Wall clock time and date at job start Mon Mar 30 2020 23:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30859 * 125.42126 * 2 1 4 4 C 1.33321 * 109.68710 * 180.02562 * 3 2 1 5 5 C 1.36662 * 107.78467 * 0.02562 * 4 3 2 6 6 C 1.46763 * 126.84619 * 180.02562 * 5 4 3 7 7 O 1.21674 * 120.00332 * 184.89318 * 6 5 4 8 8 N 1.34780 * 119.99697 * 4.89076 * 6 5 4 9 9 C 1.46500 * 120.00143 * 174.58266 * 8 6 5 10 10 H 1.09004 * 110.77785 * 31.75963 * 9 8 6 11 11 C 1.55159 * 110.72286 * 155.00031 * 9 8 6 12 12 C 1.54907 * 101.58212 * 153.86543 * 11 9 8 13 13 N 1.47425 * 104.82991 * 322.99112 * 12 11 9 14 14 C 1.36938 * 125.64337 * 204.08215 * 13 12 11 15 15 H 1.08000 * 119.99813 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00501 * 0.05164 * 14 13 12 17 17 N 1.31622 * 119.99446 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00226 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47031 * 90.00271 * 18 16 14 20 20 H 1.48504 * 109.47004 * 210.00122 * 18 16 14 21 21 H 1.48501 * 109.47112 * 330.00056 * 18 16 14 22 22 C 1.47018 * 108.70606 * 24.12924 * 13 12 11 23 23 N 1.34495 * 125.41691 * 180.32077 * 2 1 3 24 24 C 1.46505 * 126.47230 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.47269 * 89.97288 * 1 2 3 26 26 H 1.08994 * 109.47233 * 209.98031 * 1 2 3 27 27 H 1.09003 * 109.46670 * 329.97437 * 1 2 3 28 28 H 1.07991 * 126.10673 * 179.97438 * 4 3 2 29 29 H 0.97005 * 120.00230 * 354.58159 * 8 6 5 30 30 H 1.09001 * 110.99887 * 271.94098 * 11 9 8 31 31 H 1.08998 * 110.99965 * 35.78939 * 11 9 8 32 32 H 1.08998 * 110.36830 * 81.82864 * 12 11 9 33 33 H 1.08998 * 110.36846 * 204.14999 * 12 11 9 34 34 H 0.97006 * 119.99498 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.88572 * 239.52134 * 22 13 12 36 36 H 1.09005 * 109.88103 * 118.35582 * 22 13 12 37 37 H 1.09001 * 109.46778 * 272.19846 * 24 23 2 38 38 H 1.08993 * 109.47362 * 32.20272 * 24 23 2 39 39 H 1.09004 * 109.46717 * 152.20139 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 3.5976 -0.6609 -0.0015 6 6 4.8028 -1.4984 -0.0019 7 8 4.7034 -2.7077 -0.0926 8 7 6.0198 -0.9279 0.0983 9 6 7.2146 -1.7672 0.2176 10 1 7.0823 -2.7069 -0.3189 11 6 8.4690 -1.0130 -0.2975 12 6 9.5994 -1.7063 0.5032 13 7 9.0159 -1.9662 1.8319 14 6 9.7201 -2.1248 2.9956 15 1 9.1973 -2.3130 3.9217 16 6 11.1058 -2.0432 2.9850 17 7 11.7427 -1.8129 1.8564 18 14 12.0663 -2.2589 4.5725 19 1 12.4002 -3.6939 4.7579 20 1 13.3188 -1.4639 4.5051 21 1 11.2435 -1.7902 5.7164 22 6 7.5529 -2.0280 1.7005 23 7 2.2864 -1.0961 -0.0061 24 6 1.8310 -2.4885 -0.0145 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3978 1.3721 -0.0011 29 1 6.1046 0.0384 0.0914 30 1 8.6015 -1.1616 -1.3692 31 1 8.4132 0.0484 -0.0558 32 1 9.8841 -2.6430 0.0241 33 1 10.4624 -1.0462 0.5904 34 1 12.7111 -1.7555 1.8491 35 1 7.0918 -1.2635 2.3259 36 1 7.1957 -3.0152 1.9941 37 1 1.6802 -2.8275 1.0105 38 1 0.8918 -2.5604 -0.5628 39 1 2.5823 -3.1136 -0.4972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015615302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:03 Heat of formation + Delta-G solvation = 29.875726 kcal Electronic energy + Delta-G solvation = -21430.451604 eV Core-core repulsion = 18180.995612 eV Total energy + Delta-G solvation = -3249.455993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.30543 -40.71879 -38.84335 -35.86682 -34.99604 -33.87251 -32.76699 -31.06358 -29.42387 -28.33058 -27.62576 -26.35219 -24.07840 -22.28824 -22.03825 -21.30449 -20.76679 -19.15870 -18.59041 -17.61564 -17.20643 -16.97109 -16.62281 -16.17669 -15.68044 -15.45418 -14.91647 -14.83574 -14.29891 -14.20755 -14.11001 -13.76884 -13.69013 -13.48880 -13.29639 -13.14955 -13.03053 -12.74074 -12.56484 -12.23567 -12.02226 -11.85462 -11.47787 -11.42888 -10.96696 -10.77190 -10.76518 -10.24333 -9.50451 -8.92926 -7.79689 -5.24921 0.21786 1.40652 1.47108 1.48679 1.57612 1.72958 2.20194 2.27888 2.49847 3.30576 3.37843 3.56300 3.73176 3.79823 3.88879 3.94791 4.01269 4.22374 4.30648 4.37272 4.57014 4.59491 4.69155 4.72310 4.73458 4.87240 4.94591 5.02670 5.05077 5.15153 5.41695 5.43635 5.48938 5.59844 5.77236 6.05786 6.28846 6.41932 6.84924 7.07120 7.09340 7.73993 8.36882 9.21973 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035493 B = 0.003405 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.702121 B = 8220.070304 C = 8300.443854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.230 3.770 3 N -0.525 5.525 4 C 0.045 3.955 5 C -0.113 4.113 6 C 0.595 3.405 7 O -0.581 6.581 8 N -0.690 5.690 9 C 0.152 3.848 10 H 0.086 0.914 11 C -0.127 4.127 12 C 0.152 3.848 13 N -0.623 5.623 14 C -0.244 4.244 15 H 0.076 0.924 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.982 3.018 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.271 1.271 22 C 0.128 3.872 23 N -0.431 5.431 24 C 0.061 3.939 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.200 0.800 29 H 0.416 0.584 30 H 0.094 0.906 31 H 0.085 0.915 32 H -0.010 1.010 33 H 0.083 0.917 34 H 0.250 0.750 35 H 0.030 0.970 36 H 0.009 0.991 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.023 4.311 -6.568 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 N -0.245 5.245 4 C -0.110 4.110 5 C -0.229 4.229 6 C 0.383 3.617 7 O -0.462 6.462 8 N -0.341 5.341 9 C 0.046 3.954 10 H 0.104 0.896 11 C -0.166 4.166 12 C 0.027 3.973 13 N -0.350 5.350 14 C -0.373 4.373 15 H 0.094 0.906 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.810 3.190 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.196 1.196 22 C 0.001 3.999 23 N -0.112 5.112 24 C -0.080 4.080 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.217 0.783 29 H 0.254 0.746 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.008 0.992 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.027 0.973 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.244 4.054 -6.538 23.536 hybrid contribution 1.381 -0.892 0.889 1.869 sum -20.862 3.162 -5.649 21.844 Atomic orbital electron populations 1.20511 0.81107 1.05831 1.05415 1.24341 0.97608 0.80478 1.00743 1.70152 1.02518 1.29206 1.22606 1.23065 0.95921 0.91186 1.00810 1.20617 0.85569 0.95126 1.21619 1.17028 0.82780 0.86356 0.75516 1.90752 1.87202 1.15669 1.52605 1.45448 1.04316 1.10983 1.73321 1.21715 0.83871 0.94822 0.94988 0.89557 1.23147 0.92932 1.00029 1.00518 1.21783 0.95770 0.96720 0.82989 1.44716 1.00734 1.84374 1.05151 1.19415 0.89564 1.41555 0.86795 0.90605 1.25615 0.97050 1.02230 1.00585 1.70006 1.07184 1.56700 1.25601 0.85037 0.77895 0.77261 0.78851 1.21507 1.21490 1.19571 1.21689 0.85180 0.97374 0.95652 1.45314 1.04670 1.09462 1.51712 1.22459 1.03134 0.77372 1.05021 0.87925 0.88272 0.88155 0.78282 0.74576 0.88736 0.89642 0.99166 0.89871 0.94067 0.95198 0.97327 0.89519 0.85850 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 9.97 71.24 0.71 0.05 16 2 C 0.23 4.59 7.88 138.20 1.09 5.68 16 3 N -0.53 -12.85 11.20 -187.40 -2.10 -14.95 16 4 C 0.05 1.07 11.37 84.10 0.96 2.02 16 5 C -0.11 -2.98 6.91 40.01 0.28 -2.70 16 6 C 0.59 18.24 7.78 86.47 0.67 18.92 16 7 O -0.58 -21.34 14.44 -4.27 -0.06 -21.40 16 8 N -0.69 -19.62 5.09 -440.79 -2.24 -21.87 16 9 C 0.15 5.37 3.36 46.18 0.16 5.53 16 10 H 0.09 3.29 7.48 -2.38 -0.02 3.27 16 11 C -0.13 -4.42 6.71 31.99 0.21 -4.21 16 12 C 0.15 7.39 5.89 86.85 0.51 7.90 16 13 N -0.62 -32.72 3.39 -692.00 -2.35 -35.07 16 14 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 17 N -0.95 -55.76 10.09 21.65 0.22 -55.54 16 18 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.13 5.61 6.99 86.73 0.61 6.22 16 23 N -0.43 -9.56 3.17 -524.93 -1.67 -11.23 16 24 C 0.06 1.01 10.34 127.77 1.32 2.33 16 25 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.10 0.49 7.73 -2.39 -0.02 0.47 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.20 3.51 7.46 -2.92 -0.02 3.49 16 29 H 0.42 9.28 7.51 -92.70 -0.70 8.58 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.68 8.01 -2.39 -0.02 2.66 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.08 4.53 5.87 -2.39 -0.01 4.51 16 34 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 35 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 36 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.12 1.02 7.74 -2.39 -0.02 1.01 16 39 H 0.08 1.87 6.30 -2.38 -0.02 1.86 16 Total: -1.00 -75.16 322.35 2.04 -73.12 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.37 Total: 13.55 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 7.84 Total: 25.57 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -8.14 Total: -138.66 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.16 2.04 -73.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015615302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.997 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds