Wall clock time and date at job start Tue Mar 31 2020 00:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47298 * 2 1 4 4 C 1.35366 * 126.38869 * 274.98895 * 3 2 1 5 5 C 1.41499 * 105.50238 * 180.02562 * 4 3 2 6 6 C 1.47717 * 126.51593 * 180.02562 * 5 4 3 7 7 O 1.21578 * 119.99865 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99902 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99682 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.88207 * 31.13025 * 9 8 6 11 11 C 1.55155 * 110.99889 * 155.00308 * 9 8 6 12 12 C 1.54321 * 102.94427 * 153.57938 * 11 9 8 13 13 N 1.47031 * 107.26609 * 337.80770 * 12 11 9 14 14 C 1.36933 * 125.64576 * 178.96180 * 13 12 11 15 15 H 1.08005 * 119.99944 * 174.79751 * 14 13 12 16 16 C 1.38820 * 120.00281 * 354.79663 * 14 13 12 17 17 N 1.31617 * 119.99827 * 7.05688 * 16 14 13 18 18 Si 1.86799 * 120.00036 * 187.05994 * 16 14 13 19 19 H 1.48499 * 109.47121 * 94.98348 * 18 16 14 20 20 H 1.48497 * 109.46708 * 214.98710 * 18 16 14 21 21 H 1.48502 * 109.47096 * 334.98350 * 18 16 14 22 22 C 1.47425 * 108.70349 * 358.93767 * 13 12 11 23 23 N 1.31805 * 106.96598 * 359.97438 * 5 4 3 24 24 N 1.28462 * 110.07169 * 359.97438 * 23 5 4 25 25 H 0.97006 * 124.88231 * 180.02562 * 24 23 5 26 26 H 1.08996 * 109.47368 * 59.99668 * 1 2 3 27 27 H 1.09000 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46719 * 299.99645 * 1 2 3 29 29 H 1.09002 * 109.46719 * 240.00355 * 2 1 3 30 30 H 1.08996 * 109.47368 * 120.00332 * 2 1 3 31 31 H 1.07999 * 127.24641 * 0.03250 * 4 3 2 32 32 H 0.96996 * 119.99973 * 0.02562 * 8 6 5 33 33 H 1.08998 * 110.72436 * 271.94528 * 11 9 8 34 34 H 1.08998 * 110.72288 * 35.04078 * 11 9 8 35 35 H 1.08999 * 109.88571 * 97.22241 * 12 11 9 36 36 H 1.08995 * 109.88895 * 218.39402 * 12 11 9 37 37 H 0.96998 * 119.99963 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.36671 * 265.28903 * 22 13 12 39 39 H 1.09003 * 110.36159 * 142.96297 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2107 2.2095 -1.0856 5 6 2.6933 3.4411 -0.5831 6 6 3.0427 4.6375 -1.3758 7 8 2.9244 4.6209 -2.5857 8 7 3.4925 5.7476 -0.7579 9 6 3.8395 6.9340 -1.5443 10 1 3.2203 7.0021 -2.4387 11 6 3.7228 8.2224 -0.6877 12 6 4.7174 9.1837 -1.3720 13 7 5.6790 8.3585 -2.1178 14 6 6.7137 8.8313 -2.8800 15 1 7.4176 8.1418 -3.3223 16 6 6.8580 10.1968 -3.0843 17 7 6.0876 11.0442 -2.4357 18 14 8.1455 10.8314 -4.2796 19 1 7.5197 11.0576 -5.6072 20 1 8.7050 12.1098 -3.7717 21 1 9.2355 9.8313 -4.4102 22 6 5.3451 6.9379 -1.9085 23 7 2.7709 3.3181 0.7269 24 7 2.3877 2.1448 1.0830 25 1 2.3584 1.8247 1.9983 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.0238 1.9528 -2.1178 32 1 3.5873 5.7607 0.2073 33 1 2.7097 8.6224 -0.7287 34 1 4.0177 8.0281 0.3434 35 1 4.1843 9.8424 -2.0576 36 1 5.2405 9.7736 -0.6194 37 1 6.1882 11.9983 -2.5787 38 1 5.9347 6.5264 -1.0893 39 1 5.5157 6.3695 -2.8228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010286911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:25 Heat of formation + Delta-G solvation = 56.437274 kcal Electronic energy + Delta-G solvation = -21014.583603 eV Core-core repulsion = 17766.279405 eV Total energy + Delta-G solvation = -3248.304198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -42.85237 -39.27577 -37.09732 -34.69433 -33.90702 -32.19820 -31.58051 -29.63477 -29.05174 -27.15576 -24.77806 -24.14140 -23.51188 -21.26707 -20.32313 -20.20698 -19.64522 -17.88701 -17.12478 -16.57280 -15.94380 -15.71936 -14.83903 -14.58244 -14.39159 -14.24481 -13.97255 -13.81410 -13.54811 -12.87484 -12.74802 -12.35203 -12.15803 -12.01739 -11.73949 -11.61595 -10.98961 -10.94422 -10.87982 -10.70120 -10.34170 -10.05322 -9.83751 -9.82207 -9.65121 -9.53224 -9.17072 -8.64174 -8.51855 -6.78102 -5.67673 -2.99582 1.51283 1.95326 2.63185 3.39181 3.45876 3.50821 3.52583 3.56085 4.24551 4.35144 4.53785 4.58593 4.81257 5.05720 5.16087 5.30188 5.38776 5.45535 5.48948 5.50192 5.66724 5.72349 5.78078 5.83143 5.87404 6.21653 6.26953 6.40467 6.49916 6.66206 6.74533 6.77724 7.05715 7.56931 7.60358 7.65549 7.84507 7.91377 8.29742 8.46317 9.26713 9.86898 10.52776 11.44764 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047178 B = 0.003047 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.354567 B = 9187.383404 C = 9427.716343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.175 4.175 5 C -0.003 4.003 6 C 0.599 3.401 7 O -0.532 6.532 8 N -0.702 5.702 9 C 0.126 3.874 10 H 0.099 0.901 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.226 4.226 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.129 3.871 23 N -0.259 5.259 24 N -0.382 5.382 25 H 0.443 0.557 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.403 0.597 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.252 0.748 38 H 0.020 0.980 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 -21.103 9.616 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.203 4.203 5 C -0.164 4.164 6 C 0.382 3.618 7 O -0.406 6.406 8 N -0.352 5.352 9 C 0.021 3.979 10 H 0.117 0.883 11 C -0.188 4.188 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.354 4.354 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.002 3.998 23 N -0.095 5.095 24 N -0.096 5.096 25 H 0.287 0.713 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.160 -20.255 9.572 25.028 hybrid contribution 0.517 -0.186 -0.231 0.596 sum -10.643 -20.441 9.340 24.866 Atomic orbital electron populations 1.21788 0.94016 1.02239 1.02731 1.20110 0.96434 0.88696 1.03993 1.21434 1.05678 0.96863 0.87375 1.21527 1.06637 0.92313 0.99834 1.22072 1.07549 0.97053 0.89771 1.16906 0.77232 0.81242 0.86401 1.90810 1.54133 1.82608 1.13086 1.45874 1.65357 1.12960 1.11016 1.22366 0.97802 0.82804 0.94894 0.88302 1.23179 1.00983 0.95875 0.98753 1.21157 0.88546 0.90657 0.94286 1.44398 1.33001 0.99060 1.56637 1.19082 1.02769 0.90958 1.22605 0.90352 1.24823 0.99642 0.95798 1.00185 1.69964 1.41678 1.01444 1.43858 0.86098 0.80597 0.78156 0.80953 1.21580 1.21824 1.20636 1.21834 0.91609 0.88140 0.98264 1.73560 1.18178 1.02560 1.15232 1.43290 1.47790 1.08734 1.09773 0.71309 0.91770 0.91753 0.92721 0.88977 0.90689 0.82036 0.76217 0.91568 0.91999 0.93050 0.93762 0.93764 0.96245 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.15 0.37 -0.33 16 2 C -0.05 -0.26 6.49 -27.89 -0.18 -0.44 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.07 10.73 -39.36 -0.42 -2.49 16 5 C 0.00 -0.04 7.13 -82.76 -0.59 -0.63 16 6 C 0.60 10.26 7.83 -12.39 -0.10 10.16 16 7 O -0.53 -10.83 16.57 5.30 0.09 -10.75 16 8 N -0.70 -11.50 5.19 -52.71 -0.27 -11.78 16 9 C 0.13 2.44 3.42 -65.78 -0.23 2.22 16 10 H 0.10 2.07 7.54 -51.93 -0.39 1.68 16 11 C -0.15 -2.82 6.60 -24.90 -0.16 -2.98 16 12 C 0.18 4.41 5.38 -3.06 -0.02 4.40 16 13 N -0.60 -16.10 3.39 -170.07 -0.58 -16.68 16 14 C -0.23 -6.53 10.27 -15.06 -0.15 -6.69 16 15 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 16 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 17 N -0.92 -27.55 10.36 55.49 0.57 -26.98 16 18 Si 0.91 22.67 29.56 -169.99 -5.02 17.64 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.13 2.91 6.93 -2.53 -0.02 2.89 16 23 N -0.26 -3.15 11.92 33.42 0.40 -2.75 16 24 N -0.38 -3.25 6.83 33.50 0.23 -3.02 16 25 H 0.44 2.06 8.96 -190.44 -1.71 0.35 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.40 5.77 8.29 -40.82 -0.34 5.43 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.05 8.00 -51.93 -0.42 0.64 16 35 H 0.05 1.39 7.30 -51.93 -0.38 1.02 16 36 H 0.04 1.19 7.61 -51.93 -0.40 0.79 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -34.59 328.81 -8.74 -43.33 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.98 Total: 0.70 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.13 Total: 5.33 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.35 Total: -61.20 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.59 -8.74 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010286911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.764 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds