Wall clock time and date at job start Mon Mar 30 2020 23:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30859 * 125.42126 * 2 1 4 4 C 1.33321 * 109.68710 * 180.02562 * 3 2 1 5 5 C 1.36662 * 107.78467 * 0.02562 * 4 3 2 6 6 C 1.46763 * 126.84619 * 180.02562 * 5 4 3 7 7 O 1.21674 * 120.00332 * 184.89318 * 6 5 4 8 8 N 1.34780 * 119.99697 * 4.89076 * 6 5 4 9 9 C 1.46500 * 120.00143 * 174.58266 * 8 6 5 10 10 H 1.09004 * 110.77785 * 31.75963 * 9 8 6 11 11 C 1.55159 * 110.72286 * 155.00031 * 9 8 6 12 12 C 1.54907 * 101.58212 * 153.86543 * 11 9 8 13 13 N 1.47425 * 104.82991 * 322.99112 * 12 11 9 14 14 C 1.36938 * 125.64337 * 204.08215 * 13 12 11 15 15 H 1.08000 * 119.99813 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00501 * 0.05164 * 14 13 12 17 17 N 1.31622 * 119.99446 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00226 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47031 * 90.00271 * 18 16 14 20 20 H 1.48504 * 109.47004 * 210.00122 * 18 16 14 21 21 H 1.48501 * 109.47112 * 330.00056 * 18 16 14 22 22 C 1.47018 * 108.70606 * 24.12924 * 13 12 11 23 23 N 1.34495 * 125.41691 * 180.32077 * 2 1 3 24 24 C 1.46505 * 126.47230 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.47269 * 89.97288 * 1 2 3 26 26 H 1.08994 * 109.47233 * 209.98031 * 1 2 3 27 27 H 1.09003 * 109.46670 * 329.97437 * 1 2 3 28 28 H 1.07991 * 126.10673 * 179.97438 * 4 3 2 29 29 H 0.97005 * 120.00230 * 354.58159 * 8 6 5 30 30 H 1.09001 * 110.99887 * 271.94098 * 11 9 8 31 31 H 1.08998 * 110.99965 * 35.78939 * 11 9 8 32 32 H 1.08998 * 110.36830 * 81.82864 * 12 11 9 33 33 H 1.08998 * 110.36846 * 204.14999 * 12 11 9 34 34 H 0.97006 * 119.99498 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.88572 * 239.52134 * 22 13 12 36 36 H 1.09005 * 109.88103 * 118.35582 * 22 13 12 37 37 H 1.09001 * 109.46778 * 272.19846 * 24 23 2 38 38 H 1.08993 * 109.47362 * 32.20272 * 24 23 2 39 39 H 1.09004 * 109.46717 * 152.20139 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 3.5976 -0.6609 -0.0015 6 6 4.8028 -1.4984 -0.0019 7 8 4.7034 -2.7077 -0.0926 8 7 6.0198 -0.9279 0.0983 9 6 7.2146 -1.7672 0.2176 10 1 7.0823 -2.7069 -0.3189 11 6 8.4690 -1.0130 -0.2975 12 6 9.5994 -1.7063 0.5032 13 7 9.0159 -1.9662 1.8319 14 6 9.7201 -2.1248 2.9956 15 1 9.1973 -2.3130 3.9217 16 6 11.1058 -2.0432 2.9850 17 7 11.7427 -1.8129 1.8564 18 14 12.0663 -2.2589 4.5725 19 1 12.4002 -3.6939 4.7579 20 1 13.3188 -1.4639 4.5051 21 1 11.2435 -1.7902 5.7164 22 6 7.5529 -2.0280 1.7005 23 7 2.2864 -1.0961 -0.0061 24 6 1.8310 -2.4885 -0.0145 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3978 1.3721 -0.0011 29 1 6.1046 0.0384 0.0914 30 1 8.6015 -1.1616 -1.3692 31 1 8.4132 0.0484 -0.0558 32 1 9.8841 -2.6430 0.0241 33 1 10.4624 -1.0462 0.5904 34 1 12.7111 -1.7555 1.8491 35 1 7.0918 -1.2635 2.3259 36 1 7.1957 -3.0152 1.9941 37 1 1.6802 -2.8275 1.0105 38 1 0.8918 -2.5604 -0.5628 39 1 2.5823 -3.1136 -0.4972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015615302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:04 Heat of formation + Delta-G solvation = 53.062929 kcal Electronic energy + Delta-G solvation = -21429.446132 eV Core-core repulsion = 18180.995612 eV Total energy + Delta-G solvation = -3248.450520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40134 -39.38830 -37.20017 -34.58028 -33.81813 -32.34429 -31.66870 -29.29518 -28.20347 -27.22049 -26.50633 -24.50694 -22.94265 -20.86686 -20.56063 -19.83578 -19.75515 -17.81529 -16.86881 -16.37229 -16.31092 -15.72683 -14.87886 -14.61681 -14.27353 -14.07158 -13.91915 -13.60243 -13.46600 -13.06329 -12.97500 -12.67101 -12.63878 -12.43650 -11.94000 -11.63951 -11.18552 -10.97387 -10.81486 -10.60961 -10.37431 -10.12772 -9.89460 -9.85273 -9.77486 -9.58811 -8.90623 -8.67315 -8.54087 -6.86086 -5.67415 -3.09144 1.20723 2.32406 2.66243 3.31272 3.39639 3.41307 3.45268 3.47231 4.11982 4.45788 4.50593 4.60843 4.80990 4.96910 5.09867 5.16088 5.25433 5.32131 5.35125 5.42853 5.49664 5.51484 5.75458 5.78734 5.98630 6.16525 6.32704 6.37843 6.46326 6.48956 6.69123 6.85360 6.95867 7.45381 7.56804 7.61828 7.75989 7.81937 8.24934 8.33516 9.19978 9.80412 10.44172 11.36766 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035493 B = 0.003405 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.702121 B = 8220.070304 C = 8300.443854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.221 3.779 3 N -0.494 5.494 4 C 0.038 3.962 5 C -0.082 4.082 6 C 0.593 3.407 7 O -0.549 6.549 8 N -0.701 5.701 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.149 4.149 12 C 0.153 3.847 13 N -0.603 5.603 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.916 3.084 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.128 3.872 23 N -0.424 5.424 24 C 0.064 3.936 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.180 0.820 29 H 0.401 0.599 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.016 0.984 33 H 0.111 0.889 34 H 0.253 0.747 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.990 3.330 -6.443 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 N -0.213 5.213 4 C -0.117 4.117 5 C -0.199 4.199 6 C 0.379 3.621 7 O -0.428 6.428 8 N -0.350 5.350 9 C 0.028 3.972 10 H 0.114 0.886 11 C -0.189 4.189 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.001 3.999 23 N -0.105 5.105 24 C -0.078 4.078 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.197 0.803 29 H 0.236 0.764 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.176 3.055 -6.405 21.388 hybrid contribution 0.853 -0.578 0.848 1.334 sum -19.324 2.478 -5.557 20.259 Atomic orbital electron populations 1.20253 0.84459 1.04359 1.03764 1.23421 0.95893 0.81232 1.03546 1.70091 1.02173 1.28105 1.20970 1.22645 0.95171 0.91306 1.02550 1.20846 0.85386 0.94978 1.18698 1.16779 0.82204 0.86603 0.76503 1.90765 1.86733 1.14183 1.51120 1.45718 1.05367 1.10535 1.73415 1.22177 0.82585 0.94556 0.97905 0.88571 1.23344 0.95843 0.99807 0.99859 1.21952 0.94391 0.97992 0.82874 1.44440 0.99048 1.84386 1.05086 1.19086 0.88806 1.41334 0.85783 0.90470 1.24787 0.96217 1.02241 0.97405 1.69770 1.07323 1.56205 1.23902 0.86048 0.79463 0.77599 0.82247 1.21609 1.21612 1.20688 1.21607 0.87171 0.98273 0.92858 1.45074 1.05189 1.08324 1.51916 1.22314 1.02301 0.78968 1.04232 0.89840 0.90583 0.88775 0.80330 0.76381 0.91595 0.91492 0.96607 0.87098 0.93670 0.95546 0.95605 0.90167 0.89630 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 9.97 36.01 0.36 -0.09 16 2 C 0.22 2.47 7.88 -155.61 -1.23 1.25 16 3 N -0.49 -6.54 11.20 -10.58 -0.12 -6.66 16 4 C 0.04 0.48 11.37 -17.47 -0.20 0.28 16 5 C -0.08 -1.13 6.91 -82.14 -0.57 -1.70 16 6 C 0.59 9.27 7.78 -12.81 -0.10 9.17 16 7 O -0.55 -10.03 14.44 5.21 0.08 -9.95 16 8 N -0.70 -10.39 5.09 -53.31 -0.27 -10.66 16 9 C 0.13 2.37 3.36 -66.10 -0.22 2.15 16 10 H 0.10 1.83 7.48 -51.93 -0.39 1.44 16 11 C -0.15 -2.68 6.71 -24.58 -0.17 -2.85 16 12 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 13 N -0.60 -15.53 3.39 -170.08 -0.58 -16.10 16 14 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 18 Si 0.92 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.13 2.78 6.99 -3.07 -0.02 2.76 16 23 N -0.42 -5.08 3.17 -117.27 -0.37 -5.45 16 24 C 0.06 0.58 10.34 59.85 0.62 1.20 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.34 7.73 -51.93 -0.40 -0.06 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.18 1.77 7.46 -52.49 -0.39 1.38 16 29 H 0.40 4.89 7.51 -40.82 -0.31 4.58 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.49 7.74 -51.93 -0.40 0.09 16 39 H 0.11 1.21 6.30 -51.93 -0.33 0.89 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -33.91 322.35 -8.09 -42.01 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.44 Total: 1.99 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.79 Total: 9.01 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.78 Total: -64.98 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.91 -8.09 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015615302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.072 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds