Wall clock time and date at job start Tue Mar 31 2020 00:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47298 * 2 1 4 4 C 1.35366 * 126.38869 * 274.98895 * 3 2 1 5 5 C 1.41499 * 105.50238 * 180.02562 * 4 3 2 6 6 C 1.47717 * 126.51593 * 180.02562 * 5 4 3 7 7 O 1.21578 * 119.99865 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99902 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99682 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.88207 * 31.13025 * 9 8 6 11 11 C 1.55155 * 110.99889 * 155.00308 * 9 8 6 12 12 C 1.54321 * 102.94427 * 153.57938 * 11 9 8 13 13 N 1.47031 * 107.26609 * 337.80770 * 12 11 9 14 14 C 1.36933 * 125.64576 * 178.96180 * 13 12 11 15 15 H 1.08005 * 119.99944 * 174.79751 * 14 13 12 16 16 C 1.38820 * 120.00281 * 354.79663 * 14 13 12 17 17 N 1.31617 * 119.99827 * 7.05688 * 16 14 13 18 18 Si 1.86799 * 120.00036 * 187.05994 * 16 14 13 19 19 H 1.48499 * 109.47121 * 94.98348 * 18 16 14 20 20 H 1.48497 * 109.46708 * 214.98710 * 18 16 14 21 21 H 1.48502 * 109.47096 * 334.98350 * 18 16 14 22 22 C 1.47425 * 108.70349 * 358.93767 * 13 12 11 23 23 N 1.31805 * 106.96598 * 359.97438 * 5 4 3 24 24 N 1.28462 * 110.07169 * 359.97438 * 23 5 4 25 25 H 0.97006 * 124.88231 * 180.02562 * 24 23 5 26 26 H 1.08996 * 109.47368 * 59.99668 * 1 2 3 27 27 H 1.09000 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46719 * 299.99645 * 1 2 3 29 29 H 1.09002 * 109.46719 * 240.00355 * 2 1 3 30 30 H 1.08996 * 109.47368 * 120.00332 * 2 1 3 31 31 H 1.07999 * 127.24641 * 0.03250 * 4 3 2 32 32 H 0.96996 * 119.99973 * 0.02562 * 8 6 5 33 33 H 1.08998 * 110.72436 * 271.94528 * 11 9 8 34 34 H 1.08998 * 110.72288 * 35.04078 * 11 9 8 35 35 H 1.08999 * 109.88571 * 97.22241 * 12 11 9 36 36 H 1.08995 * 109.88895 * 218.39402 * 12 11 9 37 37 H 0.96998 * 119.99963 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.36671 * 265.28903 * 22 13 12 39 39 H 1.09003 * 110.36159 * 142.96297 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2107 2.2095 -1.0856 5 6 2.6933 3.4411 -0.5831 6 6 3.0427 4.6375 -1.3758 7 8 2.9244 4.6209 -2.5857 8 7 3.4925 5.7476 -0.7579 9 6 3.8395 6.9340 -1.5443 10 1 3.2203 7.0021 -2.4387 11 6 3.7228 8.2224 -0.6877 12 6 4.7174 9.1837 -1.3720 13 7 5.6790 8.3585 -2.1178 14 6 6.7137 8.8313 -2.8800 15 1 7.4176 8.1418 -3.3223 16 6 6.8580 10.1968 -3.0843 17 7 6.0876 11.0442 -2.4357 18 14 8.1455 10.8314 -4.2796 19 1 7.5197 11.0576 -5.6072 20 1 8.7050 12.1098 -3.7717 21 1 9.2355 9.8313 -4.4102 22 6 5.3451 6.9379 -1.9085 23 7 2.7709 3.3181 0.7269 24 7 2.3877 2.1448 1.0830 25 1 2.3584 1.8247 1.9983 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.0238 1.9528 -2.1178 32 1 3.5873 5.7607 0.2073 33 1 2.7097 8.6224 -0.7287 34 1 4.0177 8.0281 0.3434 35 1 4.1843 9.8424 -2.0576 36 1 5.2405 9.7736 -0.6194 37 1 6.1882 11.9983 -2.5787 38 1 5.9347 6.5264 -1.0893 39 1 5.5157 6.3695 -2.8228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010286911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:25 Heat of formation + Delta-G solvation = 31.148534 kcal Electronic energy + Delta-G solvation = -21015.680205 eV Core-core repulsion = 17766.279405 eV Total energy + Delta-G solvation = -3249.400800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.70594 -40.73444 -38.85303 -35.68802 -35.16820 -33.82830 -32.82467 -31.04665 -30.27257 -28.91137 -26.65849 -24.98850 -24.55992 -22.16066 -22.03875 -21.81828 -21.05759 -19.00883 -18.65704 -17.91349 -17.30122 -16.85165 -16.67271 -15.99574 -15.56539 -15.44428 -15.25789 -14.89101 -14.54479 -14.21877 -14.13774 -13.98478 -13.69020 -13.29824 -12.96513 -12.79416 -12.50159 -12.43339 -12.16637 -12.07831 -12.02097 -11.83872 -11.73431 -11.58955 -11.26055 -10.70452 -10.49919 -10.09761 -9.95761 -8.93000 -7.88178 -5.23240 0.48286 1.10911 1.45357 1.48450 1.56920 1.83107 2.18749 2.32747 2.50371 3.30188 3.34328 3.66042 3.69018 3.80104 4.03686 4.03816 4.18635 4.35952 4.44329 4.53842 4.57292 4.69803 4.72288 4.83243 4.86013 4.96140 5.05048 5.10381 5.22352 5.30056 5.41133 5.42613 5.48804 5.62474 5.72274 6.10286 6.17539 6.46334 6.86704 7.07900 7.14808 7.73092 8.37638 9.22729 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047178 B = 0.003047 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.354567 B = 9187.383404 C = 9427.716343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.038 3.962 4 C -0.201 4.201 5 C -0.033 4.033 6 C 0.598 3.402 7 O -0.572 6.572 8 N -0.691 5.691 9 C 0.144 3.856 10 H 0.081 0.919 11 C -0.128 4.128 12 C 0.184 3.816 13 N -0.625 5.625 14 C -0.248 4.248 15 H 0.078 0.922 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.980 3.020 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.269 1.269 22 C 0.129 3.871 23 N -0.265 5.265 24 N -0.360 5.360 25 H 0.462 0.538 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.249 0.751 38 H 0.029 0.971 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -23.411 11.190 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.089 4.089 4 C -0.229 4.229 5 C -0.192 4.192 6 C 0.384 3.616 7 O -0.450 6.450 8 N -0.341 5.341 9 C 0.038 3.962 10 H 0.099 0.901 11 C -0.167 4.167 12 C 0.059 3.941 13 N -0.352 5.352 14 C -0.377 4.377 15 H 0.096 0.904 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.808 3.192 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.194 1.194 22 C 0.002 3.998 23 N -0.103 5.103 24 N -0.078 5.078 25 H 0.311 0.689 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.177 0.823 32 H 0.254 0.746 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.693 -22.601 11.202 27.803 hybrid contribution 0.656 0.409 -0.656 1.014 sum -11.038 -22.192 10.546 26.936 Atomic orbital electron populations 1.21784 0.93635 1.03228 1.02058 1.20296 0.96550 0.86255 1.05864 1.21862 1.03123 0.97828 0.86077 1.21687 1.07978 0.92291 1.00941 1.21668 1.10256 0.96685 0.90619 1.17314 0.76170 0.81908 0.86177 1.90780 1.55804 1.83414 1.14991 1.45640 1.65147 1.11990 1.11354 1.21901 0.95126 0.84294 0.94887 0.90059 1.23000 1.00590 0.93821 0.99253 1.20951 0.88797 0.91377 0.92959 1.44681 1.32881 1.00964 1.56717 1.19428 1.03662 0.91463 1.23140 0.90398 1.25681 1.02073 0.95962 1.01826 1.70165 1.43165 1.01360 1.44891 0.85042 0.78317 0.77501 0.78362 1.21380 1.21643 1.19373 1.21917 0.94028 0.86031 0.97825 1.73473 1.18496 1.04157 1.14128 1.43400 1.45802 1.07630 1.10945 0.68947 0.93232 0.89973 0.92660 0.88133 0.87825 0.82280 0.74648 0.89137 0.89279 0.96367 0.96510 0.94127 0.95304 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.23 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.13 16 3 C 0.04 0.55 6.48 41.40 0.27 0.82 16 4 C -0.20 -4.56 10.73 22.41 0.24 -4.32 16 5 C -0.03 -0.91 7.13 42.46 0.30 -0.60 16 6 C 0.60 20.56 7.83 86.75 0.68 21.24 16 7 O -0.57 -23.97 16.57 -3.96 -0.07 -24.04 16 8 N -0.69 -22.15 5.19 -438.94 -2.28 -24.43 16 9 C 0.14 5.57 3.42 46.38 0.16 5.73 16 10 H 0.08 3.48 7.54 -2.39 -0.02 3.46 16 11 C -0.13 -4.72 6.60 31.78 0.21 -4.51 16 12 C 0.18 9.33 5.38 86.73 0.47 9.80 16 13 N -0.63 -34.18 3.39 -691.98 -2.35 -36.53 16 14 C -0.25 -14.69 10.27 84.04 0.86 -13.82 16 15 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 16 C -0.06 -3.66 5.48 84.86 0.46 -3.19 16 17 N -0.95 -58.12 10.36 21.65 0.22 -57.89 16 18 Si 0.98 47.26 29.56 68.60 2.03 49.29 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 22 C 0.13 5.90 6.93 86.85 0.60 6.50 16 23 N -0.27 -5.91 11.92 -48.17 -0.57 -6.48 16 24 N -0.36 -5.06 6.83 -47.93 -0.33 -5.38 16 25 H 0.46 2.54 8.96 -219.99 -1.97 0.57 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.42 11.20 8.29 -92.71 -0.77 10.43 16 33 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.09 2.83 8.00 -2.39 -0.02 2.81 16 35 H 0.02 1.02 7.30 -2.39 -0.02 1.01 16 36 H 0.02 0.93 7.61 -2.39 -0.02 0.91 16 37 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.64 328.81 0.15 -77.49 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -1.67 Total: 10.71 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.16 Total: 17.27 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.31 Total: -130.71 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.64 0.15 -77.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010286911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.639 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds