Wall clock time and date at job start Tue Mar 31 2020 00:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47014 * 2 1 4 4 N 1.30452 * 125.98463 * 270.14208 * 3 2 1 5 5 N 1.39933 * 108.89100 * 180.26466 * 4 3 2 6 6 H 0.97006 * 125.75386 * 179.73519 * 5 4 3 7 7 C 1.34254 * 108.49735 * 359.74568 * 5 4 3 8 8 C 1.38046 * 107.41644 * 0.02562 * 7 5 4 9 9 C 1.47429 * 126.41380 * 179.97438 * 8 7 5 10 10 O 1.21607 * 119.99753 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00319 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00024 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88380 * 328.87404 * 12 11 9 14 14 C 1.55160 * 111.00224 * 204.99642 * 12 11 9 15 15 C 1.54316 * 102.94268 * 206.42392 * 14 12 11 16 16 N 1.47026 * 107.27365 * 22.19228 * 15 14 12 17 17 C 1.36933 * 125.65326 * 180.79632 * 16 15 14 18 18 H 1.08001 * 120.00302 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.99866 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47395 * 60.00020 * 21 19 17 23 23 H 1.48503 * 109.47153 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47373 * 299.99913 * 21 19 17 25 25 C 1.47425 * 108.70074 * 1.05989 * 16 15 14 26 26 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47480 * 300.00543 * 1 2 3 28 28 H 1.09001 * 109.46812 * 60.00415 * 1 2 3 29 29 H 1.08993 * 109.46841 * 239.99434 * 2 1 3 30 30 H 1.09001 * 109.46812 * 119.99585 * 2 1 3 31 31 H 1.08001 * 126.29530 * 179.97438 * 7 5 4 32 32 H 0.97005 * 119.99756 * 359.97438 * 11 9 8 33 33 H 1.08997 * 110.71793 * 88.05722 * 14 12 11 34 34 H 1.09002 * 110.71871 * 324.79069 * 14 12 11 35 35 H 1.09004 * 109.88447 * 262.78098 * 15 14 12 36 36 H 1.09000 * 109.88516 * 141.60887 * 15 14 12 37 37 H 0.97000 * 119.99477 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.36478 * 94.71036 * 25 16 15 39 39 H 1.08998 * 110.36859 * 217.03414 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1443 -1.0556 5 7 2.7379 3.4030 -0.6443 6 1 2.9989 4.1308 -1.2302 7 6 2.7502 3.4335 0.6978 8 6 2.3095 2.2035 1.1432 9 6 2.1608 1.7834 2.5485 10 8 1.7604 0.6653 2.8098 11 7 2.4686 2.6385 3.5437 12 6 2.3213 2.2209 4.9402 13 1 1.5062 1.5053 5.0478 14 6 2.1116 3.4466 5.8681 15 6 2.6518 2.9492 7.2253 16 7 3.5725 1.8370 6.9476 17 6 4.2518 1.1094 7.8879 18 1 4.9080 0.3086 7.5805 19 6 4.0971 1.4012 9.2362 20 7 3.2969 2.3769 9.6107 21 14 5.0243 0.4092 10.5189 22 1 6.4850 0.5439 10.2881 23 1 4.6889 0.9158 11.8740 24 1 4.6364 -1.0205 10.4145 25 6 3.6482 1.6391 5.4886 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0506 4.2669 1.3156 32 1 2.7883 3.5304 3.3353 33 1 1.0534 3.6972 5.9426 34 1 2.6874 4.3016 5.5137 35 1 1.8273 2.6011 7.8475 36 1 3.1853 3.7548 7.7298 37 1 3.1891 2.5810 10.5528 38 1 4.4992 2.1809 5.0759 39 1 3.7228 0.5775 5.2532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015061712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:17 Heat of formation + Delta-G solvation = 55.706317 kcal Electronic energy + Delta-G solvation = -21436.397833 eV Core-core repulsion = 18188.061938 eV Total energy + Delta-G solvation = -3248.335894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.57595 -39.12612 -37.09026 -34.49075 -33.78775 -31.99604 -30.44460 -30.41871 -29.03603 -26.99437 -24.56734 -24.10523 -23.10934 -20.79367 -20.33671 -19.82474 -19.53709 -18.46065 -16.91472 -16.40049 -15.59507 -15.36709 -14.84116 -14.57883 -14.33435 -14.07900 -13.89249 -13.82313 -13.07545 -12.83700 -12.41181 -12.37982 -12.16466 -11.76878 -11.55835 -11.28241 -10.98316 -10.88256 -10.84922 -10.71250 -10.32045 -10.10792 -9.87306 -9.73917 -9.69709 -9.52730 -9.01350 -8.63706 -8.54842 -6.81269 -5.68963 -3.02256 1.34513 2.06350 2.48110 3.42882 3.45731 3.48133 3.50800 3.58373 4.30693 4.44264 4.54357 4.93896 5.14156 5.23064 5.34705 5.37559 5.44684 5.48527 5.57353 5.66865 5.77682 5.83900 5.92986 6.09792 6.20522 6.23031 6.35688 6.37618 6.44476 6.65074 6.74965 6.85944 7.03883 7.34538 7.56130 7.59857 7.79309 7.86182 8.27436 8.53492 9.24484 9.84482 10.49553 11.42914 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.003572 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.191285 B = 7837.637501 C = 8161.697563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.139 3.861 4 N -0.302 5.302 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.101 3.899 8 C -0.280 4.280 9 C 0.589 3.411 10 O -0.537 6.537 11 N -0.715 5.715 12 C 0.130 3.870 13 H 0.098 0.902 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.129 3.871 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.186 0.814 32 H 0.392 0.608 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.252 0.748 38 H 0.018 0.982 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 4.981 -19.650 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.029 4.029 4 N -0.124 5.124 5 N -0.168 5.168 6 H 0.287 0.713 7 C -0.051 4.051 8 C -0.295 4.295 9 C 0.376 3.624 10 O -0.415 6.415 11 N -0.365 5.365 12 C 0.025 3.975 13 H 0.116 0.884 14 C -0.189 4.189 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.002 3.998 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.203 0.797 32 H 0.226 0.774 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.447 4.193 -20.466 21.174 hybrid contribution 0.931 0.670 1.212 1.669 sum -2.516 4.863 -19.254 20.018 Atomic orbital electron populations 1.21612 0.93973 1.02122 1.01904 1.20145 0.96552 0.88005 1.04237 1.22500 0.94802 0.96952 0.88667 1.77154 1.22035 0.90739 1.22506 1.46084 1.51753 1.13556 1.05446 0.71308 1.23168 0.97380 0.98930 0.85652 1.20426 1.18713 0.95399 0.94943 1.17230 0.77113 0.84748 0.83325 1.90757 1.46691 1.19935 1.84093 1.45841 1.67848 1.16504 1.06338 1.22287 0.99825 0.97510 0.77911 0.88392 1.23180 1.00749 0.96360 0.98562 1.21141 0.93291 0.90446 0.89699 1.44385 1.51845 1.37530 0.99337 1.19038 1.19581 1.10959 0.85946 0.90431 1.24795 0.99916 0.98830 0.96897 1.69941 1.40490 1.31635 1.15123 0.86178 0.79252 0.79450 0.80766 1.21215 1.21613 1.21100 1.21827 0.93677 0.98294 0.86036 0.91867 0.92055 0.93148 0.90724 0.87812 0.79734 0.77430 0.91634 0.92183 0.93278 0.93635 0.93725 0.96407 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.60 5.97 -27.88 -0.17 -0.77 16 3 C 0.14 1.77 6.52 -82.02 -0.53 1.24 16 4 N -0.30 -3.57 12.63 33.90 0.43 -3.14 16 5 N -0.46 -3.79 7.29 30.85 0.22 -3.56 16 6 H 0.44 1.91 8.96 -182.72 -1.64 0.27 16 7 C 0.10 0.85 11.52 -16.56 -0.19 0.66 16 8 C -0.28 -3.48 6.13 -105.07 -0.64 -4.12 16 9 C 0.59 8.93 7.81 -12.52 -0.10 8.83 16 10 O -0.54 -10.01 14.56 5.27 0.08 -9.93 16 11 N -0.72 -9.99 5.19 -52.80 -0.27 -10.27 16 12 C 0.13 2.32 3.42 -65.78 -0.23 2.10 16 13 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 14 C -0.15 -2.63 6.60 -24.90 -0.16 -2.79 16 15 C 0.18 4.27 5.37 -3.07 -0.02 4.26 16 16 N -0.60 -15.61 3.39 -170.07 -0.58 -16.19 16 17 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.24 5.49 -17.42 -0.10 -0.33 16 20 N -0.92 -27.10 10.31 55.49 0.57 -26.53 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.41 6.56 -51.93 -0.34 1.07 16 31 H 0.19 0.78 7.46 -52.49 -0.39 0.39 16 32 H 0.39 4.11 7.49 -40.82 -0.31 3.80 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 35 H 0.05 1.30 7.40 -51.93 -0.38 0.92 16 36 H 0.05 1.19 7.49 -51.93 -0.39 0.80 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -34.62 324.21 -8.39 -43.01 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.76 Total: 0.36 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.94 Total: 4.10 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.37 Total: -59.69 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.62 -8.39 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015061712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.712 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds