Wall clock time and date at job start Mon Mar 30 2020 23:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30852 * 125.41518 * 2 1 4 4 C 1.33326 * 109.68130 * 180.02562 * 3 2 1 5 5 C 1.36660 * 107.78312 * 359.97438 * 4 3 2 6 6 C 1.46772 * 126.83960 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99863 * 28.55190 * 6 5 4 8 8 N 1.34773 * 119.99844 * 208.54917 * 6 5 4 9 9 C 1.46926 * 120.63083 * 359.82535 * 8 6 5 10 10 C 1.53196 * 108.77296 * 126.40850 * 9 8 6 11 11 C 1.53041 * 109.31033 * 54.64066 * 10 9 8 12 12 C 1.53043 * 109.53838 * 298.62808 * 11 10 9 13 13 H 1.09000 * 109.49739 * 301.38613 * 12 11 10 14 14 N 1.46494 * 109.49991 * 181.31990 * 12 11 10 15 15 C 1.36939 * 120.00284 * 155.00649 * 14 12 11 16 16 H 1.08001 * 119.99392 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00106 * 180.02562 * 15 14 12 18 18 N 1.31614 * 119.99770 * 179.72165 * 17 15 14 19 19 Si 1.86796 * 119.99993 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47089 * 90.00298 * 19 17 15 21 21 H 1.48504 * 109.46926 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47129 * 330.00319 * 19 17 15 23 23 C 1.46925 * 120.62938 * 179.84597 * 8 6 5 24 24 N 1.34490 * 125.41574 * 180.30714 * 2 1 3 25 25 H 0.97001 * 126.47538 * 359.97438 * 24 2 1 26 26 H 1.09007 * 109.46854 * 89.97673 * 1 2 3 27 27 H 1.08996 * 109.47181 * 209.97960 * 1 2 3 28 28 H 1.09001 * 109.47191 * 329.98515 * 1 2 3 29 29 H 1.08005 * 126.10569 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.59012 * 6.62837 * 9 8 6 31 31 H 1.08998 * 109.59190 * 246.19865 * 9 8 6 32 32 H 1.08993 * 109.50497 * 294.68450 * 10 9 8 33 33 H 1.09007 * 109.49807 * 174.58205 * 10 9 8 34 34 H 1.09001 * 109.46137 * 178.61335 * 11 10 9 35 35 H 1.09003 * 109.45242 * 58.64425 * 11 10 9 36 36 H 0.97005 * 120.00001 * 334.99861 * 14 12 11 37 37 H 0.96996 * 120.00327 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.58786 * 113.80179 * 23 8 6 39 39 H 1.08993 * 109.59011 * 353.37657 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 3.5975 -0.6609 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.8311 -1.0851 0.5013 8 7 4.7708 -2.7249 -0.5589 9 6 3.5356 -3.2390 -1.1662 10 6 3.8398 -3.6853 -2.5998 11 6 4.9964 -4.6873 -2.5833 12 6 6.2470 -4.0161 -2.0108 13 1 6.5027 -3.1466 -2.6163 14 7 7.3618 -4.9664 -2.0246 15 6 8.6517 -4.5083 -2.0601 16 1 8.8472 -3.4462 -2.0784 17 6 9.7080 -5.4088 -2.0737 18 7 10.9477 -4.9684 -2.1134 19 14 9.3698 -7.2456 -2.0428 20 1 9.2473 -7.7499 -3.4342 21 1 10.4888 -7.9435 -1.3600 22 1 8.1045 -7.5037 -1.3096 23 6 5.9701 -3.5735 -0.5706 24 7 2.2864 -1.0960 -0.0059 25 1 1.9849 -2.0180 -0.0105 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3633 0.8899 0.5141 29 1 4.3979 1.3722 -0.0011 30 1 2.7808 -2.4528 -1.1807 31 1 3.1705 -4.0883 -0.5888 32 1 4.1178 -2.8186 -3.1994 33 1 2.9559 -4.1571 -3.0292 34 1 5.1987 -5.0252 -3.5996 35 1 4.7270 -5.5424 -1.9632 36 1 7.1862 -5.9203 -2.0084 37 1 11.6858 -5.5976 -2.1226 38 1 5.8036 -4.4501 0.0555 39 1 6.8215 -3.0080 -0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998746757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:55 Heat of formation + Delta-G solvation = 24.938465 kcal Electronic energy + Delta-G solvation = -21821.789636 eV Core-core repulsion = 18572.119547 eV Total energy + Delta-G solvation = -3249.670088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44363 -40.98071 -38.81681 -36.49290 -34.39357 -33.62687 -33.01511 -32.79715 -30.54174 -28.61659 -26.50016 -25.78687 -23.59187 -23.31124 -22.32375 -21.63681 -20.75591 -19.61853 -18.76415 -17.65538 -17.12719 -16.92908 -16.54997 -16.03896 -15.72540 -15.49954 -15.23590 -14.94276 -14.83249 -14.34725 -14.28338 -14.07200 -13.93712 -13.51065 -13.29876 -13.20003 -12.99669 -12.59638 -12.21645 -12.03514 -11.99886 -11.85718 -11.52387 -11.42562 -11.20115 -11.09760 -11.05615 -10.02934 -9.57352 -9.29695 -8.05913 -5.42962 0.22681 1.35626 1.41914 1.48654 1.59226 1.62869 1.92958 2.23915 2.46127 3.24263 3.29007 3.43772 3.54726 3.85715 3.89925 3.93596 4.06099 4.18145 4.24601 4.28698 4.43432 4.56851 4.62436 4.75993 4.80440 4.80946 4.85201 4.93481 5.05842 5.15466 5.29316 5.33436 5.37790 5.43196 5.72239 6.16970 6.19873 6.27121 6.83506 6.92879 7.03077 7.74594 7.97302 9.15928 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033869 B = 0.004073 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.512058 B = 6873.154345 C = 7428.138834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.248 3.752 3 N -0.527 5.527 4 C 0.051 3.949 5 C -0.090 4.090 6 C 0.584 3.416 7 O -0.578 6.578 8 N -0.599 5.599 9 C 0.083 3.917 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.168 3.832 13 H 0.028 0.972 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.043 0.957 17 C -0.065 4.065 18 N -0.985 5.985 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.244 1.244 23 C 0.105 3.895 24 N -0.538 5.538 25 H 0.441 0.559 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.174 0.826 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.372 0.628 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.062 1.580 1.858 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.016 4.016 3 N -0.247 5.247 4 C -0.102 4.102 5 C -0.206 4.206 6 C 0.372 3.628 7 O -0.458 6.458 8 N -0.331 5.331 9 C -0.038 4.038 10 C -0.159 4.159 11 C -0.159 4.159 12 C 0.059 3.941 13 H 0.046 0.954 14 N -0.385 5.385 15 C -0.372 4.372 16 H 0.061 0.939 17 C -0.256 4.256 18 N -0.635 5.635 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.168 1.168 23 C -0.020 4.020 24 N -0.151 5.151 25 H 0.288 0.712 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.191 0.809 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.206 0.794 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -29.609 2.700 2.095 29.805 hybrid contribution 1.610 -1.771 0.107 2.396 sum -27.999 0.929 2.202 28.100 Atomic orbital electron populations 1.20588 0.80451 1.06179 1.05833 1.24432 0.97580 0.80843 0.98719 1.70204 1.01764 1.30022 1.22736 1.22693 0.95426 0.91557 1.00564 1.20625 0.84261 0.95333 1.20372 1.17388 0.86452 0.80910 0.78012 1.90852 1.33726 1.72900 1.48293 1.48189 1.13331 1.14932 1.56651 1.22570 0.85097 1.00964 0.95199 1.21858 0.99415 0.99038 0.95595 1.21803 0.93138 0.99016 1.01949 1.20644 0.88170 0.92307 0.92970 0.95370 1.42615 1.01509 1.04530 1.89855 1.18959 0.83483 0.92504 1.42245 0.93868 1.25649 0.94479 1.03518 1.01956 1.69919 0.98973 1.35577 1.59022 0.85273 0.77997 0.79225 0.78388 1.19951 1.22426 1.16799 1.22299 0.86282 0.93418 1.00013 1.43795 1.04312 1.11238 1.55727 0.71200 0.87521 0.87385 0.88443 0.80878 0.88057 0.87525 0.92659 0.86108 0.91030 0.89859 0.79400 0.93197 0.90521 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 71.24 0.75 0.40 16 2 C 0.25 3.91 8.12 138.20 1.12 5.03 16 3 N -0.53 -12.75 11.20 -187.39 -2.10 -14.85 16 4 C 0.05 1.41 11.77 84.10 0.99 2.39 16 5 C -0.09 -2.33 6.39 40.01 0.26 -2.08 16 6 C 0.58 19.48 7.64 86.47 0.66 20.14 16 7 O -0.58 -25.55 16.43 -4.29 -0.07 -25.62 16 8 N -0.60 -17.05 2.97 -823.51 -2.45 -19.50 16 9 C 0.08 1.32 5.64 86.36 0.49 1.81 16 10 C -0.12 -2.01 6.08 30.67 0.19 -1.83 16 11 C -0.12 -2.95 5.35 30.62 0.16 -2.79 16 12 C 0.17 6.29 2.92 45.07 0.13 6.42 16 13 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 14 N -0.74 -34.10 4.93 -322.57 -1.59 -35.69 16 15 C -0.24 -14.14 10.41 84.03 0.88 -13.26 16 16 H 0.04 2.89 8.06 -2.91 -0.02 2.86 16 17 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.99 -64.81 13.97 21.65 0.30 -64.51 16 19 Si 0.97 44.90 27.74 68.60 1.90 46.80 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.24 -9.88 6.52 99.48 0.65 -9.23 16 23 C 0.11 3.83 6.02 86.36 0.52 4.35 16 24 N -0.54 -8.29 4.84 -176.11 -0.85 -9.14 16 25 H 0.44 3.44 6.51 -92.71 -0.60 2.83 16 26 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 27 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.17 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.10 1.17 3.81 -2.39 -0.01 1.16 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.37 15.69 5.66 -92.70 -0.52 15.16 16 37 H 0.26 16.13 8.31 -92.71 -0.77 15.35 16 38 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.05 2.20 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -85.80 317.91 1.65 -84.16 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.10 Total: 21.16 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.61 Total: 17.19 kcal Atomic # 7 Polarization: -137.01 SS G_CDS: -6.69 Total: -143.69 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -85.80 1.65 -84.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998746757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.094 kcal (2) G-P(sol) polarization free energy of solvation -85.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds