -1.555 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 N -0.249 5.249 4 C -0.094 4.094 5 C -0.215 4.215 6 C 0.384 3.616 7 O -0.445 6.445 8 N -0.318 5.318 9 C -0.101 4.101 10 C 0.024 3.976 11 C -0.192 4.192 12 C 0.040 3.960 13 N -0.365 5.365 14 C -0.374 4.374 15 H 0.102 0.898 16 C -0.269 4.269 17 N -0.622 5.622 18 Si 0.801 3.199 19 H -0.217 1.217 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.206 4.206 23 N -0.158 5.158 24 H 0.286 0.714 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.200 0.800 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.723 18.210 -1.559 22.855 hybrid contribution 0.757 -2.294 -0.082 2.417 sum -12.967 15.916 -1.642 20.595 Atomic orbital electron populations 1.20571 0.80937 1.06190 1.05585 1.24366 0.97554 0.81144 0.98866 1.70213 1.02069 1.29879 1.22711 1.22806 0.95328 0.91561 0.99718 1.20777 0.84258 0.95463 1.20995 1.17135 0.87076 0.81309 0.76048 1.90807 1.27923 1.73480 1.52336 1.47391 1.09806 1.05172 1.69441 1.22621 0.83715 1.01399 1.02383 1.21724 0.88305 0.90072 0.97504 1.23747 1.02026 0.96052 0.97384 1.22264 0.97585 0.82424 0.93737 1.42640 1.23462 1.01374 1.69017 1.19724 1.01572 0.86929 1.29145 0.89797 1.25586 0.98768 0.99965 1.02609 1.69824 1.23059 1.18663 1.50662 0.85170 0.78833 0.78773 0.77163 1.21715 1.22748 1.18813 1.24102 1.02306 0.95534 0.98639 1.44132 1.04869 1.11552 1.55220 0.71351 0.87993 0.88162 0.87635 0.80017 0.89938 0.89327 0.88122 0.88631 0.91016 0.89909 0.88484 0.79585 0.94133 0.90435 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.24 3.97 8.12 138.20 1.12 5.09 16 3 N -0.53 -12.15 11.20 -187.40 -2.10 -14.25 16 4 C 0.06 1.49 11.67 84.10 0.98 2.47 16 5 C -0.10 -2.33 6.62 40.01 0.27 -2.06 16 6 C 0.59 16.80 7.63 86.47 0.66 17.46 16 7 O -0.57 -20.07 16.39 -4.27 -0.07 -20.14 16 8 N -0.59 -14.65 3.08 -823.93 -2.54 -17.19 16 9 C 0.04 0.70 7.42 127.77 0.95 1.65 16 10 C 0.13 3.75 4.48 45.58 0.20 3.95 16 11 C -0.15 -4.73 7.49 31.12 0.23 -4.50 16 12 C 0.15 5.21 3.79 45.52 0.17 5.38 16 13 N -0.73 -34.37 5.41 -320.47 -1.73 -36.10 16 14 C -0.24 -12.53 9.97 84.04 0.84 -11.70 16 15 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 17 N -0.97 -58.05 13.06 21.65 0.28 -57.77 16 18 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 C -0.16 -5.20 7.10 31.18 0.22 -4.98 16 23 N -0.54 -8.68 5.13 -176.12 -0.90 -9.58 16 24 H 0.44 4.44 5.13 -92.71 -0.48 3.96 16 25 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 29 H 0.08 1.09 7.53 -2.39 -0.02 1.07 16 30 H 0.09 1.13 5.60 -2.38 -0.01 1.12 16 31 H 0.10 1.92 4.53 -2.39 -0.01 1.91 16 32 H 0.10 3.04 7.21 -2.39 -0.02 3.02 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 35 H 0.10 3.03 5.43 -2.39 -0.01 3.02 16 36 H 0.37 19.37 7.91 -92.70 -0.73 18.64 16 37 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 39 H 0.07 2.09 7.45 -2.39 -0.02 2.07 16 Total: -1.00 -71.90 319.27 1.71 -70.18 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.11 Total: 29.57 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.86 Total: 9.25 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -6.99 Total: -134.89 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.90 1.71 -70.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998547782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.557 kcal (2) G-P(sol) polarization free energy of solvation -71.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds