Wall clock time and date at job start Mon Mar 30 2020 23:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30852 * 125.41518 * 2 1 4 4 C 1.33326 * 109.68130 * 180.02562 * 3 2 1 5 5 C 1.36660 * 107.78312 * 359.97438 * 4 3 2 6 6 C 1.46772 * 126.83960 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99863 * 28.55190 * 6 5 4 8 8 N 1.34773 * 119.99844 * 208.54917 * 6 5 4 9 9 C 1.46926 * 120.63083 * 359.82535 * 8 6 5 10 10 C 1.53196 * 108.77296 * 126.40850 * 9 8 6 11 11 C 1.53041 * 109.31033 * 54.64066 * 10 9 8 12 12 C 1.53043 * 109.53838 * 298.62808 * 11 10 9 13 13 H 1.09000 * 109.49739 * 301.38613 * 12 11 10 14 14 N 1.46494 * 109.49991 * 181.31990 * 12 11 10 15 15 C 1.36939 * 120.00284 * 155.00649 * 14 12 11 16 16 H 1.08001 * 119.99392 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00106 * 180.02562 * 15 14 12 18 18 N 1.31614 * 119.99770 * 179.72165 * 17 15 14 19 19 Si 1.86796 * 119.99993 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47089 * 90.00298 * 19 17 15 21 21 H 1.48504 * 109.46926 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47129 * 330.00319 * 19 17 15 23 23 C 1.46925 * 120.62938 * 179.84597 * 8 6 5 24 24 N 1.34490 * 125.41574 * 180.30714 * 2 1 3 25 25 H 0.97001 * 126.47538 * 359.97438 * 24 2 1 26 26 H 1.09007 * 109.46854 * 89.97673 * 1 2 3 27 27 H 1.08996 * 109.47181 * 209.97960 * 1 2 3 28 28 H 1.09001 * 109.47191 * 329.98515 * 1 2 3 29 29 H 1.08005 * 126.10569 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.59012 * 6.62837 * 9 8 6 31 31 H 1.08998 * 109.59190 * 246.19865 * 9 8 6 32 32 H 1.08993 * 109.50497 * 294.68450 * 10 9 8 33 33 H 1.09007 * 109.49807 * 174.58205 * 10 9 8 34 34 H 1.09001 * 109.46137 * 178.61335 * 11 10 9 35 35 H 1.09003 * 109.45242 * 58.64425 * 11 10 9 36 36 H 0.97005 * 120.00001 * 334.99861 * 14 12 11 37 37 H 0.96996 * 120.00327 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.58786 * 113.80179 * 23 8 6 39 39 H 1.08993 * 109.59011 * 353.37657 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 3.5975 -0.6609 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.8311 -1.0851 0.5013 8 7 4.7708 -2.7249 -0.5589 9 6 3.5356 -3.2390 -1.1662 10 6 3.8398 -3.6853 -2.5998 11 6 4.9964 -4.6873 -2.5833 12 6 6.2470 -4.0161 -2.0108 13 1 6.5027 -3.1466 -2.6163 14 7 7.3618 -4.9664 -2.0246 15 6 8.6517 -4.5083 -2.0601 16 1 8.8472 -3.4462 -2.0784 17 6 9.7080 -5.4088 -2.0737 18 7 10.9477 -4.9684 -2.1134 19 14 9.3698 -7.2456 -2.0428 20 1 9.2473 -7.7499 -3.4342 21 1 10.4888 -7.9435 -1.3600 22 1 8.1045 -7.5037 -1.3096 23 6 5.9701 -3.5735 -0.5706 24 7 2.2864 -1.0960 -0.0059 25 1 1.9849 -2.0180 -0.0105 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3633 0.8899 0.5141 29 1 4.3979 1.3722 -0.0011 30 1 2.7808 -2.4528 -1.1807 31 1 3.1705 -4.0883 -0.5888 32 1 4.1178 -2.8186 -3.1994 33 1 2.9559 -4.1571 -3.0292 34 1 5.1987 -5.0252 -3.5996 35 1 4.7270 -5.5424 -1.9632 36 1 7.1862 -5.9203 -2.0084 37 1 11.6858 -5.5976 -2.1226 38 1 5.8036 -4.4501 0.0555 39 1 6.8215 -3.0080 -0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998746757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:56 Heat of formation + Delta-G solvation = 51.485034 kcal Electronic energy + Delta-G solvation = -21820.638490 eV Core-core repulsion = 18572.119547 eV Total energy + Delta-G solvation = -3248.518943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53591 -39.74898 -37.45400 -34.87086 -33.10899 -32.40011 -32.03340 -31.38318 -28.99439 -27.74240 -25.39971 -24.04784 -22.52938 -21.85864 -21.37391 -20.38975 -19.65001 -17.69143 -17.61129 -16.61361 -15.91361 -15.81861 -14.95054 -14.68065 -14.50034 -14.28800 -13.96849 -13.78461 -13.54273 -13.22385 -13.10703 -12.83246 -12.77650 -12.72807 -12.48137 -11.75875 -11.36501 -11.00525 -10.86797 -10.79653 -10.51303 -10.38548 -10.20465 -9.98236 -9.93204 -9.62330 -9.18540 -8.73648 -8.47106 -7.35504 -5.80740 -3.18971 1.22198 2.50973 2.67604 2.94599 3.32157 3.32726 3.34948 3.41748 4.07708 4.37973 4.52972 4.54518 4.69259 4.81772 4.93437 5.05802 5.11548 5.18776 5.20989 5.33480 5.37516 5.50318 5.59064 5.63460 5.70533 5.76766 5.90138 5.95494 6.11702 6.26951 6.37027 6.50155 6.62870 6.79412 6.93439 7.39709 7.72209 7.94273 8.17064 8.37631 9.14208 9.85628 10.03521 11.37152 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033869 B = 0.004073 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.512058 B = 6873.154345 C = 7428.138834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.225 3.775 3 N -0.494 5.494 4 C 0.062 3.938 5 C -0.076 4.076 6 C 0.588 3.412 7 O -0.519 6.519 8 N -0.603 5.603 9 C 0.089 3.911 10 C -0.127 4.127 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.061 0.939 14 N -0.741 5.741 15 C -0.251 4.251 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.093 3.907 24 N -0.554 5.554 25 H 0.424 0.576 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.183 0.817 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.362 0.638 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.845 4.101 2.119 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 N -0.214 5.214 4 C -0.090 4.090 5 C -0.191 4.191 6 C 0.374 3.626 7 O -0.394 6.394 8 N -0.337 5.337 9 C -0.035 4.035 10 C -0.166 4.166 11 C -0.168 4.168 12 C 0.062 3.938 13 H 0.080 0.920 14 N -0.383 5.383 15 C -0.381 4.381 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.576 5.576 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.031 4.031 24 N -0.166 5.166 25 H 0.268 0.732 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.200 0.800 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.273 5.247 2.375 24.947 hybrid contribution 0.078 -2.724 0.039 2.725 sum -24.195 2.523 2.413 24.445 Atomic orbital electron populations 1.20285 0.84357 1.04445 1.03989 1.23480 0.95883 0.81854 1.02618 1.70171 1.02137 1.28277 1.20802 1.22637 0.94731 0.91165 1.00496 1.21252 0.83714 0.96077 1.18063 1.16975 0.86198 0.80578 0.78808 1.90888 1.31291 1.71576 1.45609 1.48181 1.12788 1.15741 1.56991 1.22144 0.87011 0.99068 0.95259 1.21846 0.99176 1.00224 0.95382 1.21873 0.94927 0.97928 1.02079 1.20463 0.86998 0.93502 0.92846 0.92048 1.42721 1.02448 1.03435 1.89733 1.19105 0.80761 0.94544 1.43648 0.88977 1.24687 0.95032 0.97401 1.01667 1.69701 0.97576 1.33515 1.56813 0.86555 0.77115 0.87080 0.77751 1.21039 1.21655 1.20377 1.22793 0.86152 0.93380 1.00761 1.43964 1.06142 1.10209 1.56245 0.73238 0.89627 0.90555 0.88720 0.79959 0.90298 0.91105 0.91142 0.90802 0.91063 0.92086 0.80451 0.92933 0.91933 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.22 2.13 8.12 -155.62 -1.26 0.87 16 3 N -0.49 -6.27 11.20 -10.58 -0.12 -6.39 16 4 C 0.06 0.85 11.77 -17.47 -0.21 0.64 16 5 C -0.08 -1.00 6.39 -82.14 -0.53 -1.52 16 6 C 0.59 9.49 7.64 -12.81 -0.10 9.40 16 7 O -0.52 -10.56 16.43 5.20 0.09 -10.47 16 8 N -0.60 -8.76 2.97 -174.27 -0.52 -9.28 16 9 C 0.09 0.89 5.64 -3.71 -0.02 0.87 16 10 C -0.13 -1.33 6.08 -26.61 -0.16 -1.50 16 11 C -0.13 -1.79 5.35 -26.69 -0.14 -1.93 16 12 C 0.17 3.19 2.92 -67.81 -0.20 3.00 16 13 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 14 N -0.74 -16.95 4.93 -53.31 -0.26 -17.22 16 15 C -0.25 -7.01 10.41 -15.06 -0.16 -7.17 16 16 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 18 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 19 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 23 C 0.09 1.66 6.02 -3.71 -0.02 1.64 16 24 N -0.55 -5.16 4.84 -7.02 -0.03 -5.19 16 25 H 0.42 2.68 6.51 -40.82 -0.27 2.41 16 26 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.18 2.33 8.06 -52.48 -0.42 1.90 16 30 H 0.08 0.64 3.81 -51.93 -0.20 0.44 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.10 2.13 7.00 -51.93 -0.36 1.77 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -35.25 317.91 -7.80 -43.06 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.30 Total: 7.67 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -2.51 Total: 4.47 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.16 Total: -66.49 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.25 -7.80 -43.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998746757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.545 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds