Wall clock time and date at job start Mon Mar 30 2020 23:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30860 * 125.42182 * 2 1 4 4 C 1.33319 * 109.68909 * 179.78246 * 3 2 1 5 5 C 1.36664 * 107.78437 * 0.37898 * 4 3 2 6 6 C 1.46770 * 126.84704 * 179.89029 * 5 4 3 7 7 O 1.21675 * 119.99818 * 336.88915 * 6 5 4 8 8 N 1.34769 * 119.99792 * 156.88384 * 6 5 4 9 9 C 1.46929 * 120.60902 * 353.20990 * 8 6 5 10 10 C 1.53193 * 108.77456 * 233.57835 * 9 8 6 11 11 C 1.53051 * 109.33640 * 305.41213 * 10 9 8 12 12 C 1.53041 * 109.53450 * 61.35028 * 11 10 9 13 13 H 1.08993 * 109.50153 * 58.58394 * 12 11 10 14 14 N 1.46503 * 109.49389 * 178.64921 * 12 11 10 15 15 C 1.36933 * 120.00094 * 204.99569 * 14 12 11 16 16 H 1.08005 * 120.00122 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00391 * 180.02562 * 15 14 12 18 18 N 1.31615 * 120.00194 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99499 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46604 * 90.00317 * 19 17 15 21 21 H 1.48494 * 109.46773 * 209.99759 * 19 17 15 22 22 H 1.48496 * 109.47317 * 330.00011 * 19 17 15 23 23 C 1.46932 * 120.62743 * 173.23250 * 8 6 5 24 24 N 1.34496 * 125.41962 * 180.02562 * 2 1 3 25 25 H 0.97002 * 126.47335 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47435 * 269.97195 * 1 2 3 27 27 H 1.09003 * 109.46921 * 29.97910 * 1 2 3 28 28 H 1.09003 * 109.47277 * 149.97324 * 1 2 3 29 29 H 1.07990 * 126.11039 * 180.28087 * 4 3 2 30 30 H 1.08999 * 109.56309 * 113.80551 * 9 8 6 31 31 H 1.08996 * 109.61509 * 353.37738 * 9 8 6 32 32 H 1.08998 * 109.50374 * 185.44830 * 10 9 8 33 33 H 1.09001 * 109.49986 * 65.37668 * 10 9 8 34 34 H 1.09000 * 109.45843 * 181.36959 * 11 10 9 35 35 H 1.08999 * 109.45941 * 301.32610 * 11 10 9 36 36 H 0.97002 * 120.00074 * 24.99728 * 14 12 11 37 37 H 0.97001 * 120.00093 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.58323 * 6.60232 * 23 8 6 39 39 H 1.08998 * 109.70183 * 246.24775 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0048 5 6 3.5976 -0.6609 -0.0007 6 6 4.8029 -1.4984 -0.0005 7 8 5.8567 -1.0479 -0.4092 8 7 4.7423 -2.7663 0.4523 9 6 3.5185 -3.2771 1.0849 10 6 3.8781 -3.8594 2.4555 11 6 4.9832 -4.9049 2.2878 12 6 6.2315 -4.2406 1.7025 13 1 6.5603 -3.4383 2.3630 14 7 7.2992 -5.2353 1.5724 15 6 8.6094 -4.8373 1.5720 16 1 8.8558 -3.7901 1.6679 17 6 9.6211 -5.7797 1.4482 18 7 10.8805 -5.3972 1.4482 19 14 9.1950 -7.5909 1.2815 20 1 9.0403 -7.9327 -0.1553 21 1 10.2830 -8.4116 1.8712 22 1 7.9231 -7.8680 1.9960 23 6 5.8988 -3.6633 0.3231 24 7 2.2864 -1.0960 -0.0005 25 1 1.9849 -2.0180 -0.0013 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5143 29 1 4.3978 1.3721 0.0102 30 1 3.0824 -4.0563 0.4599 31 1 2.8041 -2.4634 1.2098 32 1 2.9973 -4.3283 2.8941 33 1 4.2289 -3.0609 3.1094 34 1 5.2236 -5.3380 3.2587 35 1 4.6405 -5.6907 1.6147 36 1 7.0780 -6.1759 1.4866 37 1 11.5874 -6.0558 1.3621 38 1 6.7545 -3.1041 -0.0551 39 1 5.6596 -4.4745 -0.3645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998746764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:59 Heat of formation + Delta-G solvation = 49.993344 kcal Electronic energy + Delta-G solvation = -21809.913505 eV Core-core repulsion = 18561.329878 eV Total energy + Delta-G solvation = -3248.583627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53048 -39.74977 -37.45074 -34.87034 -33.10381 -32.39414 -32.03043 -31.38461 -28.99589 -27.73816 -25.40634 -24.04533 -22.52992 -21.85582 -21.34468 -20.38987 -19.66724 -17.67635 -17.61190 -16.56192 -15.92909 -15.84090 -14.96017 -14.69434 -14.49982 -14.26289 -13.96851 -13.77409 -13.53839 -13.24899 -13.11426 -12.83731 -12.77784 -12.72961 -12.48009 -11.76643 -11.37542 -11.00946 -10.86295 -10.78190 -10.52204 -10.36110 -10.21260 -9.98520 -9.93673 -9.62030 -9.19360 -8.73925 -8.46783 -7.35172 -5.80409 -3.18627 1.19773 2.52402 2.67123 2.96257 3.32519 3.32924 3.35223 3.41721 4.07201 4.39756 4.52473 4.54513 4.68785 4.81592 4.93232 5.05163 5.11016 5.18450 5.20637 5.32619 5.38033 5.49993 5.59741 5.62324 5.69680 5.76391 5.90545 5.95614 6.11635 6.27344 6.36973 6.50972 6.63431 6.79757 6.93602 7.39824 7.71790 7.94794 8.17169 8.37956 9.14618 9.85988 10.03949 11.37473 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.004058 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.856486 B = 6898.648987 C = 7459.031012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.226 3.774 3 N -0.494 5.494 4 C 0.064 3.936 5 C -0.077 4.077 6 C 0.589 3.411 7 O -0.518 6.518 8 N -0.606 5.606 9 C 0.090 3.910 10 C -0.127 4.127 11 C -0.129 4.129 12 C 0.173 3.827 13 H 0.061 0.939 14 N -0.742 5.742 15 C -0.251 4.251 16 H 0.093 0.907 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.093 3.907 24 N -0.555 5.555 25 H 0.424 0.576 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.099 0.901 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.798 5.057 -0.857 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.037 4.037 3 N -0.215 5.215 4 C -0.089 4.089 5 C -0.193 4.193 6 C 0.375 3.625 7 O -0.393 6.393 8 N -0.339 5.339 9 C -0.033 4.033 10 C -0.166 4.166 11 C -0.168 4.168 12 C 0.062 3.938 13 H 0.079 0.921 14 N -0.384 5.384 15 C -0.380 4.380 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.576 5.576 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.031 4.031 24 N -0.165 5.165 25 H 0.267 0.733 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.201 0.799 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.204 6.210 -1.071 25.011 hybrid contribution 0.004 -2.715 -0.144 2.719 sum -24.200 3.495 -1.216 24.482 Atomic orbital electron populations 1.20284 0.84354 1.04458 1.03996 1.23484 0.95886 0.81855 1.02519 1.70174 1.02152 1.28293 1.20849 1.22651 0.94717 0.91223 1.00278 1.21269 0.83729 0.96046 1.18240 1.16963 0.86378 0.80816 0.78305 1.90886 1.29186 1.71660 1.47523 1.48157 1.15348 1.11613 1.58831 1.22103 0.87232 0.98849 0.95158 1.21845 0.99364 0.99513 0.95886 1.21871 0.95312 0.97672 1.01924 1.20456 0.87573 0.92462 0.93311 0.92067 1.42713 1.02676 1.03889 1.89088 1.19108 0.80511 0.95256 1.43163 0.88967 1.24689 0.95031 0.97431 1.01648 1.69703 0.98214 1.33146 1.56555 0.86562 0.77276 0.86831 0.77892 1.21030 1.21656 1.20348 1.22767 0.87353 0.92244 1.00691 1.43933 1.06162 1.10260 1.56161 0.73292 0.89613 0.88713 0.90547 0.79923 0.91211 0.90309 0.90786 0.91133 0.91094 0.92099 0.80459 0.92942 0.88282 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.23 2.14 8.12 -155.61 -1.26 0.87 16 3 N -0.49 -6.25 11.20 -10.59 -0.12 -6.37 16 4 C 0.06 0.87 11.73 -17.48 -0.21 0.66 16 5 C -0.08 -1.02 6.40 -82.14 -0.53 -1.54 16 6 C 0.59 9.49 7.63 -12.82 -0.10 9.39 16 7 O -0.52 -10.53 16.40 5.21 0.09 -10.44 16 8 N -0.61 -8.76 2.97 -174.28 -0.52 -9.28 16 9 C 0.09 0.90 5.38 -3.71 -0.02 0.88 16 10 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 11 C -0.13 -1.79 5.36 -26.68 -0.14 -1.94 16 12 C 0.17 3.20 2.92 -67.81 -0.20 3.00 16 13 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 14 N -0.74 -16.98 4.93 -53.31 -0.26 -17.24 16 15 C -0.25 -7.02 10.41 -15.06 -0.16 -7.18 16 16 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 17 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 18 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 19 Si 0.88 21.68 27.74 -169.99 -4.71 16.97 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 23 C 0.09 1.66 6.03 -3.71 -0.02 1.63 16 24 N -0.55 -5.15 4.84 -7.02 -0.03 -5.18 16 25 H 0.42 2.69 6.45 -40.82 -0.26 2.43 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.64 4.15 -51.93 -0.22 0.43 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.10 2.13 7.00 -51.93 -0.36 1.76 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -35.26 317.90 -7.82 -43.08 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.31 Total: 7.65 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.51 Total: 4.46 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.16 Total: -66.51 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.26 -7.82 -43.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998746764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.076 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds