Wall clock time and date at job start Mon Mar 30 2020 23:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30860 * 125.42182 * 2 1 4 4 C 1.33319 * 109.68909 * 179.78246 * 3 2 1 5 5 C 1.36664 * 107.78437 * 0.37898 * 4 3 2 6 6 C 1.46770 * 126.84704 * 179.89029 * 5 4 3 7 7 O 1.21675 * 119.99818 * 336.88915 * 6 5 4 8 8 N 1.34769 * 119.99792 * 156.88384 * 6 5 4 9 9 C 1.46929 * 120.60902 * 353.20990 * 8 6 5 10 10 C 1.53193 * 108.77456 * 233.57835 * 9 8 6 11 11 C 1.53051 * 109.33640 * 305.41213 * 10 9 8 12 12 C 1.53041 * 109.53450 * 61.35028 * 11 10 9 13 13 H 1.08993 * 109.50153 * 58.58394 * 12 11 10 14 14 N 1.46503 * 109.49389 * 178.64921 * 12 11 10 15 15 C 1.36933 * 120.00094 * 204.99569 * 14 12 11 16 16 H 1.08005 * 120.00122 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00391 * 180.02562 * 15 14 12 18 18 N 1.31615 * 120.00194 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99499 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46604 * 90.00317 * 19 17 15 21 21 H 1.48494 * 109.46773 * 209.99759 * 19 17 15 22 22 H 1.48496 * 109.47317 * 330.00011 * 19 17 15 23 23 C 1.46932 * 120.62743 * 173.23250 * 8 6 5 24 24 N 1.34496 * 125.41962 * 180.02562 * 2 1 3 25 25 H 0.97002 * 126.47335 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47435 * 269.97195 * 1 2 3 27 27 H 1.09003 * 109.46921 * 29.97910 * 1 2 3 28 28 H 1.09003 * 109.47277 * 149.97324 * 1 2 3 29 29 H 1.07990 * 126.11039 * 180.28087 * 4 3 2 30 30 H 1.08999 * 109.56309 * 113.80551 * 9 8 6 31 31 H 1.08996 * 109.61509 * 353.37738 * 9 8 6 32 32 H 1.08998 * 109.50374 * 185.44830 * 10 9 8 33 33 H 1.09001 * 109.49986 * 65.37668 * 10 9 8 34 34 H 1.09000 * 109.45843 * 181.36959 * 11 10 9 35 35 H 1.08999 * 109.45941 * 301.32610 * 11 10 9 36 36 H 0.97002 * 120.00074 * 24.99728 * 14 12 11 37 37 H 0.97001 * 120.00093 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.58323 * 6.60232 * 23 8 6 39 39 H 1.08998 * 109.70183 * 246.24775 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0048 5 6 3.5976 -0.6609 -0.0007 6 6 4.8029 -1.4984 -0.0005 7 8 5.8567 -1.0479 -0.4092 8 7 4.7423 -2.7663 0.4523 9 6 3.5185 -3.2771 1.0849 10 6 3.8781 -3.8594 2.4555 11 6 4.9832 -4.9049 2.2878 12 6 6.2315 -4.2406 1.7025 13 1 6.5603 -3.4383 2.3630 14 7 7.2992 -5.2353 1.5724 15 6 8.6094 -4.8373 1.5720 16 1 8.8558 -3.7901 1.6679 17 6 9.6211 -5.7797 1.4482 18 7 10.8805 -5.3972 1.4482 19 14 9.1950 -7.5909 1.2815 20 1 9.0403 -7.9327 -0.1553 21 1 10.2830 -8.4116 1.8712 22 1 7.9231 -7.8680 1.9960 23 6 5.8988 -3.6633 0.3231 24 7 2.2864 -1.0960 -0.0005 25 1 1.9849 -2.0180 -0.0013 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5143 29 1 4.3978 1.3721 0.0102 30 1 3.0824 -4.0563 0.4599 31 1 2.8041 -2.4634 1.2098 32 1 2.9973 -4.3283 2.8941 33 1 4.2289 -3.0609 3.1094 34 1 5.2236 -5.3380 3.2587 35 1 4.6405 -5.6907 1.6147 36 1 7.0780 -6.1759 1.4866 37 1 11.5874 -6.0558 1.3621 38 1 6.7545 -3.1041 -0.0551 39 1 5.6596 -4.4745 -0.3645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998746764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:58 Heat of formation + Delta-G solvation = 23.392167 kcal Electronic energy + Delta-G solvation = -21811.067019 eV Core-core repulsion = 18561.329878 eV Total energy + Delta-G solvation = -3249.737141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.43422 -40.97819 -38.81227 -36.49225 -34.39410 -33.60693 -33.01775 -32.79394 -30.54356 -28.60854 -26.50397 -25.78624 -23.58679 -23.31058 -22.29305 -21.64033 -20.76227 -19.62331 -18.74359 -17.60357 -17.12069 -16.95830 -16.55651 -16.05121 -15.73056 -15.49312 -15.20368 -14.94748 -14.82610 -14.34416 -14.28342 -14.10965 -13.92307 -13.50457 -13.30893 -13.19919 -12.99529 -12.64293 -12.15528 -12.02430 -11.99408 -11.84982 -11.53362 -11.43937 -11.21605 -11.10343 -11.05238 -10.02149 -9.57924 -9.29133 -8.05841 -5.42919 0.20282 1.35539 1.41692 1.48912 1.60970 1.65645 1.94593 2.23135 2.46191 3.24128 3.29961 3.43879 3.55178 3.86414 3.89335 3.93491 4.06332 4.18413 4.24770 4.28849 4.43104 4.56521 4.61416 4.76209 4.80470 4.81262 4.85018 4.93657 5.05883 5.15506 5.29679 5.34212 5.37771 5.43657 5.72392 6.17077 6.20407 6.27691 6.83389 6.93568 7.03170 7.74612 7.97584 9.16012 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.004058 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.856486 B = 6898.648987 C = 7459.031012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.249 3.751 3 N -0.527 5.527 4 C 0.053 3.947 5 C -0.092 4.092 6 C 0.584 3.416 7 O -0.578 6.578 8 N -0.601 5.601 9 C 0.084 3.916 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.168 3.832 13 H 0.026 0.974 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.043 0.957 17 C -0.065 4.065 18 N -0.986 5.986 19 Si 0.965 3.035 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.241 1.241 23 C 0.105 3.895 24 N -0.538 5.538 25 H 0.440 0.560 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.174 0.826 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.372 0.628 37 H 0.259 0.741 38 H 0.046 0.954 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.141 2.625 -0.581 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 N -0.248 5.248 4 C -0.100 4.100 5 C -0.208 4.208 6 C 0.373 3.627 7 O -0.458 6.458 8 N -0.333 5.333 9 C -0.037 4.037 10 C -0.159 4.159 11 C -0.159 4.159 12 C 0.059 3.941 13 H 0.044 0.956 14 N -0.385 5.385 15 C -0.372 4.372 16 H 0.061 0.939 17 C -0.256 4.256 18 N -0.635 5.635 19 Si 0.791 3.209 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.165 1.165 23 C -0.020 4.020 24 N -0.150 5.150 25 H 0.287 0.713 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.192 0.808 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.206 0.794 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -29.667 3.753 -0.771 29.913 hybrid contribution 1.584 -1.788 -0.211 2.398 sum -28.083 1.964 -0.981 28.169 Atomic orbital electron populations 1.20587 0.80454 1.06185 1.05844 1.24435 0.97581 0.80845 0.98622 1.70208 1.01782 1.30030 1.22770 1.22707 0.95406 0.91610 1.00293 1.20636 0.84256 0.95305 1.20565 1.17382 0.86622 0.81234 0.77444 1.90852 1.31666 1.72975 1.50270 1.48166 1.15909 1.10731 1.58538 1.22532 0.85372 1.00613 0.95193 1.21858 0.99719 0.98268 0.96059 1.21800 0.93462 0.98789 1.01819 1.20638 0.88814 0.91321 0.93330 0.95552 1.42603 1.01555 1.05147 1.89218 1.18955 0.83282 0.93157 1.41791 0.93940 1.25656 0.94605 1.03415 1.01951 1.69924 0.99769 1.35091 1.58736 0.85275 0.78221 0.79067 0.78340 1.20275 1.22286 1.16523 1.22279 0.87334 0.92332 1.00035 1.43764 1.04337 1.11280 1.55643 0.71272 0.87501 0.88433 0.87392 0.80834 0.87437 0.88115 0.86083 0.92742 0.91195 0.89747 0.79386 0.93199 0.93544 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.51 71.23 0.75 0.40 16 2 C 0.25 3.90 8.12 138.19 1.12 5.02 16 3 N -0.53 -12.68 11.20 -187.40 -2.10 -14.78 16 4 C 0.05 1.47 11.73 84.10 0.99 2.45 16 5 C -0.09 -2.37 6.40 40.01 0.26 -2.11 16 6 C 0.58 19.48 7.63 86.47 0.66 20.14 16 7 O -0.58 -25.61 16.40 -4.27 -0.07 -25.68 16 8 N -0.60 -17.04 2.97 -823.52 -2.45 -19.49 16 9 C 0.08 1.33 5.38 86.36 0.46 1.79 16 10 C -0.12 -2.02 6.08 30.68 0.19 -1.83 16 11 C -0.12 -2.95 5.36 30.62 0.16 -2.79 16 12 C 0.17 6.30 2.92 45.07 0.13 6.43 16 13 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 14 N -0.74 -34.14 4.93 -322.57 -1.59 -35.73 16 15 C -0.24 -14.16 10.41 84.03 0.88 -13.29 16 16 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 17 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 18 N -0.99 -64.92 13.97 21.65 0.30 -64.62 16 19 Si 0.97 44.87 27.74 68.60 1.90 46.78 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 22 H -0.24 -9.69 6.52 99.48 0.65 -9.04 16 23 C 0.11 3.83 6.03 86.36 0.52 4.35 16 24 N -0.54 -8.25 4.84 -176.11 -0.85 -9.11 16 25 H 0.44 3.44 6.45 -92.71 -0.60 2.84 16 26 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.17 4.83 8.06 -2.92 -0.02 4.81 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.17 4.15 -2.39 -0.01 1.16 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.37 15.67 5.66 -92.71 -0.52 15.15 16 37 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 38 H 0.05 2.17 7.00 -2.39 -0.02 2.15 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -86.08 317.90 1.63 -84.45 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.10 Total: 21.04 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.58 Total: 17.14 kcal Atomic # 7 Polarization: -137.04 SS G_CDS: -6.69 Total: -143.73 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.78 kcal Total: -86.08 1.63 -84.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998746764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.841 kcal (2) G-P(sol) polarization free energy of solvation -86.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds