Wall clock time and date at job start Tue Mar 31 2020 00:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47014 * 2 1 4 4 N 1.30452 * 125.98463 * 270.14208 * 3 2 1 5 5 N 1.39933 * 108.89100 * 180.26466 * 4 3 2 6 6 H 0.97006 * 125.75386 * 179.73519 * 5 4 3 7 7 C 1.34254 * 108.49735 * 359.74568 * 5 4 3 8 8 C 1.38046 * 107.41644 * 0.02562 * 7 5 4 9 9 C 1.47429 * 126.41380 * 179.97438 * 8 7 5 10 10 O 1.21607 * 119.99753 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00319 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00024 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88380 * 328.87404 * 12 11 9 14 14 C 1.55160 * 111.00224 * 204.99642 * 12 11 9 15 15 C 1.54316 * 102.94268 * 206.42392 * 14 12 11 16 16 N 1.47026 * 107.27365 * 22.19228 * 15 14 12 17 17 C 1.36933 * 125.65326 * 180.79632 * 16 15 14 18 18 H 1.08001 * 120.00302 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.99866 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47395 * 60.00020 * 21 19 17 23 23 H 1.48503 * 109.47153 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47373 * 299.99913 * 21 19 17 25 25 C 1.47425 * 108.70074 * 1.05989 * 16 15 14 26 26 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47480 * 300.00543 * 1 2 3 28 28 H 1.09001 * 109.46812 * 60.00415 * 1 2 3 29 29 H 1.08993 * 109.46841 * 239.99434 * 2 1 3 30 30 H 1.09001 * 109.46812 * 119.99585 * 2 1 3 31 31 H 1.08001 * 126.29530 * 179.97438 * 7 5 4 32 32 H 0.97005 * 119.99756 * 359.97438 * 11 9 8 33 33 H 1.08997 * 110.71793 * 88.05722 * 14 12 11 34 34 H 1.09002 * 110.71871 * 324.79069 * 14 12 11 35 35 H 1.09004 * 109.88447 * 262.78098 * 15 14 12 36 36 H 1.09000 * 109.88516 * 141.60887 * 15 14 12 37 37 H 0.97000 * 119.99477 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.36478 * 94.71036 * 25 16 15 39 39 H 1.08998 * 110.36859 * 217.03414 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1443 -1.0556 5 7 2.7379 3.4030 -0.6443 6 1 2.9989 4.1308 -1.2302 7 6 2.7502 3.4335 0.6978 8 6 2.3095 2.2035 1.1432 9 6 2.1608 1.7834 2.5485 10 8 1.7604 0.6653 2.8098 11 7 2.4686 2.6385 3.5437 12 6 2.3213 2.2209 4.9402 13 1 1.5062 1.5053 5.0478 14 6 2.1116 3.4466 5.8681 15 6 2.6518 2.9492 7.2253 16 7 3.5725 1.8370 6.9476 17 6 4.2518 1.1094 7.8879 18 1 4.9080 0.3086 7.5805 19 6 4.0971 1.4012 9.2362 20 7 3.2969 2.3769 9.6107 21 14 5.0243 0.4092 10.5189 22 1 6.4850 0.5439 10.2881 23 1 4.6889 0.9158 11.8740 24 1 4.6364 -1.0205 10.4145 25 6 3.6482 1.6391 5.4886 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0506 4.2669 1.3156 32 1 2.7883 3.5304 3.3353 33 1 1.0534 3.6972 5.9426 34 1 2.6874 4.3016 5.5137 35 1 1.8273 2.6011 7.8475 36 1 3.1853 3.7548 7.7298 37 1 3.1891 2.5810 10.5528 38 1 4.4992 2.1809 5.0759 39 1 3.7228 0.5775 5.2532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015061712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:16 Heat of formation + Delta-G solvation = 30.058743 kcal Electronic energy + Delta-G solvation = -21437.509995 eV Core-core repulsion = 18188.061938 eV Total energy + Delta-G solvation = -3249.448057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40886 -40.41834 -38.70237 -35.69907 -35.03081 -33.77158 -31.61117 -31.27038 -30.70601 -28.65717 -26.45622 -24.99694 -24.18241 -22.13920 -21.97182 -21.19759 -20.48918 -19.41495 -18.79141 -17.59029 -16.98988 -16.57038 -16.30993 -15.92333 -15.64288 -15.29584 -15.15765 -14.93909 -14.45509 -14.13900 -13.90358 -13.86510 -13.62811 -13.26442 -12.94095 -12.72251 -12.43432 -12.34046 -12.18272 -12.05973 -12.03021 -11.80184 -11.75090 -11.52111 -10.78771 -10.68934 -10.52123 -10.10316 -9.71724 -8.88915 -7.84419 -5.20132 0.58445 1.11047 1.46918 1.50395 1.56559 1.82858 2.26334 2.49612 2.53709 3.34069 3.46836 3.73312 3.78304 3.85950 4.11624 4.19387 4.23680 4.30579 4.44774 4.48822 4.57429 4.66861 4.71043 4.79091 4.93293 5.03392 5.06408 5.15747 5.20756 5.30375 5.44642 5.47174 5.62282 5.69158 5.76870 6.21112 6.30271 6.51850 6.77114 7.11657 7.41950 7.77550 8.40723 9.25335 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.003572 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.191285 B = 7837.637501 C = 8161.697563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 C 0.124 3.876 4 N -0.323 5.323 5 N -0.446 5.446 6 H 0.462 0.538 7 C 0.139 3.861 8 C -0.318 4.318 9 C 0.589 3.411 10 O -0.582 6.582 11 N -0.699 5.699 12 C 0.150 3.850 13 H 0.074 0.926 14 C -0.127 4.127 15 C 0.183 3.817 16 N -0.626 5.626 17 C -0.249 4.249 18 H 0.077 0.923 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.128 3.872 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.236 0.764 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.011 0.989 36 H 0.018 0.982 37 H 0.248 0.752 38 H 0.033 0.967 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 6.825 -21.428 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.044 4.044 4 N -0.146 5.146 5 N -0.152 5.152 6 H 0.310 0.690 7 C -0.015 4.015 8 C -0.333 4.333 9 C 0.378 3.622 10 O -0.462 6.462 11 N -0.351 5.351 12 C 0.043 3.957 13 H 0.092 0.908 14 C -0.165 4.165 15 C 0.058 3.942 16 N -0.353 5.353 17 C -0.378 4.378 18 H 0.094 0.906 19 C -0.255 4.255 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.001 3.999 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.252 0.748 32 H 0.252 0.748 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.787 6.082 -22.326 23.307 hybrid contribution 0.766 0.123 1.679 1.849 sum -2.021 6.205 -20.647 21.654 Atomic orbital electron populations 1.21545 0.93428 1.02683 1.01210 1.20099 0.97056 0.88335 1.03604 1.22590 0.95230 0.97284 0.89262 1.77103 1.22878 0.92153 1.22473 1.46133 1.50070 1.12986 1.05965 0.68968 1.23771 0.93685 0.98339 0.85744 1.20245 1.22373 0.97555 0.93097 1.17627 0.75988 0.84070 0.84473 1.90742 1.48657 1.21956 1.84855 1.45501 1.67825 1.17466 1.04269 1.21737 0.96798 0.97008 0.80133 0.90808 1.22991 1.02349 0.96800 0.94394 1.20949 0.91477 0.89015 0.92738 1.44674 1.51871 1.37899 1.00893 1.19396 1.19922 1.11359 0.87084 0.90552 1.25619 1.01033 1.00058 0.98747 1.70155 1.41625 1.32877 1.15010 0.85159 0.78318 0.77990 0.77899 1.20197 1.21651 1.20633 1.21948 0.96189 0.97604 0.84138 0.90762 0.94050 0.92289 0.89528 0.90144 0.74834 0.74814 0.89380 0.88680 0.97050 0.96418 0.94245 0.94930 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.89 71.98 0.71 -2.15 16 2 C -0.05 -1.25 5.97 29.85 0.18 -1.07 16 3 C 0.12 3.03 6.52 43.51 0.28 3.31 16 4 N -0.32 -6.93 12.63 -46.68 -0.59 -7.52 16 5 N -0.45 -5.53 7.29 -56.32 -0.41 -5.94 16 6 H 0.46 1.93 8.96 -213.42 -1.91 0.02 16 7 C 0.14 1.71 11.52 84.28 0.97 2.68 16 8 C -0.32 -7.22 6.13 -20.15 -0.12 -7.35 16 9 C 0.59 17.23 7.81 86.67 0.68 17.90 16 10 O -0.58 -22.18 14.56 -4.05 -0.06 -22.24 16 11 N -0.70 -17.80 5.19 -439.21 -2.28 -20.08 16 12 C 0.15 5.21 3.42 46.38 0.16 5.37 16 13 H 0.07 2.98 7.54 -2.39 -0.02 2.96 16 14 C -0.13 -4.19 6.60 31.78 0.21 -3.98 16 15 C 0.18 8.87 5.37 86.73 0.47 9.33 16 16 N -0.63 -32.96 3.39 -691.98 -2.35 -35.31 16 17 C -0.25 -14.40 10.28 84.04 0.86 -13.53 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 20 N -0.95 -57.00 10.31 21.65 0.22 -56.78 16 21 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 25 C 0.13 5.48 6.93 86.86 0.60 6.09 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.31 6.56 -2.39 -0.02 2.29 16 31 H 0.24 0.39 7.46 -2.91 -0.02 0.37 16 32 H 0.41 6.79 7.49 -92.70 -0.69 6.10 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.52 8.00 -2.39 -0.02 2.51 16 35 H 0.01 0.62 7.40 -2.38 -0.02 0.60 16 36 H 0.02 0.94 7.49 -2.39 -0.02 0.92 16 37 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -79.54 324.21 0.50 -79.03 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -1.53 Total: 6.85 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.46 Total: 13.53 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.40 Total: -125.62 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.06 Total: -22.24 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -79.54 0.50 -79.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015061712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.094 kcal (2) G-P(sol) polarization free energy of solvation -79.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds